Wall clock time and date at job start Fri Apr 10 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46758 * 124.35505 * 2 1 4 4 C 1.54480 * 105.47461 * 162.96452 * 3 2 1 5 5 H 1.09006 * 110.96487 * 267.25187 * 4 3 2 6 6 C 1.50703 * 110.96638 * 143.53612 * 4 3 2 7 7 O 1.21274 * 120.00410 * 359.97438 * 6 4 3 8 8 N 1.34779 * 119.99648 * 179.97438 * 6 4 3 9 9 C 1.48232 * 127.00651 * 0.02562 * 8 6 4 10 10 C 1.55225 * 103.42361 * 141.42897 * 9 8 6 11 11 C 1.53384 * 102.50538 * 36.34292 * 10 9 8 12 12 C 1.53903 * 111.11966 * 100.34776 * 11 10 9 13 13 C 1.55137 * 101.45115 * 86.30709 * 12 11 10 14 14 N 1.47534 * 104.97572 * 35.75142 * 13 12 11 15 15 C 1.36943 * 125.67212 * 156.35803 * 14 13 12 16 16 H 1.07994 * 119.99819 * 153.83047 * 15 14 13 17 17 C 1.38812 * 119.99537 * 333.82946 * 15 14 13 18 18 N 1.31623 * 119.99611 * 153.61329 * 17 15 14 19 19 Si 1.86793 * 120.00563 * 333.61659 * 17 15 14 20 20 H 1.48507 * 109.47241 * 95.10419 * 19 17 15 21 21 H 1.48500 * 109.47283 * 215.10559 * 19 17 15 22 22 H 1.48500 * 109.47112 * 335.10879 * 19 17 15 23 23 C 1.47339 * 108.65751 * 336.09546 * 14 13 12 24 24 C 1.47836 * 127.00523 * 179.97438 * 8 6 4 25 25 C 1.54617 * 101.76861 * 25.41320 * 4 3 2 26 26 C 1.34426 * 124.34358 * 179.97438 * 2 1 3 27 27 O 1.21273 * 124.94744 * 0.42634 * 26 2 1 28 28 H 1.09004 * 109.47375 * 90.00183 * 1 2 3 29 29 H 1.08997 * 109.47699 * 210.00381 * 1 2 3 30 30 H 1.09005 * 109.47096 * 330.00214 * 1 2 3 31 31 H 1.08995 * 110.24760 * 43.95926 * 3 2 1 32 32 H 1.09006 * 110.24107 * 281.96196 * 3 2 1 33 33 H 1.09000 * 110.63406 * 259.91371 * 9 8 6 34 34 H 1.09001 * 110.63434 * 22.78744 * 9 8 6 35 35 H 1.09002 * 110.80295 * 278.08809 * 10 9 8 36 36 H 1.09008 * 110.79917 * 154.59152 * 10 9 8 37 37 H 1.09000 * 111.03037 * 204.35365 * 12 11 10 38 38 H 1.09004 * 111.02899 * 328.23044 * 12 11 10 39 39 H 1.08998 * 110.34275 * 276.87502 * 13 12 11 40 40 H 1.09007 * 110.33703 * 154.62746 * 13 12 11 41 41 H 0.97005 * 120.00084 * 179.97438 * 18 17 15 42 42 H 1.09008 * 109.97041 * 121.30003 * 23 14 13 43 43 H 1.09002 * 109.97012 * 242.52363 * 23 14 13 44 44 H 1.09001 * 110.03376 * 85.91522 * 24 8 6 45 45 H 1.08994 * 110.03951 * 324.47667 * 24 8 6 46 46 H 1.09004 * 110.48852 * 93.87981 * 25 4 3 47 47 H 1.09002 * 110.49129 * 216.52744 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7009 0.7485 0.4362 5 1 3.8267 0.8456 1.5146 6 6 4.7718 1.5120 -0.2997 7 8 4.4637 2.3599 -1.1102 8 7 6.0719 1.2525 -0.0570 9 6 6.6204 0.2563 0.8937 10 6 7.8475 -0.3233 0.1402 11 6 8.3948 0.9050 -0.5975 12 6 9.6033 1.5041 0.1436 13 6 10.7692 0.6608 -0.4363 14 7 10.4039 0.4237 -1.8459 15 6 11.2786 0.1401 -2.8607 16 1 10.9427 -0.4160 -3.7234 17 6 12.5968 0.5674 -2.7804 18 7 13.5415 -0.0889 -3.4201 19 14 13.0302 2.0739 -1.7645 20 1 13.4595 1.6492 -0.4077 21 1 14.1354 2.8146 -2.4242 22 1 11.8403 2.9553 -1.6539 23 6 8.9409 0.5366 -1.9791 24 6 7.2414 1.9026 -0.6855 25 6 3.6898 -0.7380 0.0110 26 6 2.2233 -1.1099 0.0005 27 8 1.7945 -2.2443 -0.0064 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.8983 1.9384 0.7098 32 1 2.3310 1.6425 -1.0005 33 1 6.9317 0.7398 1.8197 34 1 5.8877 -0.5246 1.0972 35 1 7.5392 -1.0938 -0.5666 36 1 8.5844 -0.7132 0.8425 37 1 9.7263 2.5598 -0.0980 38 1 9.5130 1.3593 1.2202 39 1 10.8542 -0.2858 0.0974 40 1 11.7052 1.2162 -0.3757 41 1 14.4627 0.2099 -3.3643 42 1 8.6916 1.3169 -2.6982 43 1 8.5221 -0.4160 -2.3037 44 1 7.4956 2.8154 -0.1466 45 1 7.0252 2.1324 -1.7288 46 1 4.1197 -0.8535 -0.9840 47 1 4.2323 -1.3460 0.7349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041339938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:44 Heat of formation + Delta-G solvation = -20.712222 kcal Electronic energy + Delta-G solvation = -27952.286951 eV Core-core repulsion = 24136.305782 eV Total energy + Delta-G solvation = -3815.981170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24964 -40.13147 -38.70522 -36.57499 -36.01658 -33.51070 -32.62756 -30.91767 -29.52892 -29.00651 -28.15439 -27.43218 -25.95321 -24.14111 -22.98742 -22.55899 -20.78680 -20.06576 -19.41300 -18.97666 -17.76558 -17.08686 -16.78203 -16.54614 -16.05650 -15.92495 -15.39038 -15.07938 -14.76509 -14.20638 -14.04826 -13.88750 -13.60600 -13.51872 -13.43179 -13.08366 -12.97372 -12.80885 -12.66424 -12.42165 -12.25734 -12.07945 -11.86212 -11.78227 -11.64951 -11.43266 -11.14210 -10.97160 -10.49784 -10.41328 -10.37144 -10.27830 -9.97289 -9.85693 -9.45021 -9.11618 -8.86728 -8.53695 -6.99566 -6.01931 -3.30983 2.20132 2.31893 2.48225 2.77464 3.28891 3.45195 3.49245 3.77000 3.89567 4.17501 4.44675 4.47323 4.51733 4.53966 4.72524 4.74539 4.84489 4.93168 4.95306 5.01377 5.10118 5.14368 5.24601 5.26008 5.32224 5.36946 5.43858 5.48086 5.52558 5.71177 5.77132 5.78956 5.90932 5.97886 6.05732 6.09441 6.21521 6.27825 6.42935 6.58186 6.66074 6.66256 6.76237 7.31885 7.75838 7.77531 7.87696 8.28610 8.82086 9.65215 10.18679 11.14521 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.002758 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.118366 B =10150.140503 C =10430.996661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.625 5.625 3 C 0.117 3.883 4 C -0.120 4.120 5 H 0.117 0.883 6 C 0.543 3.457 7 O -0.536 6.536 8 N -0.615 5.615 9 C 0.093 3.907 10 C -0.115 4.115 11 C -0.085 4.085 12 C -0.123 4.123 13 C 0.122 3.878 14 N -0.608 5.608 15 C -0.246 4.246 16 H 0.087 0.913 17 C 0.028 3.972 18 N -0.899 5.899 19 Si 0.878 3.122 20 H -0.287 1.287 21 H -0.302 1.302 22 H -0.272 1.272 23 C 0.148 3.852 24 C 0.123 3.877 25 C -0.145 4.145 26 C 0.520 3.480 27 O -0.529 6.529 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.033 0.967 40 H 0.042 0.958 41 H 0.264 0.736 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.112 0.888 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.161 2.975 13.444 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.360 5.360 3 C -0.006 4.006 4 C -0.142 4.142 5 H 0.135 0.865 6 C 0.330 3.670 7 O -0.413 6.413 8 N -0.348 5.348 9 C -0.029 4.029 10 C -0.154 4.154 11 C -0.086 4.086 12 C -0.161 4.161 13 C -0.002 4.002 14 N -0.335 5.335 15 C -0.373 4.373 16 H 0.104 0.896 17 C -0.171 4.171 18 N -0.541 5.541 19 Si 0.709 3.291 20 H -0.215 1.215 21 H -0.231 1.231 22 H -0.198 1.198 23 C 0.023 3.977 24 C 0.001 3.999 25 C -0.185 4.185 26 C 0.307 3.693 27 O -0.405 6.405 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.130 0.870 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.529 2.822 12.836 26.082 hybrid contribution 0.545 1.017 0.587 1.294 sum -21.984 3.838 13.423 26.043 Atomic orbital electron populations 1.21562 0.77637 1.03170 1.02176 1.48200 1.06756 1.07297 1.73698 1.22014 0.87719 0.86799 1.04068 1.22188 0.94302 0.95400 1.02282 0.86490 1.19602 0.81684 0.83119 0.82550 1.90734 1.81245 1.34031 1.35316 1.48891 1.04699 1.39502 1.41746 1.22828 0.96276 0.91209 0.92637 1.22655 0.96163 0.97022 0.99512 1.21586 0.94125 0.94819 0.98098 1.22773 0.94794 0.99943 0.98600 1.21890 0.95458 0.96444 0.86456 1.44775 1.01320 1.84142 1.03267 1.18548 0.89793 1.29132 0.99877 0.89583 1.25151 0.95630 0.98340 0.98027 1.69905 1.00249 1.38130 1.45820 0.86897 0.77297 0.86045 0.78866 1.21511 1.23054 1.19769 1.21362 0.85842 0.98359 0.92148 1.22039 0.83217 0.95185 0.99490 1.22400 0.95505 0.94801 1.05784 1.20753 0.88909 0.84380 0.75217 1.90744 1.78471 1.21012 1.50274 0.92374 0.90568 0.90852 0.89631 0.88782 0.90598 0.90065 0.90148 0.89418 0.91211 0.91094 0.94922 0.94013 0.92665 0.94840 0.94741 0.91114 0.89904 0.86967 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 10.96 59.84 0.66 1.27 16 2 N -0.62 -5.32 3.33 -180.29 -0.60 -5.92 16 3 C 0.12 0.87 6.71 -3.12 -0.02 0.85 16 4 C -0.12 -0.89 2.84 -90.14 -0.26 -1.14 16 5 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 6 C 0.54 5.88 7.14 -10.98 -0.08 5.81 16 7 O -0.54 -7.76 15.85 5.56 0.09 -7.67 16 8 N -0.62 -6.52 3.31 -169.97 -0.56 -7.08 16 9 C 0.09 0.76 6.87 -1.91 -0.01 0.74 16 10 C -0.12 -1.26 6.06 -25.35 -0.15 -1.42 16 11 C -0.08 -1.19 0.74 -153.94 -0.11 -1.30 16 12 C -0.12 -1.86 5.73 -25.13 -0.14 -2.00 16 13 C 0.12 2.47 6.23 -2.35 -0.01 2.46 16 14 N -0.61 -14.14 3.09 -170.36 -0.53 -14.66 16 15 C -0.25 -6.88 10.48 -15.06 -0.16 -7.04 16 16 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 17 C 0.03 0.82 5.39 -17.43 -0.09 0.72 16 18 N -0.90 -27.38 13.97 55.49 0.78 -26.61 16 19 Si 0.88 22.05 24.93 -169.99 -4.24 17.81 16 20 H -0.29 -6.97 6.76 56.52 0.38 -6.59 16 21 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 23 C 0.15 2.77 6.45 -3.56 -0.02 2.75 16 24 C 0.12 1.57 6.31 -3.44 -0.02 1.55 16 25 C -0.14 -1.16 5.53 -26.74 -0.15 -1.31 16 26 C 0.52 5.53 8.02 -10.85 -0.09 5.45 16 27 O -0.53 -7.66 17.59 5.56 0.10 -7.57 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.53 7.93 -51.93 -0.41 0.12 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.85 6.96 -51.93 -0.36 0.49 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.48 5.37 -51.93 -0.28 0.21 16 35 H 0.08 0.92 7.49 -51.93 -0.39 0.53 16 36 H 0.09 0.92 7.78 -51.92 -0.40 0.52 16 37 H 0.07 1.10 7.92 -51.93 -0.41 0.69 16 38 H 0.07 0.85 7.94 -51.93 -0.41 0.44 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.94 2.87 -51.93 -0.15 0.79 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.03 0.65 7.46 -51.92 -0.39 0.27 16 43 H 0.03 0.65 7.43 -51.93 -0.39 0.26 16 44 H 0.07 0.87 7.61 -51.93 -0.40 0.47 16 45 H 0.08 1.20 7.29 -51.93 -0.38 0.82 16 46 H 0.11 0.99 7.89 -51.93 -0.41 0.58 16 47 H 0.11 0.71 6.78 -51.93 -0.35 0.36 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -35.33 362.45 -7.41 -42.74 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -7.24 Total: -3.88 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.67 Total: 7.38 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.91 Total: -54.27 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.19 Total: -15.24 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.24 Total: 17.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.33 -7.41 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041339938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.031 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds