Wall clock time and date at job start Fri Apr 10 2020 18:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.45755 * 117.94420 * 2 1 4 4 C 1.52928 * 110.48722 * 199.07649 * 3 2 1 5 5 H 1.09000 * 109.73854 * 69.08323 * 4 3 2 6 6 C 1.50693 * 109.60353 * 189.49165 * 4 3 2 7 7 O 1.21280 * 120.00290 * 95.42594 * 6 4 3 8 8 N 1.34782 * 119.99850 * 275.42928 * 6 4 3 9 9 C 1.47163 * 120.70672 * 185.02362 * 8 6 4 10 10 C 1.53886 * 108.03126 * 132.74850 * 9 8 6 11 11 H 1.09004 * 112.58057 * 182.21863 * 10 9 8 12 12 C 1.54134 * 107.71195 * 306.32494 * 10 9 8 13 13 C 1.54275 * 104.89001 * 89.40533 * 12 10 9 14 14 C 1.54543 * 104.85225 * 359.81353 * 13 12 10 15 15 H 1.08998 * 112.18765 * 146.40586 * 14 13 12 16 16 C 1.49234 * 120.77138 * 5.10148 * 8 6 4 17 17 N 1.48310 * 107.20875 * 58.36135 * 10 9 8 18 18 C 1.36929 * 128.07875 * 106.70170 * 17 10 9 19 19 H 1.08007 * 119.99997 * 165.00560 * 18 17 10 20 20 C 1.38817 * 120.00056 * 345.00550 * 18 17 10 21 21 N 1.31621 * 119.99654 * 350.70934 * 20 18 17 22 22 Si 1.86802 * 119.99898 * 170.70578 * 20 18 17 23 23 H 1.48498 * 109.46568 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.47305 * 300.00255 * 22 20 18 25 25 H 1.48500 * 109.46787 * 60.00351 * 22 20 18 26 26 C 1.53345 * 108.67100 * 309.24707 * 4 3 2 27 27 C 1.53071 * 108.42353 * 67.53449 * 26 4 3 28 28 C 1.33353 * 117.94956 * 180.02562 * 2 1 3 29 29 O 1.21278 * 118.24308 * 357.79380 * 28 2 1 30 30 H 1.09001 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47197 * 299.99597 * 1 2 3 32 32 H 1.08999 * 109.47387 * 60.00070 * 1 2 3 33 33 H 1.09001 * 109.30203 * 78.76516 * 3 2 1 34 34 H 1.09000 * 109.30206 * 319.38438 * 3 2 1 35 35 H 1.09005 * 109.75490 * 13.11216 * 9 8 6 36 36 H 1.09002 * 109.79478 * 252.40288 * 9 8 6 37 37 H 1.09006 * 110.50145 * 330.46972 * 12 10 9 38 38 H 1.08996 * 110.27544 * 208.23145 * 12 10 9 39 39 H 1.09001 * 110.36594 * 240.96595 * 13 12 10 40 40 H 1.09004 * 110.45234 * 118.70096 * 13 12 10 41 41 H 1.09000 * 110.52056 * 107.82275 * 16 8 6 42 42 H 1.09006 * 109.74814 * 346.60161 * 16 8 6 43 43 H 0.97005 * 119.99708 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.66843 * 187.26048 * 26 4 3 45 45 H 1.08995 * 109.67422 * 307.75992 * 26 4 3 46 46 H 1.09005 * 109.40538 * 71.22499 * 27 26 4 47 47 H 1.09004 * 109.40017 * 191.05596 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5948 1.1260 -0.4682 5 1 3.6127 0.8740 -1.5285 6 6 4.3462 2.4124 -0.2416 7 8 5.0032 2.5614 0.7669 8 7 4.2882 3.3975 -1.1597 9 6 5.1013 4.6147 -1.0084 10 6 5.7868 4.9002 -2.3562 11 1 6.4423 5.7702 -2.3164 12 6 6.5414 3.6241 -2.7781 13 6 5.5164 2.8085 -3.5931 14 6 4.2311 3.6666 -3.5850 15 1 3.6641 3.5674 -4.5106 16 6 3.3971 3.2793 -2.3510 17 7 4.7151 5.0520 -3.3701 18 6 4.2785 6.2020 -3.9717 19 1 3.6653 6.1479 -4.8592 20 6 4.6240 7.4373 -3.4410 21 7 5.2123 7.5072 -2.2657 22 14 4.2541 9.0001 -4.3949 23 1 4.7179 10.1766 -3.6165 24 1 4.9588 8.9612 -5.7014 25 1 2.7907 9.1050 -4.6247 26 6 4.2492 -0.0012 0.3396 27 6 3.5838 -1.3239 -0.0487 28 6 2.0900 -1.1780 -0.0005 29 8 1.4159 -2.1853 0.0402 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.1398 1.6998 1.0090 34 1 1.6270 1.9718 -0.6697 35 1 5.8557 4.4602 -0.2369 36 1 4.4619 5.4542 -0.7353 37 1 6.8617 3.0622 -1.9006 38 1 7.4007 3.8808 -3.3976 39 1 5.3326 1.8456 -3.1164 40 1 5.8697 2.6643 -4.6141 41 1 2.5435 3.9507 -2.2578 42 1 3.0488 2.2511 -2.4498 43 1 5.4541 8.3704 -1.8949 44 1 5.3142 -0.0455 0.1116 45 1 4.1092 0.1818 1.4049 46 1 3.8880 -1.5996 -1.0585 47 1 3.8930 -2.1031 0.6480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029598954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:01 Heat of formation + Delta-G solvation = -45.789530 kcal Electronic energy + Delta-G solvation = -29207.219231 eV Core-core repulsion = 25390.150627 eV Total energy + Delta-G solvation = -3817.068604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02298 -41.09437 -39.47848 -37.32938 -35.34085 -35.02958 -34.11440 -32.40450 -31.16525 -30.79536 -28.22356 -27.75374 -25.86192 -25.43599 -25.24347 -23.61163 -21.33625 -21.18474 -20.25737 -19.59854 -18.76367 -17.91085 -17.59332 -17.45577 -16.86496 -16.77200 -16.56077 -16.06714 -15.60573 -15.37240 -15.18964 -14.71993 -14.64872 -14.40044 -14.29824 -14.26344 -13.64944 -13.52530 -13.27069 -13.22879 -13.12751 -12.93016 -12.83162 -12.73495 -12.66182 -12.56938 -12.21186 -11.99821 -11.87327 -11.78805 -11.45492 -11.40162 -11.09835 -10.83037 -10.76205 -10.56015 -9.82178 -9.69715 -8.67963 -7.82655 -5.17592 1.50617 1.52136 1.54026 1.58013 1.59316 1.95508 2.14986 2.53148 3.32708 3.37747 3.52670 3.57839 3.61105 3.65460 4.06632 4.12514 4.16114 4.21492 4.28148 4.35151 4.36679 4.42343 4.43692 4.52709 4.61942 4.67867 4.69714 4.79732 4.88591 4.90655 4.96092 4.99290 5.03774 5.10197 5.14440 5.18500 5.21189 5.31050 5.33320 5.44866 5.58214 5.61333 5.87108 6.25940 6.34307 6.61360 7.07229 7.08964 7.23869 7.76720 8.54696 9.28501 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021375 B = 0.003630 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.611198 B = 7711.193463 C = 8076.555593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.602 5.602 3 C 0.130 3.870 4 C -0.114 4.114 5 H 0.127 0.873 6 C 0.518 3.482 7 O -0.587 6.587 8 N -0.592 5.592 9 C 0.131 3.869 10 C 0.165 3.835 11 H 0.075 0.925 12 C -0.129 4.129 13 C -0.111 4.111 14 C 0.125 3.875 15 H 0.093 0.907 16 C 0.099 3.901 17 N -0.605 5.605 18 C -0.230 4.230 19 H 0.082 0.918 20 C -0.054 4.054 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.302 1.302 24 H -0.283 1.283 25 H -0.279 1.279 26 C -0.097 4.097 27 C -0.123 4.123 28 C 0.511 3.489 29 O -0.597 6.597 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.114 0.886 43 H 0.245 0.755 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.124 0.876 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 -15.120 0.471 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.333 5.333 3 C 0.007 3.993 4 C -0.135 4.135 5 H 0.145 0.855 6 C 0.307 3.693 7 O -0.468 6.468 8 N -0.323 5.323 9 C 0.006 3.994 10 C 0.057 3.943 11 H 0.093 0.907 12 C -0.168 4.168 13 C -0.150 4.150 14 C 0.018 3.982 15 H 0.111 0.889 16 C -0.024 4.024 17 N -0.326 5.326 18 C -0.359 4.359 19 H 0.099 0.901 20 C -0.249 4.249 21 N -0.585 5.585 22 Si 0.797 3.203 23 H -0.229 1.229 24 H -0.209 1.209 25 H -0.205 1.205 26 C -0.135 4.135 27 C -0.163 4.163 28 C 0.302 3.698 29 O -0.480 6.480 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.132 0.868 43 H 0.055 0.945 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.142 0.858 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.864 -15.243 0.994 16.031 hybrid contribution -0.011 1.774 -0.049 1.775 sum -4.874 -13.469 0.945 14.355 Atomic orbital electron populations 1.21907 0.78500 1.04192 1.03129 1.47218 1.08296 1.05686 1.72148 1.21245 0.90808 0.84607 1.02661 1.21617 0.94751 0.92863 1.04318 0.85546 1.20662 0.81537 0.85030 0.82116 1.90664 1.45304 1.81882 1.28959 1.48753 1.42363 1.17682 1.23537 1.21889 0.93817 0.84877 0.98829 1.21625 0.90022 0.95371 0.87293 0.90679 1.22451 0.98106 0.97031 0.99190 1.22424 0.94907 0.97803 0.99850 1.22258 0.94774 0.84971 0.96204 0.88869 1.23000 0.92215 1.02282 0.84910 1.45325 1.38467 1.01872 1.46983 1.19262 1.27584 0.83507 1.05571 0.90054 1.25478 1.02241 1.00049 0.97091 1.70026 1.47446 1.23564 1.17464 0.85329 0.77797 0.79505 0.77670 1.22854 1.20900 1.20479 1.21441 1.00844 0.91212 1.00038 1.21677 0.88626 0.99289 1.06663 1.20727 0.92116 0.82348 0.74655 1.90680 1.67433 1.36956 1.52904 0.90363 0.91045 0.89995 0.91640 0.88295 0.92607 0.94353 0.92398 0.93126 0.89981 0.91423 0.92268 0.86801 0.94538 0.89344 0.91465 0.85770 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.06 10.47 127.77 1.34 2.40 16 2 N -0.60 -11.50 3.21 -851.62 -2.73 -14.23 16 3 C 0.13 2.38 5.59 86.50 0.48 2.87 16 4 C -0.11 -2.23 1.73 -11.45 -0.02 -2.25 16 5 H 0.13 1.90 6.44 -2.39 -0.02 1.88 16 6 C 0.52 15.29 6.81 87.65 0.60 15.89 16 7 O -0.59 -22.03 15.73 -3.03 -0.05 -22.07 16 8 N -0.59 -19.15 2.28 -809.55 -1.85 -21.00 16 9 C 0.13 5.49 5.78 86.55 0.50 5.99 16 10 C 0.16 7.14 3.11 45.33 0.14 7.28 16 11 H 0.08 3.91 6.36 -2.39 -0.02 3.90 16 12 C -0.13 -4.46 6.16 31.41 0.19 -4.26 16 13 C -0.11 -3.10 6.19 31.55 0.20 -2.90 16 14 C 0.13 3.98 4.27 45.47 0.19 4.17 16 15 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 16 C 0.10 2.71 5.45 86.15 0.47 3.18 16 17 N -0.60 -26.53 2.80 -637.43 -1.79 -28.32 16 18 C -0.23 -11.45 10.37 84.04 0.87 -10.58 16 19 H 0.08 3.86 7.85 -2.91 -0.02 3.83 16 20 C -0.05 -2.83 5.42 84.86 0.46 -2.37 16 21 N -0.94 -51.92 10.42 21.65 0.23 -51.69 16 22 Si 0.97 42.94 29.56 68.60 2.03 44.97 16 23 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 26 C -0.10 -1.78 4.72 30.73 0.15 -1.63 16 27 C -0.12 -1.95 6.03 29.71 0.18 -1.77 16 28 C 0.51 11.20 7.47 87.71 0.66 11.86 16 29 O -0.60 -17.49 15.95 -3.02 -0.05 -17.54 16 30 H 0.08 1.55 6.59 -2.39 -0.02 1.53 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.35 8.11 -2.39 -0.02 1.33 16 34 H 0.10 1.57 7.38 -2.39 -0.02 1.55 16 35 H 0.06 2.43 7.16 -2.38 -0.02 2.42 16 36 H 0.04 1.91 7.83 -2.39 -0.02 1.89 16 37 H 0.06 1.94 7.83 -2.38 -0.02 1.92 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 1.81 7.86 -2.39 -0.02 1.80 16 40 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.11 2.05 5.36 -2.38 -0.01 2.04 16 43 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 44 H 0.09 1.58 8.14 -2.38 -0.02 1.57 16 45 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 46 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 47 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -68.24 359.30 3.16 -65.08 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.96 Total: 16.93 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 6.40 Total: 27.88 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -6.14 Total: -115.24 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.10 Total: -39.61 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -68.24 3.16 -65.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029598954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.291 kcal (2) G-P(sol) polarization free energy of solvation -68.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds