Wall clock time and date at job start Fri Apr 10 2020 18:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46765 * 124.34701 * 2 1 4 4 C 1.54477 * 105.47606 * 162.98360 * 3 2 1 5 5 C 1.54629 * 101.76226 * 25.41290 * 4 3 2 6 6 H 1.08994 * 110.48782 * 94.01516 * 5 4 3 7 7 C 1.50700 * 110.48723 * 216.52729 * 5 4 3 8 8 O 1.21281 * 120.00087 * 21.09448 * 7 5 4 9 9 N 1.34771 * 120.00227 * 201.09847 * 7 5 4 10 10 C 1.46941 * 120.44365 * 3.77443 * 9 7 5 11 11 C 1.53592 * 108.55217 * 125.77332 * 10 9 7 12 12 H 1.09005 * 110.59730 * 172.12976 * 11 10 9 13 13 C 1.53362 * 109.20273 * 294.05483 * 11 10 9 14 14 C 1.54224 * 108.65102 * 59.92990 * 13 11 10 15 15 C 1.53001 * 109.59980 * 61.06363 * 14 13 11 16 16 C 1.53364 * 109.30748 * 299.18596 * 15 14 13 17 17 H 1.08998 * 110.60022 * 177.47740 * 16 15 14 18 18 C 1.48290 * 120.14536 * 183.77243 * 9 7 5 19 19 N 1.47569 * 107.98151 * 56.32795 * 16 15 14 20 20 C 1.36937 * 121.61271 * 122.25915 * 19 16 15 21 21 H 1.08004 * 120.00120 * 324.91954 * 20 19 16 22 22 C 1.38816 * 120.00116 * 144.92411 * 20 19 16 23 23 N 1.31620 * 120.00142 * 149.56695 * 22 20 19 24 24 Si 1.86799 * 119.99897 * 329.56103 * 22 20 19 25 25 H 1.48502 * 109.47191 * 85.99950 * 24 22 20 26 26 H 1.48505 * 109.47106 * 205.99780 * 24 22 20 27 27 H 1.48497 * 109.47193 * 325.99742 * 24 22 20 28 28 C 1.34412 * 124.35171 * 179.97438 * 2 1 3 29 29 O 1.21282 * 124.94012 * 0.45049 * 28 2 1 30 30 H 1.08998 * 109.46724 * 90.00430 * 1 2 3 31 31 H 1.08996 * 109.47053 * 210.00342 * 1 2 3 32 32 H 1.09001 * 109.47252 * 329.99743 * 1 2 3 33 33 H 1.08998 * 110.24669 * 43.97749 * 3 2 1 34 34 H 1.09005 * 110.31976 * 282.02181 * 3 2 1 35 35 H 1.09003 * 110.96798 * 267.29778 * 4 3 2 36 36 H 1.09000 * 111.00432 * 143.54403 * 4 3 2 37 37 H 1.09005 * 109.61907 * 6.05795 * 10 9 7 38 38 H 1.09002 * 109.78340 * 245.59244 * 10 9 7 39 39 H 1.09003 * 109.51123 * 180.47053 * 13 11 10 40 40 H 1.09000 * 109.50627 * 300.55905 * 13 11 10 41 41 H 1.09002 * 109.73473 * 300.88546 * 14 13 11 42 42 H 1.09000 * 109.29565 * 180.97284 * 14 13 11 43 43 H 1.09004 * 109.50417 * 179.23164 * 15 14 13 44 44 H 1.08998 * 109.50694 * 59.15051 * 15 14 13 45 45 H 1.09003 * 109.52904 * 114.66528 * 18 9 7 46 46 H 1.09001 * 110.41019 * 353.66941 * 18 9 7 47 47 H 0.96994 * 120.00276 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7489 0.4357 5 6 3.6899 -0.7377 0.0102 6 1 4.1216 -0.8532 -0.9839 7 6 4.4404 -1.5784 1.0107 8 8 4.6127 -1.1686 2.1391 9 7 4.9201 -2.7855 0.6516 10 6 4.7895 -3.2564 -0.7342 11 6 6.1826 -3.6446 -1.2517 12 1 6.1088 -4.1279 -2.2260 13 6 7.0570 -2.3876 -1.3379 14 6 7.1692 -1.7674 0.0697 15 6 7.8300 -2.7679 1.0202 16 6 6.9674 -4.0332 1.1043 17 1 7.4416 -4.7789 1.7422 18 6 5.5856 -3.6510 1.6551 19 7 6.7917 -4.5565 -0.2642 20 6 7.1756 -5.8269 -0.6017 21 1 8.0540 -6.2636 -0.1498 22 6 6.4358 -6.5535 -1.5246 23 7 7.0309 -7.4420 -2.2920 24 14 4.5957 -6.2705 -1.6773 25 1 4.3441 -5.1419 -2.6092 26 1 3.9477 -7.4994 -2.2018 27 1 4.0325 -5.9451 -0.3424 28 6 2.2235 -1.1097 0.0005 29 8 1.7947 -2.2441 -0.0068 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.8984 1.9384 0.7101 34 1 2.3309 1.6444 -0.9998 35 1 3.8269 0.8450 1.5141 36 1 4.4758 1.3010 -0.0962 37 1 4.3776 -2.4599 -1.3541 38 1 4.1312 -4.1244 -0.7685 39 1 8.0447 -2.6563 -1.7127 40 1 6.5946 -1.6682 -2.0136 41 1 6.1759 -1.5161 0.4414 42 1 7.7750 -0.8628 0.0174 43 1 7.9209 -2.3230 2.0111 44 1 8.8202 -3.0267 0.6452 45 1 4.9915 -4.5516 1.8108 46 1 5.7021 -3.1183 2.5989 47 1 6.5140 -7.9500 -2.9366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039848930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:27 Heat of formation + Delta-G solvation = 3.742878 kcal Electronic energy + Delta-G solvation = -30253.873036 eV Core-core repulsion = 26438.952319 eV Total energy + Delta-G solvation = -3814.920717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41181 -39.96589 -37.83707 -36.53357 -34.01989 -33.20495 -32.83974 -32.07148 -30.92410 -28.50148 -27.12385 -26.71366 -25.78633 -23.73893 -22.58430 -21.81341 -21.31980 -20.53547 -19.08805 -18.26541 -17.85813 -16.88453 -16.59407 -16.32204 -15.80469 -15.17781 -15.03658 -14.80762 -14.06047 -14.00385 -13.81415 -13.76883 -13.48064 -13.14630 -13.02686 -12.91440 -12.77183 -12.74376 -12.65594 -12.44406 -12.13687 -12.01242 -11.58247 -11.36911 -11.28991 -11.00805 -10.60306 -10.49525 -10.41338 -10.22975 -10.02373 -9.90310 -9.83131 -9.60494 -9.37987 -8.97455 -8.53496 -8.00227 -6.81401 -6.08665 -3.39737 2.25648 2.59288 2.91342 3.27500 3.29757 3.49142 3.53916 4.12691 4.15334 4.48324 4.53618 4.68481 4.73548 4.86363 4.96332 5.03366 5.16933 5.21051 5.24666 5.41484 5.45276 5.49192 5.55392 5.56495 5.58229 5.62277 5.80143 5.85681 5.94918 6.11571 6.19721 6.20769 6.23017 6.29175 6.30084 6.38302 6.55095 6.70423 6.72968 6.74655 6.79346 6.91217 7.00868 7.69567 7.92525 7.95949 8.29325 8.31825 8.87175 9.64074 10.11495 11.06646 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.005545 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.097114 B = 5048.640723 C = 5988.121817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.624 5.624 3 C 0.104 3.896 4 C -0.119 4.119 5 C -0.157 4.157 6 H 0.131 0.869 7 C 0.537 3.463 8 O -0.548 6.548 9 N -0.578 5.578 10 C 0.082 3.918 11 C 0.147 3.853 12 H 0.093 0.907 13 C -0.124 4.124 14 C -0.138 4.138 15 C -0.121 4.121 16 C 0.154 3.846 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.588 5.588 20 C -0.266 4.266 21 H 0.081 0.919 22 C 0.042 3.958 23 N -0.887 5.887 24 Si 0.858 3.142 25 H -0.283 1.283 26 H -0.302 1.302 27 H -0.269 1.269 28 C 0.531 3.469 29 O -0.510 6.510 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.039 0.961 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.068 19.238 2.859 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.359 5.359 3 C -0.019 4.019 4 C -0.157 4.157 5 C -0.181 4.181 6 H 0.149 0.851 7 C 0.324 3.676 8 O -0.427 6.427 9 N -0.309 5.309 10 C -0.042 4.042 11 C 0.039 3.961 12 H 0.111 0.889 13 C -0.163 4.163 14 C -0.175 4.175 15 C -0.160 4.160 16 C 0.046 3.954 17 H 0.106 0.894 18 C -0.027 4.027 19 N -0.310 5.310 20 C -0.394 4.394 21 H 0.099 0.901 22 C -0.159 4.159 23 N -0.527 5.527 24 Si 0.687 3.313 25 H -0.210 1.210 26 H -0.229 1.229 27 H -0.195 1.195 28 C 0.317 3.683 29 O -0.384 6.384 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.277 18.604 3.309 20.629 hybrid contribution -1.263 0.024 -0.464 1.346 sum -9.541 18.628 2.845 21.121 Atomic orbital electron populations 1.21551 0.77651 1.03243 1.01943 1.48074 1.06589 1.07193 1.74087 1.22150 0.90529 0.87251 1.01975 1.22658 0.96392 0.91863 1.04803 1.22249 0.95301 0.97822 1.02735 0.85120 1.19298 0.78665 0.81742 0.87862 1.90657 1.59714 1.71466 1.20849 1.48330 1.55282 1.16151 1.11163 1.22770 1.00206 0.99984 0.81199 1.21439 0.89418 0.90899 0.94324 0.88920 1.22187 1.01063 0.96932 0.96132 1.22284 1.02282 0.97121 0.95862 1.21879 0.99433 0.96484 0.98174 1.21329 0.91901 0.94289 0.87849 0.89417 1.22619 0.95541 0.93372 0.91158 1.44618 1.72313 1.11012 1.03076 1.18722 1.07080 0.89236 1.24374 0.90114 1.25426 0.97322 0.95909 0.97257 1.69978 1.35396 1.27029 1.20251 0.87415 0.89314 0.76179 0.78347 1.21035 1.22934 1.19467 1.20217 0.87745 0.84652 0.75735 1.90797 1.77954 1.20738 1.48947 0.92461 0.90630 0.90904 0.89949 0.90762 0.87807 0.88551 0.90992 0.90715 0.91438 0.93509 0.90088 0.94248 0.93023 0.92132 0.91367 0.89410 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 10.96 59.85 0.66 1.50 16 2 N -0.62 -6.94 3.33 -180.29 -0.60 -7.54 16 3 C 0.10 0.79 7.35 -3.12 -0.02 0.77 16 4 C -0.12 -1.14 6.62 -25.10 -0.17 -1.31 16 5 C -0.16 -2.13 2.48 -91.78 -0.23 -2.36 16 6 H 0.13 1.60 6.21 -51.93 -0.32 1.28 16 7 C 0.54 9.26 4.11 -10.99 -0.05 9.21 16 8 O -0.55 -10.33 14.99 5.56 0.08 -10.25 16 9 N -0.58 -10.86 1.67 -171.15 -0.29 -11.14 16 10 C 0.08 1.62 5.11 -3.49 -0.02 1.60 16 11 C 0.15 3.04 2.41 -66.85 -0.16 2.88 16 12 H 0.09 2.11 5.74 -51.93 -0.30 1.82 16 13 C -0.12 -2.16 5.69 -25.90 -0.15 -2.31 16 14 C -0.14 -2.27 5.58 -26.09 -0.15 -2.42 16 15 C -0.12 -2.09 5.57 -26.54 -0.15 -2.24 16 16 C 0.15 3.00 3.58 -66.85 -0.24 2.76 16 17 H 0.09 1.69 8.01 -51.93 -0.42 1.28 16 18 C 0.10 1.84 5.97 -2.75 -0.02 1.82 16 19 N -0.59 -13.38 2.13 -155.44 -0.33 -13.72 16 20 C -0.27 -7.16 9.97 -15.06 -0.15 -7.31 16 21 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 22 C 0.04 1.19 5.00 -17.43 -0.09 1.10 16 23 N -0.89 -26.28 13.97 55.49 0.78 -25.51 16 24 Si 0.86 21.82 23.29 -169.99 -3.96 17.86 16 25 H -0.28 -6.81 6.37 56.52 0.36 -6.45 16 26 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 27 H -0.27 -6.97 6.54 56.52 0.37 -6.60 16 28 C 0.53 8.07 7.44 -10.86 -0.08 7.99 16 29 O -0.51 -9.92 17.43 5.56 0.10 -9.82 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.77 7.93 -51.93 -0.41 0.35 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 1.15 6.89 -51.93 -0.36 0.80 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.22 5.40 -51.93 -0.28 0.94 16 38 H 0.07 1.70 4.02 -51.93 -0.21 1.49 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.36 2.52 -52.36 -0.13 1.23 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.09 1.58 7.05 -51.93 -0.37 1.21 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -33.64 344.36 -7.11 -40.75 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.07 Total: 2.48 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -1.00 Total: 11.70 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.44 Total: -57.91 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.18 Total: -20.07 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -3.96 Total: 17.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.64 -7.11 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039848930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.492 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds