Wall clock time and date at job start Fri Apr 10 2020 18:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99901 * 2 1 4 4 N 1.34774 * 120.00059 * 180.02562 * 2 1 3 5 5 C 1.46923 * 120.63204 * 179.97438 * 4 2 1 6 6 C 1.53190 * 108.77488 * 126.41228 * 5 4 2 7 7 C 1.53042 * 109.31229 * 54.63972 * 6 5 4 8 8 C 1.50694 * 109.46248 * 178.61288 * 7 6 5 9 9 O 1.21291 * 120.00000 * 25.88199 * 8 7 6 10 10 N 1.34780 * 120.00435 * 205.88041 * 8 7 6 11 11 C 1.47868 * 126.93734 * 4.96396 * 10 8 7 12 12 C 1.55970 * 105.12699 * 180.60109 * 11 10 8 13 13 H 1.09001 * 115.90394 * 160.60419 * 12 11 10 14 14 C 1.58975 * 98.67817 * 34.66615 * 12 11 10 15 15 C 1.49288 * 126.94620 * 185.27649 * 10 8 7 16 16 H 1.09000 * 116.15529 * 16.70344 * 15 10 8 17 17 C 1.56018 * 104.09224 * 247.56027 * 15 10 8 18 18 N 1.47875 * 105.10536 * 288.76909 * 17 15 10 19 19 C 1.36931 * 126.94776 * 181.98182 * 18 17 15 20 20 H 1.07993 * 120.00247 * 180.02562 * 19 18 17 21 21 C 1.38812 * 119.99793 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00145 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00048 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46968 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47179 * 119.99795 * 23 21 19 26 26 H 1.48500 * 109.47201 * 239.99948 * 23 21 19 27 27 C 1.53038 * 109.53698 * 298.63416 * 7 6 5 28 28 C 1.46925 * 120.63191 * 0.02562 * 4 2 1 29 29 H 1.08996 * 109.46901 * 269.99651 * 1 2 3 30 30 H 1.08997 * 109.47379 * 29.99649 * 1 2 3 31 31 H 1.09005 * 109.47105 * 150.00134 * 1 2 3 32 32 H 1.09007 * 109.58731 * 6.62977 * 5 4 2 33 33 H 1.09002 * 109.59341 * 246.20240 * 5 4 2 34 34 H 1.08998 * 109.50205 * 294.68852 * 6 5 4 35 35 H 1.09004 * 109.49917 * 174.58506 * 6 5 4 36 36 H 1.09001 * 109.45931 * 58.65249 * 7 6 5 37 37 H 1.08991 * 110.31908 * 300.90118 * 11 10 8 38 38 H 1.08997 * 110.31507 * 63.09977 * 11 10 8 39 39 H 1.09004 * 112.07705 * 190.72034 * 14 12 11 40 40 H 1.09004 * 113.30043 * 62.73915 * 14 12 11 41 41 H 1.09003 * 110.31548 * 47.67460 * 17 15 10 42 42 H 1.09001 * 110.31764 * 169.76360 * 17 15 10 43 43 H 0.97007 * 119.99957 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.49660 * 181.31656 * 27 7 6 45 45 H 1.09000 * 109.49692 * 301.41490 * 27 7 6 46 46 H 1.09003 * 109.58806 * 353.37068 * 28 4 2 47 47 H 1.08993 * 109.59055 * 113.79879 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6501 -1.1834 -0.0011 6 6 4.1340 -2.0499 1.1657 7 6 3.4902 -3.4350 1.0687 8 6 3.9903 -4.3013 2.1957 9 8 4.3772 -3.7920 3.2263 10 7 4.0078 -5.6420 2.0586 11 6 3.6716 -6.4155 0.8441 12 6 3.8457 -7.9106 1.2526 13 1 3.3413 -8.6394 0.6181 14 6 3.3599 -7.8049 2.7626 15 6 4.3642 -6.6463 3.1041 16 1 4.3627 -6.2890 4.1339 17 6 5.6994 -7.2702 2.5921 18 7 5.3168 -8.0962 1.4268 19 6 6.1445 -8.8739 0.6618 20 1 5.7430 -9.4344 -0.1694 21 6 7.4997 -8.9416 0.9547 22 7 7.9891 -8.2580 1.9674 23 14 8.6288 -10.0030 -0.0884 24 1 7.8384 -10.6642 -1.1577 25 1 9.6788 -9.1523 -0.7039 26 1 9.2668 -11.0359 0.7668 27 6 1.9689 -3.3001 1.1657 28 6 1.4604 -2.4476 -0.0017 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.0268 -0.1674 0.1176 33 1 4.0106 -1.6015 -0.9409 34 1 3.8503 -1.5822 2.1085 35 1 5.2186 -2.1490 1.1200 36 1 3.7542 -3.8920 0.1149 37 1 2.6492 -6.2037 0.5314 38 1 4.3702 -6.1812 0.0408 39 1 3.5695 -8.7148 3.3250 40 1 2.3196 -7.4943 2.8601 41 1 6.3919 -6.4852 2.2884 42 1 6.1485 -7.8914 3.3670 43 1 8.9362 -8.3051 2.1718 44 1 1.5124 -4.2889 1.1200 45 1 1.7056 -2.8205 2.1084 46 1 0.3921 -2.2659 0.1166 47 1 1.6426 -2.9687 -0.9415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032773574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:35 Heat of formation + Delta-G solvation = -36.990633 kcal Electronic energy + Delta-G solvation = -28338.440596 eV Core-core repulsion = 24521.753542 eV Total energy + Delta-G solvation = -3816.687055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.79302 -41.00497 -39.61315 -37.93375 -35.47455 -34.27609 -33.22035 -32.40894 -30.74429 -30.26619 -30.16640 -26.98635 -26.93839 -25.06964 -24.27100 -23.00330 -21.60831 -21.41477 -20.16852 -19.76513 -18.90187 -18.12619 -17.88865 -17.27552 -16.89054 -16.57973 -16.42948 -16.14572 -15.66554 -15.30062 -15.11220 -14.91613 -14.64503 -14.28010 -14.07237 -13.80743 -13.67609 -13.52328 -13.33882 -13.19166 -13.00320 -12.90183 -12.85532 -12.81002 -12.73446 -12.27773 -12.24596 -12.10324 -12.00160 -11.89071 -11.75635 -11.66390 -11.52708 -10.95110 -10.81695 -10.62949 -9.71047 -9.50365 -8.91014 -7.85133 -5.21072 1.46654 1.46870 1.57234 1.60669 1.64177 1.97857 2.08362 2.48099 3.31926 3.36445 3.49702 3.60534 3.70930 3.78829 3.82437 3.94156 4.02484 4.06021 4.21088 4.21421 4.25967 4.40648 4.48080 4.57966 4.60368 4.63453 4.71741 4.72862 4.77827 4.80969 4.86180 4.93363 4.96078 5.05111 5.08739 5.15558 5.18348 5.26201 5.29250 5.46572 5.49695 5.55150 5.65602 6.09723 6.43080 6.71793 7.02283 7.15773 7.20171 7.71239 8.41561 9.26049 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.003054 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.658514 B = 9167.092074 C = 9493.151844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.502 3.498 3 O -0.607 6.607 4 N -0.613 5.613 5 C 0.117 3.883 6 C -0.110 4.110 7 C -0.092 4.092 8 C 0.524 3.476 9 O -0.601 6.601 10 N -0.607 5.607 11 C 0.090 3.910 12 C 0.135 3.865 13 H 0.138 0.862 14 C -0.128 4.128 15 C 0.097 3.903 16 H 0.105 0.895 17 C 0.188 3.812 18 N -0.616 5.616 19 C -0.226 4.226 20 H 0.099 0.901 21 C -0.075 4.075 22 N -0.959 5.959 23 Si 0.976 3.024 24 H -0.255 1.255 25 H -0.302 1.302 26 H -0.299 1.299 27 C -0.115 4.115 28 C 0.107 3.893 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.111 0.889 41 H -0.008 1.008 42 H 0.012 0.988 43 H 0.242 0.758 44 H 0.108 0.892 45 H 0.060 0.940 46 H 0.128 0.872 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.799 7.402 -6.774 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.293 3.707 3 O -0.489 6.489 4 N -0.346 5.346 5 C -0.006 4.006 6 C -0.149 4.149 7 C -0.113 4.113 8 C 0.314 3.686 9 O -0.483 6.483 10 N -0.339 5.339 11 C -0.034 4.034 12 C 0.029 3.971 13 H 0.156 0.844 14 C -0.167 4.167 15 C -0.006 4.006 16 H 0.123 0.877 17 C 0.061 3.939 18 N -0.340 5.340 19 C -0.354 4.354 20 H 0.117 0.883 21 C -0.267 4.267 22 N -0.608 5.608 23 Si 0.805 3.195 24 H -0.179 1.179 25 H -0.230 1.230 26 H -0.226 1.226 27 C -0.153 4.153 28 C -0.014 4.014 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.010 0.990 42 H 0.031 0.969 43 H 0.051 0.949 44 H 0.126 0.874 45 H 0.079 0.921 46 H 0.146 0.854 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.059 8.199 -6.305 23.462 hybrid contribution 2.259 -0.340 0.283 2.302 sum -18.800 7.859 -6.022 21.248 Atomic orbital electron populations 1.22009 0.87895 1.06551 1.06205 1.21736 0.92558 0.82318 0.74071 1.90687 1.72190 1.33116 1.52871 1.48371 1.06596 1.07258 1.72364 1.21473 0.80503 1.00477 0.98122 1.21647 1.00015 0.94230 0.98959 1.21265 0.98760 0.94284 0.97004 1.20952 0.77286 0.81204 0.89136 1.90649 1.50879 1.73621 1.33110 1.49340 1.65682 1.04402 1.14505 1.23278 1.01116 0.93082 0.85885 1.23890 0.83697 0.93989 0.95556 0.84433 1.24379 0.98398 0.96476 0.97430 1.24112 0.96142 0.87949 0.92438 0.87723 1.21486 0.91679 0.91585 0.89106 1.45457 1.03834 1.52196 1.32499 1.19591 0.88949 1.18847 1.08056 0.88312 1.25686 0.98889 1.02145 0.99978 1.70187 1.12139 1.46669 1.31847 0.85032 0.78752 0.77602 0.78098 1.17857 1.22957 1.22611 1.21866 0.90921 1.02644 0.99882 1.22153 0.98404 0.81939 0.98906 0.87420 0.88847 0.86520 0.90738 0.89506 0.92758 0.92102 0.87456 0.86624 0.93203 0.90651 0.87096 0.99008 0.96948 0.94879 0.87359 0.92112 0.85396 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.46 71.24 0.67 -0.85 16 2 C 0.50 10.13 7.81 87.66 0.68 10.81 16 3 O -0.61 -18.78 16.51 -3.02 -0.05 -18.83 16 4 N -0.61 -10.70 2.97 -818.84 -2.43 -13.13 16 5 C 0.12 2.53 6.43 86.36 0.56 3.08 16 6 C -0.11 -2.83 4.88 30.67 0.15 -2.69 16 7 C -0.09 -2.11 2.09 -11.51 -0.02 -2.14 16 8 C 0.52 17.62 6.99 87.65 0.61 18.23 16 9 O -0.60 -25.87 16.51 -3.06 -0.05 -25.92 16 10 N -0.61 -19.97 2.94 -768.44 -2.26 -22.22 16 11 C 0.09 2.41 5.61 87.15 0.49 2.90 16 12 C 0.14 4.20 5.55 47.63 0.26 4.47 16 13 H 0.14 3.45 8.14 -2.39 -0.02 3.44 16 14 C -0.13 -3.63 6.93 34.18 0.24 -3.39 16 15 C 0.10 3.62 5.17 46.93 0.24 3.87 16 16 H 0.10 3.99 8.09 -2.39 -0.02 3.97 16 17 C 0.19 9.28 4.79 87.16 0.42 9.70 16 18 N -0.62 -28.50 3.06 -644.82 -1.98 -30.47 16 19 C -0.23 -11.62 10.37 84.03 0.87 -10.75 16 20 H 0.10 4.64 7.83 -2.91 -0.02 4.62 16 21 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 22 N -0.96 -58.55 10.56 21.65 0.23 -58.32 16 23 Si 0.98 44.74 29.55 68.60 2.03 46.77 16 24 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 27 C -0.11 -1.65 5.34 30.68 0.16 -1.49 16 28 C 0.11 0.98 6.22 86.38 0.54 1.52 16 29 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.12 0.26 6.19 -2.38 -0.01 0.24 16 32 H 0.07 1.93 7.01 -2.38 -0.02 1.91 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.65 7.92 -2.39 -0.02 1.63 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.11 2.17 7.45 -2.39 -0.02 2.15 16 37 H 0.12 1.84 7.78 -2.39 -0.02 1.82 16 38 H 0.05 1.56 8.12 -2.39 -0.02 1.54 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 40 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 41 H -0.01 -0.49 7.68 -2.39 -0.02 -0.51 16 42 H 0.01 0.70 7.46 -2.39 -0.02 0.68 16 43 H 0.24 14.62 8.31 -92.70 -0.77 13.84 16 44 H 0.11 1.07 7.78 -2.39 -0.02 1.05 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.13 0.33 5.52 -2.39 -0.01 0.32 16 47 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -84.15 366.97 2.79 -81.36 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.96 Total: 11.17 kcal Atomic # 6 Polarization: 23.26 SS G_CDS: 6.34 Total: 29.60 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -6.44 Total: -124.15 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -0.10 Total: -44.75 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -84.15 2.79 -81.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032773574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.370 kcal (2) G-P(sol) polarization free energy of solvation -84.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds