Wall clock time and date at job start Fri Apr 10 2020 18:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34421 * 124.35250 * 2 1 4 4 O 1.21284 * 124.94006 * 0.40539 * 3 2 1 5 5 C 1.51284 * 110.11982 * 180.38532 * 3 2 1 6 6 C 1.54627 * 104.19332 * 16.25389 * 5 3 2 7 7 C 1.46767 * 124.34983 * 179.97438 * 2 1 3 8 8 H 1.08999 * 110.24648 * 282.00245 * 7 2 1 9 9 C 1.50699 * 110.24570 * 43.91951 * 7 2 1 10 10 O 1.21283 * 119.99680 * 17.36372 * 9 7 2 11 11 N 1.34771 * 120.00037 * 197.37128 * 9 7 2 12 12 C 1.46940 * 120.44318 * 179.97438 * 11 9 7 13 13 C 1.53597 * 108.52632 * 125.75003 * 12 11 9 14 14 H 1.09001 * 110.59704 * 172.77666 * 13 12 11 15 15 C 1.53363 * 108.69280 * 294.36727 * 13 12 11 16 16 C 1.53015 * 109.27668 * 60.30930 * 15 13 12 17 17 C 1.53009 * 109.79480 * 60.55970 * 16 15 13 18 18 C 1.53374 * 109.25423 * 299.42131 * 17 16 15 19 19 H 1.08992 * 110.59888 * 177.54091 * 18 17 16 20 20 C 1.46951 * 120.44231 * 359.72054 * 11 9 7 21 21 N 1.47569 * 107.98334 * 56.38802 * 18 17 16 22 22 C 1.36934 * 121.60953 * 122.22628 * 21 18 17 23 23 H 1.08006 * 119.99726 * 207.00347 * 22 21 18 24 24 C 1.38809 * 120.00215 * 27.00217 * 22 21 18 25 25 N 1.31622 * 119.99709 * 18.50105 * 24 22 21 26 26 Si 1.86797 * 120.00211 * 198.50217 * 24 22 21 27 27 H 1.48501 * 109.47188 * 60.00127 * 26 24 22 28 28 H 1.48503 * 109.47253 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47050 * 299.99903 * 26 24 22 30 30 H 1.09005 * 109.46740 * 270.02821 * 1 2 3 31 31 H 1.08997 * 109.47066 * 30.02216 * 1 2 3 32 32 H 1.08998 * 109.47028 * 150.02650 * 1 2 3 33 33 H 1.09002 * 110.48629 * 134.92857 * 5 3 2 34 34 H 1.08990 * 110.48402 * 257.57312 * 5 3 2 35 35 H 1.08994 * 110.96864 * 217.08343 * 6 5 3 36 36 H 1.08997 * 110.97478 * 93.31835 * 6 5 3 37 37 H 1.09002 * 109.63153 * 245.46272 * 12 11 9 38 38 H 1.09004 * 109.63066 * 5.85149 * 12 11 9 39 39 H 1.09004 * 109.50679 * 180.24974 * 15 13 12 40 40 H 1.08999 * 109.50671 * 300.33493 * 15 13 12 41 41 H 1.08995 * 109.41509 * 180.65687 * 16 15 13 42 42 H 1.08995 * 109.41374 * 300.46091 * 16 15 13 43 43 H 1.08990 * 109.51420 * 59.35691 * 17 16 15 44 44 H 1.09007 * 109.50502 * 179.49079 * 17 16 15 45 45 H 1.09004 * 109.62275 * 353.94574 * 20 11 9 46 46 H 1.08999 * 109.62508 * 114.50674 * 20 11 9 47 47 H 0.97001 * 119.99592 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7947 2.2442 0.0070 5 6 3.6899 0.7378 -0.0096 6 6 3.7012 -0.7488 -0.4348 7 6 2.2931 -1.2117 0.0005 8 1 2.3304 -1.6427 1.0010 9 6 1.7465 -2.2173 -0.9797 10 8 0.9691 -1.8640 -1.8409 11 7 2.1215 -3.5094 -0.8993 12 6 1.5941 -4.4982 -1.8497 13 6 2.7782 -5.2189 -2.5114 14 1 2.4273 -6.0464 -3.1280 15 6 3.5578 -4.2067 -3.3598 16 6 4.0758 -3.0844 -2.4580 17 6 5.0096 -3.6642 -1.3936 18 6 4.2352 -4.6738 -0.5372 19 1 4.8917 -5.1331 0.2017 20 6 3.0675 -3.9470 0.1365 21 7 3.6708 -5.6973 -1.4381 22 6 3.9619 -7.0266 -1.2859 23 1 3.9275 -7.6881 -2.1390 24 6 4.3013 -7.5241 -0.0352 25 7 4.0008 -6.8404 1.0486 26 14 5.1846 -9.1636 0.1097 27 1 6.4805 -9.0933 -0.6121 28 1 5.4311 -9.4682 1.5421 29 1 4.3437 -10.2332 -0.4856 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 4.2329 1.3458 -0.7332 34 1 4.1191 0.8532 0.9856 35 1 4.4754 -1.3010 0.0978 36 1 3.8274 -0.8451 -1.5132 37 1 0.9750 -5.2218 -1.3195 38 1 0.9979 -3.9936 -2.6100 39 1 4.3996 -4.7059 -3.8397 40 1 2.9006 -3.7878 -4.1219 41 1 4.6204 -2.3575 -3.0606 42 1 3.2335 -2.5923 -1.9719 43 1 5.8475 -4.1652 -1.8782 44 1 5.3828 -2.8598 -0.7596 45 1 3.4425 -3.0796 0.6798 46 1 2.5665 -4.6259 0.8266 47 1 4.2376 -7.1882 1.9226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039863726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:33 Heat of formation + Delta-G solvation = -20.154513 kcal Electronic energy + Delta-G solvation = -30266.725780 eV Core-core repulsion = 26450.768794 eV Total energy + Delta-G solvation = -3815.956986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.64829 -41.04469 -39.21665 -37.29241 -35.61741 -34.62204 -33.95931 -33.31919 -31.99529 -29.88600 -28.09396 -27.64147 -27.01273 -25.40321 -23.84377 -22.85468 -22.72073 -21.43433 -20.32217 -19.92477 -18.71848 -18.19562 -17.59510 -17.11465 -16.96064 -16.54136 -16.28508 -15.89024 -15.56261 -15.22645 -15.07876 -14.79245 -14.66607 -14.55860 -14.41610 -14.11430 -13.86837 -13.67516 -13.50302 -13.41834 -13.07268 -12.94009 -12.79401 -12.74871 -12.59657 -12.35257 -12.17836 -12.08849 -11.84183 -11.66337 -11.55640 -11.17409 -11.05382 -10.98950 -10.78224 -10.53963 -9.76635 -9.38443 -8.41777 -7.81484 -5.20999 1.41339 1.46225 1.52104 1.55711 1.59850 1.80869 2.18487 2.56833 3.22655 3.32535 3.33719 3.53587 3.56396 3.92630 4.00902 4.13993 4.21424 4.27881 4.30837 4.33387 4.38264 4.45337 4.52992 4.59253 4.68498 4.77533 4.80978 4.82243 4.85439 4.89861 4.93860 5.00212 5.07813 5.11726 5.18546 5.29248 5.34072 5.38382 5.51708 5.54725 5.66639 5.72678 5.91089 6.01309 6.43236 6.50936 7.01125 7.12265 7.22651 7.88272 8.46274 9.23538 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.022424 B = 0.004239 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.364236 B = 6603.617908 C = 6772.964375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.603 5.603 3 C 0.508 3.492 4 O -0.579 6.579 5 C -0.139 4.139 6 C -0.123 4.123 7 C 0.111 3.889 8 H 0.127 0.873 9 C 0.508 3.492 10 O -0.573 6.573 11 N -0.582 5.582 12 C 0.108 3.892 13 C 0.149 3.851 14 H 0.070 0.930 15 C -0.118 4.118 16 C -0.137 4.137 17 C -0.125 4.125 18 C 0.172 3.828 19 H 0.089 0.911 20 C 0.109 3.891 21 N -0.593 5.593 22 C -0.258 4.258 23 H 0.056 0.944 24 C -0.031 4.031 25 N -0.915 5.915 26 Si 0.953 3.047 27 H -0.286 1.286 28 H -0.294 1.294 29 H -0.287 1.287 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.058 0.942 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.297 10.150 0.034 10.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.335 5.335 3 C 0.299 3.701 4 O -0.459 6.459 5 C -0.179 4.179 6 C -0.160 4.160 7 C 0.004 3.996 8 H 0.144 0.856 9 C 0.298 3.702 10 O -0.453 6.453 11 N -0.313 5.313 12 C -0.017 4.017 13 C 0.042 3.958 14 H 0.088 0.912 15 C -0.157 4.157 16 C -0.175 4.175 17 C -0.164 4.164 18 C 0.066 3.934 19 H 0.106 0.894 20 C -0.014 4.014 21 N -0.314 5.314 22 C -0.388 4.388 23 H 0.074 0.926 24 C -0.228 4.228 25 N -0.560 5.560 26 Si 0.783 3.217 27 H -0.212 1.212 28 H -0.220 1.220 29 H -0.213 1.213 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.138 0.862 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.076 0.924 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.594 10.803 -0.230 10.821 hybrid contribution -0.047 -1.597 -0.014 1.598 sum 0.547 9.206 -0.244 9.225 Atomic orbital electron populations 1.21652 0.77891 1.03341 1.02060 1.48034 1.06968 1.06348 1.72198 1.21633 0.91145 0.83434 0.73936 1.90684 1.79909 1.22432 1.52888 1.22421 0.91618 0.96642 1.07170 1.22965 0.93262 0.95815 1.03990 1.21898 0.92686 0.84977 1.00088 0.85564 1.20729 0.80968 0.83053 0.85499 1.90666 1.37164 1.79360 1.38158 1.48234 1.44238 1.06856 1.31994 1.22039 0.96736 0.90452 0.92454 1.21298 0.89594 0.94679 0.90241 0.91231 1.21848 0.99287 0.97031 0.97549 1.22191 1.00497 0.97303 0.97533 1.22085 0.97649 0.98662 0.97989 1.21037 0.92900 0.87405 0.92095 0.89363 1.22257 0.90944 0.99182 0.89045 1.44519 1.51623 1.02221 1.33066 1.19266 1.41181 0.85892 0.92510 0.92631 1.25387 1.02137 1.00049 0.95266 1.70020 1.48858 1.40228 0.96889 0.85581 0.78996 0.81141 0.75991 1.21217 1.22004 1.21345 0.91240 0.91713 0.90731 0.86198 0.84372 0.84997 0.89555 0.93377 0.90036 0.93380 0.92553 0.92962 0.89428 0.94139 0.89804 0.88034 0.92375 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.37 10.42 127.77 1.33 3.71 16 2 N -0.60 -15.50 3.01 -823.05 -2.47 -17.98 16 3 C 0.51 13.37 8.02 87.90 0.71 14.07 16 4 O -0.58 -19.80 17.60 -3.04 -0.05 -19.86 16 5 C -0.14 -2.23 6.86 30.59 0.21 -2.02 16 6 C -0.12 -2.08 5.16 31.65 0.16 -1.92 16 7 C 0.11 2.49 2.72 44.70 0.12 2.61 16 8 H 0.13 2.37 6.87 -2.39 -0.02 2.36 16 9 C 0.51 15.02 4.29 87.66 0.38 15.39 16 10 O -0.57 -20.33 13.90 -3.04 -0.04 -20.37 16 11 N -0.58 -18.37 1.66 -818.08 -1.36 -19.73 16 12 C 0.11 3.80 5.89 86.50 0.51 4.31 16 13 C 0.15 5.55 3.61 45.11 0.16 5.71 16 14 H 0.07 2.65 8.03 -2.39 -0.02 2.63 16 15 C -0.12 -3.85 5.58 30.72 0.17 -3.68 16 16 C -0.14 -3.97 4.08 30.60 0.12 -3.85 16 17 C -0.13 -3.73 5.42 30.72 0.17 -3.56 16 18 C 0.17 6.40 2.64 44.97 0.12 6.52 16 19 H 0.09 3.86 5.91 -2.39 -0.01 3.85 16 20 C 0.11 3.50 5.56 86.35 0.48 3.98 16 21 N -0.59 -25.27 2.54 -646.47 -1.64 -26.91 16 22 C -0.26 -12.69 9.73 84.03 0.82 -11.87 16 23 H 0.06 2.78 7.90 -2.91 -0.02 2.76 16 24 C -0.03 -1.55 4.97 84.86 0.42 -1.13 16 25 N -0.91 -45.63 10.73 21.65 0.23 -45.40 16 26 Si 0.95 41.16 29.59 68.60 2.03 43.19 16 27 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 28 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 29 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 30 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.06 1.75 7.93 -2.39 -0.02 1.73 16 32 H 0.07 2.10 5.93 -2.39 -0.01 2.08 16 33 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.13 1.57 6.11 -2.39 -0.01 1.56 16 36 H 0.09 1.68 6.01 -2.39 -0.01 1.67 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.81 6.99 -2.38 -0.02 2.80 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.36 8.11 -2.39 -0.02 1.34 16 42 H 0.09 2.51 1.32 -3.37 0.00 2.51 16 43 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.08 1.88 6.48 -2.38 -0.02 1.86 16 45 H 0.10 2.41 4.84 -2.39 -0.01 2.40 16 46 H 0.06 2.28 7.74 -2.39 -0.02 2.26 16 47 H 0.25 12.38 8.31 -92.71 -0.77 11.61 16 Total: -1.00 -63.26 340.78 3.57 -59.70 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.99 Total: 19.08 kcal Atomic # 6 Polarization: 22.40 SS G_CDS: 5.88 Total: 28.28 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -5.24 Total: -110.02 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.10 Total: -40.23 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -63.26 3.57 -59.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039863726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.541 kcal (2) G-P(sol) polarization free energy of solvation -63.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds