Wall clock time and date at job start Fri Apr 10 2020 18:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46758 * 124.35013 * 2 1 4 4 C 1.54479 * 105.47230 * 197.03817 * 3 2 1 5 5 H 1.09002 * 111.00164 * 92.71833 * 4 3 2 6 6 C 1.50706 * 110.96723 * 216.46159 * 4 3 2 7 7 O 1.21275 * 120.00321 * 15.94945 * 6 4 3 8 8 N 1.34781 * 119.99686 * 195.94500 * 6 4 3 9 9 C 1.46897 * 120.45694 * 185.02732 * 8 6 4 10 10 C 1.53360 * 108.73462 * 124.34875 * 9 8 6 11 11 C 1.52546 * 109.13010 * 52.25848 * 10 9 8 12 12 C 1.52964 * 114.06332 * 75.53980 * 11 10 9 13 13 N 1.47163 * 87.85586 * 139.44351 * 12 11 10 14 14 C 1.36930 * 136.00015 * 153.31771 * 13 12 11 15 15 H 1.08000 * 120.00572 * 352.12576 * 14 13 12 16 16 C 1.38818 * 119.99710 * 172.12149 * 14 13 12 17 17 N 1.31622 * 119.99830 * 185.50065 * 16 14 13 18 18 Si 1.86796 * 120.00094 * 5.50883 * 16 14 13 19 19 H 1.48494 * 109.47393 * 64.29735 * 18 16 14 20 20 H 1.48509 * 109.46873 * 304.29968 * 18 16 14 21 21 H 1.48498 * 109.46978 * 184.30553 * 18 16 14 22 22 C 1.47168 * 87.99405 * 333.56995 * 13 12 11 23 23 C 1.52558 * 113.43484 * 302.66671 * 11 10 9 24 24 C 1.46884 * 120.46504 * 5.00972 * 8 6 4 25 25 C 1.54623 * 101.76617 * 334.57886 * 4 3 2 26 26 C 1.34427 * 124.34679 * 180.02562 * 2 1 3 27 27 O 1.21277 * 124.94498 * 359.53737 * 26 2 1 28 28 H 1.09003 * 109.47325 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47378 * 300.00299 * 1 2 3 30 30 H 1.08992 * 109.47619 * 60.00365 * 1 2 3 31 31 H 1.09004 * 110.25106 * 78.03588 * 3 2 1 32 32 H 1.09005 * 110.24623 * 316.03328 * 3 2 1 33 33 H 1.08993 * 109.59679 * 4.57238 * 9 8 6 34 34 H 1.08998 * 109.58945 * 244.12199 * 9 8 6 35 35 H 1.09002 * 109.52965 * 292.36021 * 10 9 8 36 36 H 1.09003 * 109.58432 * 172.18900 * 10 9 8 37 37 H 1.08998 * 113.49102 * 24.68825 * 12 11 10 38 38 H 1.09002 * 113.54271 * 254.19566 * 12 11 10 39 39 H 0.96999 * 120.00257 * 5.09369 * 17 16 14 40 40 H 1.09000 * 113.48361 * 141.18120 * 22 13 12 41 41 H 1.08995 * 113.49162 * 271.68121 * 22 13 12 42 42 H 1.08998 * 109.52676 * 177.21782 * 23 11 10 43 43 H 1.08999 * 109.52190 * 297.42504 * 23 11 10 44 44 H 1.09006 * 109.58760 * 355.42578 * 24 8 6 45 45 H 1.08993 * 109.59176 * 115.71706 * 24 8 6 46 46 H 1.09002 * 110.48763 * 143.47336 * 25 4 3 47 47 H 1.08996 * 110.49151 * 266.12109 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2116 0.0000 4 6 3.7008 0.7487 -0.4362 5 1 3.8270 0.8450 -1.5146 6 6 4.7717 1.5123 0.2996 7 8 4.4911 2.1401 1.2985 8 7 6.0413 1.4973 -0.1525 9 6 7.1128 2.1455 0.6152 10 6 8.2140 1.1145 0.8915 11 6 8.6268 0.4596 -0.4229 12 6 9.5033 1.3435 -1.3118 13 7 10.2997 0.1457 -1.6228 14 6 11.0829 -0.2731 -2.6650 15 1 11.1165 0.3001 -3.5797 16 6 11.8339 -1.4346 -2.5458 17 7 12.6686 -1.7797 -3.5032 18 14 11.6597 -2.5076 -1.0268 19 1 10.2824 -3.0593 -0.9657 20 1 11.9209 -1.6932 0.1873 21 1 12.6374 -3.6233 -1.0941 22 6 9.8798 -0.4072 -0.3252 23 6 7.4688 -0.2082 -1.1580 24 6 6.3729 0.8321 -1.4195 25 6 3.6898 -0.7378 -0.0109 26 6 2.2234 -1.1099 -0.0005 27 8 1.7946 -2.2443 0.0070 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 2.3309 1.6428 1.0004 32 1 1.8982 1.9384 -0.7100 33 1 6.7135 2.5157 1.5594 34 1 7.5245 2.9747 0.0398 35 1 7.8374 0.3536 1.5753 36 1 9.0757 1.6109 1.3377 37 1 10.0572 2.1021 -0.7589 38 1 8.9768 1.7512 -2.1748 39 1 12.8142 -1.1867 -4.2568 40 1 9.6701 -1.4763 -0.3559 41 1 10.5372 -0.1293 0.4986 42 1 7.8233 -0.6105 -2.1070 43 1 7.0663 -1.0157 -0.5464 44 1 5.4860 0.3372 -1.8154 45 1 6.7305 1.5704 -2.1372 46 1 4.2323 -1.3459 -0.7348 47 1 4.1197 -0.8532 0.9841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035717738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:53 Heat of formation + Delta-G solvation = 3.284878 kcal Electronic energy + Delta-G solvation = -28260.912630 eV Core-core repulsion = 24445.972052 eV Total energy + Delta-G solvation = -3814.940578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30732 -40.23416 -39.06580 -36.61945 -36.06972 -33.50852 -32.66736 -31.29565 -30.78593 -28.15312 -27.49561 -26.82015 -25.64025 -24.22563 -23.52929 -22.51885 -20.92403 -20.00755 -19.52411 -18.25577 -17.66275 -17.41232 -17.00416 -16.35734 -15.95572 -15.41874 -15.40189 -15.19473 -14.85357 -14.34755 -14.11886 -14.09913 -13.83298 -13.64773 -13.31014 -13.22693 -13.13514 -12.82708 -12.63477 -12.59267 -12.36027 -11.97428 -11.83629 -11.77469 -11.65174 -11.14813 -10.92652 -10.81191 -10.55272 -10.37047 -10.24915 -9.96691 -9.86668 -9.27257 -9.14645 -9.07779 -8.92911 -8.66614 -7.18148 -6.31531 -3.25919 2.21015 2.32519 2.55686 2.83888 3.38288 3.41831 3.62490 3.82924 3.98723 4.22650 4.46829 4.57147 4.57461 4.67807 4.70300 4.79216 4.91573 4.96950 5.06203 5.09882 5.11514 5.22795 5.25824 5.33299 5.36360 5.40861 5.46395 5.50933 5.57044 5.60832 5.74834 5.86683 5.98960 6.08558 6.09297 6.20214 6.23497 6.29004 6.36190 6.44386 6.51271 6.70025 6.87847 7.10137 7.20235 7.81902 7.89968 8.20923 8.94928 9.47812 10.35150 11.18102 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.003233 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.318188 B = 8657.941337 C = 9390.010409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.624 5.624 3 C 0.116 3.884 4 C -0.127 4.127 5 H 0.116 0.884 6 C 0.528 3.472 7 O -0.542 6.542 8 N -0.600 5.600 9 C 0.116 3.884 10 C -0.117 4.117 11 C -0.102 4.102 12 C 0.132 3.868 13 N -0.626 5.626 14 C -0.303 4.303 15 H 0.081 0.919 16 C -0.025 4.025 17 N -0.935 5.935 18 Si 1.070 2.930 19 H -0.292 1.292 20 H -0.288 1.288 21 H -0.296 1.296 22 C 0.104 3.896 23 C -0.102 4.102 24 C 0.105 3.895 25 C -0.140 4.140 26 C 0.521 3.479 27 O -0.529 6.529 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.042 0.958 39 H 0.260 0.740 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.114 0.886 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.544 8.583 7.418 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.359 5.359 3 C -0.007 4.007 4 C -0.149 4.149 5 H 0.134 0.866 6 C 0.315 3.685 7 O -0.420 6.420 8 N -0.332 5.332 9 C -0.006 4.006 10 C -0.155 4.155 11 C -0.104 4.104 12 C 0.005 3.995 13 N -0.354 5.354 14 C -0.429 4.429 15 H 0.099 0.901 16 C -0.224 4.224 17 N -0.577 5.577 18 Si 0.902 3.098 19 H -0.220 1.220 20 H -0.215 1.215 21 H -0.223 1.223 22 C -0.021 4.021 23 C -0.140 4.140 24 C -0.017 4.017 25 C -0.181 4.181 26 C 0.309 3.691 27 O -0.406 6.406 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.132 0.868 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.327 6.818 8.395 23.912 hybrid contribution -0.212 1.601 -0.821 1.811 sum -21.539 8.419 7.574 24.335 Atomic orbital electron populations 1.21575 0.77737 1.03847 1.01673 1.48165 1.06712 1.07289 1.73756 1.22020 0.87779 0.86964 1.03938 1.22265 0.94469 0.95710 1.02443 0.86600 1.19969 0.83056 0.80815 0.84669 1.90688 1.81232 1.43642 1.26399 1.48089 1.07034 1.54827 1.23288 1.21645 0.87026 0.95062 0.96909 1.21767 0.98114 0.98357 0.97308 1.21893 0.94651 0.98754 0.95076 1.22339 0.90934 0.90937 0.95242 1.45957 1.58664 1.15159 1.15641 1.20128 1.20822 1.10070 0.91884 0.90082 1.25703 0.94742 0.97813 1.04100 1.70918 1.35489 1.39636 1.11646 0.83717 0.74959 0.76053 0.75034 1.22034 1.21502 1.22310 1.22677 0.91861 0.97667 0.89934 1.21516 0.93603 0.96740 1.02176 1.21928 0.99063 0.95993 0.84727 1.22305 0.95437 0.94542 1.05778 1.20772 0.88947 0.84380 0.75032 1.90744 1.78434 1.21010 1.50379 0.89816 0.91900 0.91908 0.88734 0.89798 0.89127 0.91117 0.91558 0.90359 0.94670 0.94005 0.92956 0.92910 0.93831 0.88988 0.91624 0.89824 0.90565 0.86811 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.14 59.85 0.67 1.30 16 2 N -0.62 -5.56 3.33 -180.29 -0.60 -6.17 16 3 C 0.12 0.88 6.82 -3.13 -0.02 0.86 16 4 C -0.13 -1.00 2.50 -90.14 -0.23 -1.23 16 5 H 0.12 0.69 6.60 -51.93 -0.34 0.35 16 6 C 0.53 5.51 6.86 -10.98 -0.08 5.44 16 7 O -0.54 -7.23 14.95 5.56 0.08 -7.15 16 8 N -0.60 -6.23 2.94 -172.63 -0.51 -6.74 16 9 C 0.12 1.25 6.34 -3.64 -0.02 1.23 16 10 C -0.12 -1.41 5.31 -26.78 -0.14 -1.55 16 11 C -0.10 -1.54 0.83 -155.16 -0.13 -1.67 16 12 C 0.13 2.34 7.63 -8.22 -0.06 2.28 16 13 N -0.63 -14.46 3.46 -184.85 -0.64 -15.10 16 14 C -0.30 -8.42 11.08 -15.06 -0.17 -8.58 16 15 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 16 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 17 N -0.93 -29.13 13.70 55.49 0.76 -28.37 16 18 Si 1.07 26.36 25.19 -169.99 -4.28 22.08 16 19 H -0.29 -6.74 6.42 56.52 0.36 -6.38 16 20 H -0.29 -6.66 6.26 56.52 0.35 -6.30 16 21 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 22 C 0.10 2.05 4.82 -8.37 -0.04 2.01 16 23 C -0.10 -1.35 5.26 -26.78 -0.14 -1.49 16 24 C 0.11 1.04 6.20 -3.65 -0.02 1.02 16 25 C -0.14 -1.25 6.29 -26.74 -0.17 -1.42 16 26 C 0.52 5.88 8.03 -10.86 -0.09 5.79 16 27 O -0.53 -8.01 17.35 5.56 0.10 -7.92 16 28 H 0.08 0.65 7.53 -51.93 -0.39 0.26 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.84 6.85 -51.93 -0.36 0.48 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.02 7.00 -51.93 -0.36 0.65 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.04 0.61 8.06 -51.93 -0.42 0.20 16 38 H 0.04 0.71 7.54 -51.93 -0.39 0.32 16 39 H 0.26 8.01 8.73 -40.82 -0.36 7.66 16 40 H 0.05 1.10 4.77 -51.93 -0.25 0.85 16 41 H 0.04 0.86 7.56 -51.93 -0.39 0.47 16 42 H 0.09 1.45 7.95 -51.93 -0.41 1.04 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.63 5.34 -51.93 -0.28 0.35 16 45 H 0.08 0.76 7.61 -51.93 -0.40 0.37 16 46 H 0.11 0.91 8.03 -51.93 -0.42 0.50 16 47 H 0.11 1.03 7.89 -51.93 -0.41 0.62 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -35.22 361.76 -7.81 -43.03 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -7.43 Total: -2.29 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.73 Total: 3.17 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.99 Total: -56.37 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.18 Total: -15.07 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -4.28 Total: 22.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.22 -7.81 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035717738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.311 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds