Wall clock time and date at job start Fri Apr 10 2020 18:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46818 * 124.33785 * 2 1 4 4 C 1.54471 * 105.44782 * 197.00408 * 3 2 1 5 5 H 1.09002 * 110.97382 * 92.76342 * 4 3 2 6 6 C 1.50698 * 110.97014 * 216.49657 * 4 3 2 7 7 O 1.21284 * 119.99979 * 356.90351 * 6 4 3 8 8 N 1.34776 * 120.00011 * 176.91089 * 6 4 3 9 9 C 1.46952 * 120.44490 * 179.97438 * 8 6 4 10 10 C 1.53597 * 108.52935 * 125.72317 * 9 8 6 11 11 H 1.08999 * 110.59941 * 172.16645 * 10 9 8 12 12 C 1.53363 * 108.68738 * 293.75974 * 10 9 8 13 13 C 1.54286 * 108.60814 * 60.88482 * 12 10 9 14 14 C 1.53014 * 110.12129 * 60.17632 * 13 12 10 15 15 C 1.53375 * 109.25142 * 299.41800 * 14 13 12 16 16 H 1.08991 * 110.59515 * 178.14686 * 15 14 13 17 17 C 1.46945 * 120.44292 * 359.97438 * 8 6 4 18 18 N 1.47565 * 107.98524 * 56.37877 * 15 14 13 19 19 C 1.36935 * 121.61027 * 122.27684 * 18 15 14 20 20 H 1.07997 * 120.00124 * 332.35946 * 19 18 15 21 21 C 1.38819 * 119.99996 * 152.35358 * 19 18 15 22 22 N 1.31619 * 119.99683 * 144.66937 * 21 19 18 23 23 Si 1.86792 * 120.00041 * 324.66860 * 21 19 18 24 24 H 1.48501 * 109.47250 * 84.61029 * 23 21 19 25 25 H 1.48504 * 109.47080 * 204.61164 * 23 21 19 26 26 H 1.48498 * 109.47333 * 324.60805 * 23 21 19 27 27 C 1.54634 * 101.79916 * 334.62817 * 4 3 2 28 28 C 1.34421 * 124.34655 * 180.02562 * 2 1 3 29 29 O 1.21281 * 124.94126 * 359.62143 * 28 2 1 30 30 H 1.08996 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46496 * 299.98323 * 1 2 3 32 32 H 1.08997 * 109.46909 * 59.97658 * 1 2 3 33 33 H 1.09004 * 110.23692 * 78.02176 * 3 2 1 34 34 H 1.09003 * 110.28012 * 316.00707 * 3 2 1 35 35 H 1.09007 * 109.62424 * 6.01415 * 9 8 6 36 36 H 1.08993 * 109.79013 * 245.53268 * 9 8 6 37 37 H 1.08997 * 109.50516 * 180.83989 * 12 10 9 38 38 H 1.08998 * 109.50965 * 300.96886 * 12 10 9 39 39 H 1.08995 * 109.25927 * 299.97335 * 13 12 10 40 40 H 1.08999 * 109.25200 * 180.36906 * 13 12 10 41 41 H 1.08994 * 109.50635 * 179.48654 * 14 13 12 42 42 H 1.09000 * 109.54508 * 59.36521 * 14 13 12 43 43 H 1.08994 * 109.62375 * 353.97631 * 17 8 6 44 44 H 1.08999 * 109.62924 * 114.54671 * 17 8 6 45 45 H 0.96995 * 119.99884 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.48776 * 143.45362 * 27 4 3 47 47 H 1.08994 * 110.48730 * 266.10259 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2123 0.0000 4 6 3.7010 0.7489 -0.4354 5 1 3.8274 0.8457 -1.5137 6 6 4.7717 1.5119 0.3010 7 8 4.4648 2.3987 1.0695 8 7 6.0704 1.2090 0.1057 9 6 7.1225 1.9471 0.8183 10 6 8.0149 0.9365 1.5540 11 1 8.8862 1.4336 1.9805 12 6 7.1876 0.2599 2.6539 13 6 6.0045 -0.4797 1.9955 14 6 6.5229 -1.5409 1.0226 15 6 7.3515 -0.8600 -0.0739 16 1 7.7593 -1.6005 -0.7618 17 6 6.4532 0.1363 -0.8227 18 7 8.4285 -0.0918 0.5797 19 6 9.7482 -0.3217 0.2957 20 1 10.0671 -1.2992 -0.0350 21 6 10.6762 0.7016 0.4326 22 7 11.8958 0.4326 0.8480 23 14 10.1940 2.4601 0.0274 24 1 9.5383 3.0781 1.2077 25 1 11.4088 3.2372 -0.3274 26 1 9.2518 2.4631 -1.1204 27 6 3.6898 -0.7379 -0.0108 28 6 2.2234 -1.1098 -0.0005 29 8 1.7945 -2.2442 0.0056 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5136 0.8902 32 1 -0.3633 0.5142 -0.8898 33 1 2.3306 1.6434 1.0005 34 1 1.8989 1.9392 -0.7102 35 1 6.6685 2.6274 1.5389 36 1 7.7219 2.5146 0.1065 37 1 7.8130 -0.4502 3.1950 38 1 6.8128 1.0155 3.3444 39 1 5.3882 0.2381 1.4541 40 1 5.4051 -0.9595 2.7692 41 1 5.6797 -2.0629 0.5703 42 1 7.1471 -2.2546 1.5602 43 1 5.5593 -0.3742 -1.1809 44 1 6.9992 0.5593 -1.6660 45 1 12.5442 1.1476 0.9441 46 1 4.2325 -1.3456 -0.7350 47 1 4.1196 -0.8538 0.9841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039615066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:16 Heat of formation + Delta-G solvation = -12.210564 kcal Electronic energy + Delta-G solvation = -30225.322864 eV Core-core repulsion = 26409.710354 eV Total energy + Delta-G solvation = -3815.612510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.80567 -41.08221 -39.41514 -37.34830 -35.83081 -34.62688 -34.42739 -33.33250 -32.66923 -29.13870 -28.69950 -27.75144 -27.18633 -25.59197 -24.16241 -23.16876 -22.86409 -21.22040 -20.54675 -19.87905 -18.61271 -18.50956 -17.73218 -17.46046 -16.98494 -16.69824 -16.33165 -16.13698 -15.56838 -15.52471 -15.26184 -14.96222 -14.77021 -14.66178 -14.59429 -14.33507 -14.25335 -13.96283 -13.66239 -13.33312 -13.20551 -13.13671 -12.97253 -12.67370 -12.56516 -12.45203 -12.40524 -12.10890 -11.90739 -11.75865 -11.66742 -11.36715 -11.21319 -11.14476 -10.71553 -10.49244 -9.75672 -9.62011 -8.70542 -8.22764 -5.37174 1.30825 1.39889 1.43860 1.47843 1.50065 1.76542 2.08535 2.43396 2.90610 3.06791 3.26556 3.29434 3.52421 3.82697 3.85284 3.98426 4.06625 4.07721 4.12659 4.20493 4.29305 4.39280 4.43279 4.48116 4.54627 4.59685 4.64417 4.66190 4.71702 4.75720 4.78387 4.85883 4.89131 4.93516 4.97371 5.14112 5.23517 5.27120 5.29808 5.42050 5.47976 5.58084 5.87878 6.00872 6.14612 6.37932 6.90184 7.00505 7.07772 7.63270 8.12315 8.96514 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.024355 B = 0.004541 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.391212 B = 6164.480653 C = 6629.380551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.620 5.620 3 C 0.121 3.879 4 C -0.116 4.116 5 H 0.152 0.848 6 C 0.528 3.472 7 O -0.569 6.569 8 N -0.590 5.590 9 C 0.094 3.906 10 C 0.143 3.857 11 H 0.061 0.939 12 C -0.120 4.120 13 C -0.139 4.139 14 C -0.123 4.123 15 C 0.145 3.855 16 H 0.093 0.907 17 C 0.085 3.915 18 N -0.599 5.599 19 C -0.250 4.250 20 H 0.055 0.945 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.316 1.316 26 H -0.263 1.263 27 C -0.160 4.160 28 C 0.516 3.484 29 O -0.573 6.573 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.126 0.874 44 H 0.069 0.931 45 H 0.261 0.739 46 H 0.136 0.864 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.810 1.661 -4.463 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.353 5.353 3 C -0.001 4.001 4 C -0.137 4.137 5 H 0.170 0.830 6 C 0.318 3.682 7 O -0.449 6.449 8 N -0.322 5.322 9 C -0.031 4.031 10 C 0.036 3.964 11 H 0.079 0.921 12 C -0.159 4.159 13 C -0.176 4.176 14 C -0.162 4.162 15 C 0.039 3.961 16 H 0.111 0.889 17 C -0.038 4.038 18 N -0.321 5.321 19 C -0.379 4.379 20 H 0.073 0.927 21 C -0.209 4.209 22 N -0.575 5.575 23 Si 0.735 3.265 24 H -0.197 1.197 25 H -0.245 1.245 26 H -0.189 1.189 27 C -0.199 4.199 28 C 0.304 3.696 29 O -0.453 6.453 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.144 0.856 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.153 0.847 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.113 1.586 -4.051 22.536 hybrid contribution 1.036 1.029 0.125 1.465 sum -21.077 2.615 -3.926 21.599 Atomic orbital electron populations 1.21760 0.76551 1.03564 1.03501 1.48344 1.07621 1.06999 1.72378 1.22025 0.87322 0.86738 1.04055 1.22282 0.93300 0.94313 1.03798 0.83000 1.20342 0.82992 0.83089 0.81726 1.90699 1.81912 1.33610 1.38706 1.48116 1.05070 1.35622 1.43348 1.22234 0.89595 0.94754 0.96500 1.21386 0.95098 0.89784 0.90119 0.92057 1.22071 0.97347 0.99358 0.97091 1.22414 0.97414 0.98943 0.98844 1.22025 0.99624 0.97289 0.97218 1.21547 0.87805 0.92976 0.93753 0.88879 1.22731 1.01123 0.88527 0.91424 1.44701 1.01605 1.41776 1.44048 1.18680 0.82600 0.94804 1.41773 0.92694 1.25670 0.94796 1.00423 0.99971 1.70168 1.07313 1.34145 1.45830 0.86612 0.75969 0.83935 0.80025 1.19734 1.24499 1.18877 1.22986 0.94591 0.95404 1.06963 1.21052 0.89786 0.84162 0.74551 1.90713 1.79210 1.22601 1.52741 0.91084 0.90640 0.89552 0.90237 0.86927 0.89286 0.93113 0.93463 0.92144 0.88887 0.92855 0.89068 0.93481 0.85626 0.91278 0.93011 0.84663 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 11.14 127.77 1.42 2.51 16 2 N -0.62 -10.48 3.33 -842.75 -2.81 -13.29 16 3 C 0.12 1.80 6.69 86.82 0.58 2.38 16 4 C -0.12 -1.85 2.54 -10.48 -0.03 -1.87 16 5 H 0.15 1.53 7.92 -2.39 -0.02 1.51 16 6 C 0.53 13.03 4.90 87.66 0.43 13.46 16 7 O -0.57 -17.49 14.93 -3.04 -0.05 -17.54 16 8 N -0.59 -16.62 1.65 -817.16 -1.35 -17.97 16 9 C 0.09 3.35 5.19 86.49 0.45 3.80 16 10 C 0.14 5.76 2.40 45.11 0.11 5.86 16 11 H 0.06 2.85 5.11 -2.39 -0.01 2.84 16 12 C -0.12 -4.20 5.70 31.15 0.18 -4.02 16 13 C -0.14 -3.98 3.87 31.03 0.12 -3.86 16 14 C -0.12 -3.39 5.11 30.72 0.16 -3.23 16 15 C 0.15 4.56 3.61 45.13 0.16 4.72 16 16 H 0.09 2.87 8.03 -2.39 -0.02 2.85 16 17 C 0.09 2.11 5.48 86.51 0.47 2.59 16 18 N -0.60 -25.20 2.26 -645.60 -1.46 -26.66 16 19 C -0.25 -13.06 10.00 84.04 0.84 -12.22 16 20 H 0.06 3.13 8.06 -2.91 -0.02 3.11 16 21 C -0.01 -0.62 4.94 84.86 0.42 -0.20 16 22 N -0.93 -56.01 13.97 21.65 0.30 -55.71 16 23 Si 0.91 43.26 23.46 68.60 1.61 44.87 16 24 H -0.27 -12.31 6.13 99.48 0.61 -11.70 16 25 H -0.32 -15.76 7.11 99.48 0.71 -15.06 16 26 H -0.26 -11.95 6.63 99.48 0.66 -11.29 16 27 C -0.16 -2.79 3.86 30.59 0.12 -2.67 16 28 C 0.52 11.27 8.03 87.90 0.71 11.98 16 29 O -0.57 -17.08 17.35 -3.03 -0.05 -17.14 16 30 H 0.07 1.09 7.53 -2.39 -0.02 1.07 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 1.47 7.01 -2.38 -0.02 1.45 16 34 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 3.16 6.98 -2.38 -0.02 3.14 16 36 H 0.05 1.98 4.58 -2.39 -0.01 1.97 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.09 2.52 1.47 -3.41 -0.01 2.52 16 40 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 41 H 0.09 1.90 5.93 -2.39 -0.01 1.89 16 42 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.13 1.99 3.98 -2.39 -0.01 1.98 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.14 1.84 5.92 -2.39 -0.01 1.83 16 47 H 0.12 2.35 4.16 -2.39 -0.01 2.34 16 Total: -1.00 -71.74 330.39 3.20 -68.54 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.86 Total: 15.66 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 6.14 Total: 19.23 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -5.31 Total: -113.63 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.10 Total: -34.68 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.61 Total: 44.87 kcal Total: -71.74 3.20 -68.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039615066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.330 kcal (2) G-P(sol) polarization free energy of solvation -71.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds