Wall clock time and date at job start Fri Apr 10 2020 18:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46765 * 124.34701 * 2 1 4 4 C 1.54477 * 105.47606 * 162.98360 * 3 2 1 5 5 C 1.54629 * 101.76226 * 25.41290 * 4 3 2 6 6 H 1.08994 * 110.48782 * 94.01516 * 5 4 3 7 7 C 1.50700 * 110.48723 * 216.52729 * 5 4 3 8 8 O 1.21281 * 120.00087 * 21.09448 * 7 5 4 9 9 N 1.34771 * 120.00227 * 201.09847 * 7 5 4 10 10 C 1.46941 * 120.44365 * 3.77443 * 9 7 5 11 11 C 1.53592 * 108.55217 * 125.77332 * 10 9 7 12 12 H 1.09005 * 110.59730 * 172.12976 * 11 10 9 13 13 C 1.53362 * 109.20273 * 294.05483 * 11 10 9 14 14 C 1.54224 * 108.65102 * 59.92990 * 13 11 10 15 15 C 1.53001 * 109.59980 * 61.06363 * 14 13 11 16 16 C 1.53364 * 109.30748 * 299.18596 * 15 14 13 17 17 H 1.08998 * 110.60022 * 177.47740 * 16 15 14 18 18 C 1.48290 * 120.14536 * 183.77243 * 9 7 5 19 19 N 1.47569 * 107.98151 * 56.32795 * 16 15 14 20 20 C 1.36937 * 121.61271 * 122.25915 * 19 16 15 21 21 H 1.08004 * 120.00120 * 324.91954 * 20 19 16 22 22 C 1.38816 * 120.00116 * 144.92411 * 20 19 16 23 23 N 1.31620 * 120.00142 * 149.56695 * 22 20 19 24 24 Si 1.86799 * 119.99897 * 329.56103 * 22 20 19 25 25 H 1.48502 * 109.47191 * 85.99950 * 24 22 20 26 26 H 1.48505 * 109.47106 * 205.99780 * 24 22 20 27 27 H 1.48497 * 109.47193 * 325.99742 * 24 22 20 28 28 C 1.34412 * 124.35171 * 179.97438 * 2 1 3 29 29 O 1.21282 * 124.94012 * 0.45049 * 28 2 1 30 30 H 1.08998 * 109.46724 * 90.00430 * 1 2 3 31 31 H 1.08996 * 109.47053 * 210.00342 * 1 2 3 32 32 H 1.09001 * 109.47252 * 329.99743 * 1 2 3 33 33 H 1.08998 * 110.24669 * 43.97749 * 3 2 1 34 34 H 1.09005 * 110.31976 * 282.02181 * 3 2 1 35 35 H 1.09003 * 110.96798 * 267.29778 * 4 3 2 36 36 H 1.09000 * 111.00432 * 143.54403 * 4 3 2 37 37 H 1.09005 * 109.61907 * 6.05795 * 10 9 7 38 38 H 1.09002 * 109.78340 * 245.59244 * 10 9 7 39 39 H 1.09003 * 109.51123 * 180.47053 * 13 11 10 40 40 H 1.09000 * 109.50627 * 300.55905 * 13 11 10 41 41 H 1.09002 * 109.73473 * 300.88546 * 14 13 11 42 42 H 1.09000 * 109.29565 * 180.97284 * 14 13 11 43 43 H 1.09004 * 109.50417 * 179.23164 * 15 14 13 44 44 H 1.08998 * 109.50694 * 59.15051 * 15 14 13 45 45 H 1.09003 * 109.52904 * 114.66528 * 18 9 7 46 46 H 1.09001 * 110.41019 * 353.66941 * 18 9 7 47 47 H 0.96994 * 120.00276 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7489 0.4357 5 6 3.6899 -0.7377 0.0102 6 1 4.1216 -0.8532 -0.9839 7 6 4.4404 -1.5784 1.0107 8 8 4.6127 -1.1686 2.1391 9 7 4.9201 -2.7855 0.6516 10 6 4.7895 -3.2564 -0.7342 11 6 6.1826 -3.6446 -1.2517 12 1 6.1088 -4.1279 -2.2260 13 6 7.0570 -2.3876 -1.3379 14 6 7.1692 -1.7674 0.0697 15 6 7.8300 -2.7679 1.0202 16 6 6.9674 -4.0332 1.1043 17 1 7.4416 -4.7789 1.7422 18 6 5.5856 -3.6510 1.6551 19 7 6.7917 -4.5565 -0.2642 20 6 7.1756 -5.8269 -0.6017 21 1 8.0540 -6.2636 -0.1498 22 6 6.4358 -6.5535 -1.5246 23 7 7.0309 -7.4420 -2.2920 24 14 4.5957 -6.2705 -1.6773 25 1 4.3441 -5.1419 -2.6092 26 1 3.9477 -7.4994 -2.2018 27 1 4.0325 -5.9451 -0.3424 28 6 2.2235 -1.1097 0.0005 29 8 1.7947 -2.2441 -0.0068 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.8984 1.9384 0.7101 34 1 2.3309 1.6444 -0.9998 35 1 3.8269 0.8450 1.5141 36 1 4.4758 1.3010 -0.0962 37 1 4.3776 -2.4599 -1.3541 38 1 4.1312 -4.1244 -0.7685 39 1 8.0447 -2.6563 -1.7127 40 1 6.5946 -1.6682 -2.0136 41 1 6.1759 -1.5161 0.4414 42 1 7.7750 -0.8628 0.0174 43 1 7.9209 -2.3230 2.0111 44 1 8.8202 -3.0267 0.6452 45 1 4.9915 -4.5516 1.8108 46 1 5.7021 -3.1183 2.5989 47 1 6.5140 -7.9500 -2.9366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039848930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:26 Heat of formation + Delta-G solvation = -19.523883 kcal Electronic energy + Delta-G solvation = -30254.881958 eV Core-core repulsion = 26438.952319 eV Total energy + Delta-G solvation = -3815.929640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.66758 -41.18179 -39.27522 -37.57799 -35.66452 -34.75999 -34.09983 -33.42903 -32.78197 -29.58721 -28.37164 -27.78658 -27.18646 -25.51614 -23.74768 -23.34025 -22.66741 -21.64419 -20.28464 -19.97785 -19.18229 -18.27766 -17.87946 -17.46144 -17.06860 -16.83974 -16.40389 -16.05231 -15.55512 -15.51381 -15.18149 -15.00764 -14.74541 -14.63065 -14.53605 -14.31796 -14.25275 -13.81281 -13.70339 -13.54076 -13.31211 -13.19319 -12.98314 -12.80580 -12.68604 -12.48192 -12.29333 -11.98723 -11.94379 -11.80349 -11.66531 -11.45969 -11.24410 -11.05792 -10.87672 -10.57167 -9.79452 -9.62382 -8.64170 -8.27707 -5.52672 1.09181 1.22786 1.37661 1.44495 1.46166 1.83224 2.09131 2.35497 2.91844 3.12953 3.21128 3.23850 3.56103 3.80196 3.88692 3.97299 4.00101 4.08934 4.14072 4.17377 4.31792 4.33658 4.37452 4.46519 4.55003 4.61378 4.65610 4.69204 4.71342 4.75767 4.78837 4.82374 4.97923 5.02240 5.14960 5.17040 5.24256 5.26336 5.32834 5.39094 5.47374 5.60101 5.87960 5.91370 6.12399 6.30022 6.88504 6.93269 6.95327 7.56187 8.08677 8.92262 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.005545 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.097114 B = 5048.640723 C = 5988.121817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.617 5.617 3 C 0.102 3.898 4 C -0.111 4.111 5 C -0.158 4.158 6 H 0.148 0.852 7 C 0.537 3.463 8 O -0.564 6.564 9 N -0.586 5.586 10 C 0.092 3.908 11 C 0.139 3.861 12 H 0.068 0.932 13 C -0.116 4.116 14 C -0.133 4.133 15 C -0.114 4.114 16 C 0.149 3.851 17 H 0.080 0.920 18 C 0.102 3.898 19 N -0.601 5.601 20 C -0.250 4.250 21 H 0.051 0.949 22 C 0.000 4.000 23 N -0.931 5.931 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.313 1.313 27 H -0.282 1.282 28 C 0.515 3.485 29 O -0.569 6.569 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.040 0.960 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.043 0.957 46 H 0.101 0.899 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 24.120 2.614 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.350 5.350 3 C -0.019 4.019 4 C -0.149 4.149 5 C -0.182 4.182 6 H 0.166 0.834 7 C 0.326 3.674 8 O -0.444 6.444 9 N -0.317 5.317 10 C -0.033 4.033 11 C 0.032 3.968 12 H 0.087 0.913 13 C -0.155 4.155 14 C -0.171 4.171 15 C -0.153 4.153 16 C 0.042 3.958 17 H 0.098 0.902 18 C -0.022 4.022 19 N -0.324 5.324 20 C -0.380 4.380 21 H 0.068 0.932 22 C -0.198 4.198 23 N -0.575 5.575 24 Si 0.743 3.257 25 H -0.188 1.188 26 H -0.242 1.242 27 H -0.209 1.209 28 C 0.301 3.699 29 O -0.449 6.449 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.119 0.881 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.224 23.604 3.078 25.529 hybrid contribution -0.973 -1.417 -0.265 1.739 sum -10.197 22.187 2.813 24.580 Atomic orbital electron populations 1.21757 0.76382 1.03846 1.02996 1.48308 1.07675 1.07319 1.71716 1.22494 0.88683 0.86054 1.04645 1.22761 0.98816 0.89049 1.04293 1.22361 0.93789 0.99569 1.02434 0.83441 1.19917 0.77878 0.81170 0.88407 1.90645 1.60114 1.71766 1.21876 1.48358 1.56002 1.16831 1.10552 1.22556 0.98587 0.99850 0.82271 1.21541 0.90755 0.91860 0.92609 0.91346 1.22097 0.99777 0.95849 0.97729 1.22254 1.02690 0.97515 0.94619 1.21797 0.98376 0.95445 0.99673 1.21447 0.92813 0.95382 0.86116 0.90189 1.22429 0.94701 0.93007 0.92032 1.44719 1.72464 1.10071 1.05123 1.18648 1.05569 0.90891 1.22878 0.93163 1.25794 0.99916 0.96338 0.97792 1.70055 1.36431 1.29065 1.21901 0.86536 0.85302 0.75998 0.77880 1.18810 1.24213 1.20915 1.20601 0.88843 0.84767 0.75668 1.90769 1.78961 1.23093 1.52028 0.91199 0.92966 0.87364 0.87219 0.87546 0.89386 0.85150 0.87883 0.94175 0.92659 0.89800 0.89962 0.91551 0.91154 0.92893 0.93812 0.88129 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 10.96 127.77 1.40 2.71 16 2 N -0.62 -11.57 3.33 -842.89 -2.81 -14.38 16 3 C 0.10 1.00 7.35 86.83 0.64 1.63 16 4 C -0.11 -1.58 6.62 31.65 0.21 -1.37 16 5 C -0.16 -3.73 2.48 -11.55 -0.03 -3.76 16 6 H 0.15 2.93 6.21 -2.39 -0.01 2.91 16 7 C 0.54 17.28 4.11 87.66 0.36 17.64 16 8 O -0.56 -20.02 14.99 -3.03 -0.05 -20.07 16 9 N -0.59 -21.30 1.67 -813.79 -1.36 -22.66 16 10 C 0.09 3.50 5.11 86.49 0.44 3.94 16 11 C 0.14 5.65 2.41 45.11 0.11 5.76 16 12 H 0.07 3.11 5.74 -2.38 -0.01 3.09 16 13 C -0.12 -3.70 5.69 31.13 0.18 -3.52 16 14 C -0.13 -3.93 5.58 31.01 0.17 -3.75 16 15 C -0.11 -3.75 5.57 30.72 0.17 -3.57 16 16 C 0.15 5.84 3.58 45.11 0.16 6.00 16 17 H 0.08 3.19 8.01 -2.39 -0.02 3.17 16 18 C 0.10 3.89 5.97 86.23 0.51 4.40 16 19 N -0.60 -27.73 2.13 -645.68 -1.38 -29.11 16 20 C -0.25 -13.98 9.97 84.03 0.84 -13.14 16 21 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 22 C 0.00 -0.03 5.00 84.86 0.42 0.40 16 23 N -0.93 -57.37 13.97 21.65 0.30 -57.06 16 24 Si 0.91 47.14 23.29 68.60 1.60 48.74 16 25 H -0.26 -12.44 6.37 99.48 0.63 -11.81 16 26 H -0.31 -16.62 7.11 99.48 0.71 -15.91 16 27 H -0.28 -15.06 6.54 99.48 0.65 -14.41 16 28 C 0.51 14.59 7.44 87.90 0.65 15.24 16 29 O -0.57 -22.09 17.43 -3.03 -0.05 -22.14 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 1.01 7.93 -2.39 -0.02 0.99 16 32 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.09 1.59 6.89 -2.39 -0.02 1.58 16 36 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 3.23 5.40 -2.38 -0.01 3.22 16 38 H 0.04 1.83 4.02 -2.39 -0.01 1.82 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.08 2.46 2.52 -3.23 -0.01 2.45 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.10 3.56 7.05 -2.39 -0.02 3.54 16 47 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -78.17 344.36 3.36 -74.81 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.85 Total: 13.26 kcal Atomic # 6 Polarization: 22.37 SS G_CDS: 6.24 Total: 28.61 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -5.24 Total: -123.21 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.10 Total: -42.21 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.60 Total: 48.74 kcal Total: -78.17 3.36 -74.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039848930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.289 kcal (2) G-P(sol) polarization free energy of solvation -78.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds