Wall clock time and date at job start Fri Apr 10 2020 18:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46758 * 124.35505 * 2 1 4 4 C 1.54480 * 105.47461 * 162.96452 * 3 2 1 5 5 H 1.09006 * 110.96487 * 267.25187 * 4 3 2 6 6 C 1.50703 * 110.96638 * 143.53612 * 4 3 2 7 7 O 1.21274 * 120.00410 * 359.97438 * 6 4 3 8 8 N 1.34779 * 119.99648 * 179.97438 * 6 4 3 9 9 C 1.48232 * 127.00651 * 0.02562 * 8 6 4 10 10 C 1.55225 * 103.42361 * 141.42897 * 9 8 6 11 11 C 1.53384 * 102.50538 * 36.34292 * 10 9 8 12 12 C 1.53903 * 111.11966 * 100.34776 * 11 10 9 13 13 C 1.55137 * 101.45115 * 86.30709 * 12 11 10 14 14 N 1.47534 * 104.97572 * 35.75142 * 13 12 11 15 15 C 1.36943 * 125.67212 * 156.35803 * 14 13 12 16 16 H 1.07994 * 119.99819 * 153.83047 * 15 14 13 17 17 C 1.38812 * 119.99537 * 333.82946 * 15 14 13 18 18 N 1.31623 * 119.99611 * 153.61329 * 17 15 14 19 19 Si 1.86793 * 120.00563 * 333.61659 * 17 15 14 20 20 H 1.48507 * 109.47241 * 95.10419 * 19 17 15 21 21 H 1.48500 * 109.47283 * 215.10559 * 19 17 15 22 22 H 1.48500 * 109.47112 * 335.10879 * 19 17 15 23 23 C 1.47339 * 108.65751 * 336.09546 * 14 13 12 24 24 C 1.47836 * 127.00523 * 179.97438 * 8 6 4 25 25 C 1.54617 * 101.76861 * 25.41320 * 4 3 2 26 26 C 1.34426 * 124.34358 * 179.97438 * 2 1 3 27 27 O 1.21273 * 124.94744 * 0.42634 * 26 2 1 28 28 H 1.09004 * 109.47375 * 90.00183 * 1 2 3 29 29 H 1.08997 * 109.47699 * 210.00381 * 1 2 3 30 30 H 1.09005 * 109.47096 * 330.00214 * 1 2 3 31 31 H 1.08995 * 110.24760 * 43.95926 * 3 2 1 32 32 H 1.09006 * 110.24107 * 281.96196 * 3 2 1 33 33 H 1.09000 * 110.63406 * 259.91371 * 9 8 6 34 34 H 1.09001 * 110.63434 * 22.78744 * 9 8 6 35 35 H 1.09002 * 110.80295 * 278.08809 * 10 9 8 36 36 H 1.09008 * 110.79917 * 154.59152 * 10 9 8 37 37 H 1.09000 * 111.03037 * 204.35365 * 12 11 10 38 38 H 1.09004 * 111.02899 * 328.23044 * 12 11 10 39 39 H 1.08998 * 110.34275 * 276.87502 * 13 12 11 40 40 H 1.09007 * 110.33703 * 154.62746 * 13 12 11 41 41 H 0.97005 * 120.00084 * 179.97438 * 18 17 15 42 42 H 1.09008 * 109.97041 * 121.30003 * 23 14 13 43 43 H 1.09002 * 109.97012 * 242.52363 * 23 14 13 44 44 H 1.09001 * 110.03376 * 85.91522 * 24 8 6 45 45 H 1.08994 * 110.03951 * 324.47667 * 24 8 6 46 46 H 1.09004 * 110.48852 * 93.87981 * 25 4 3 47 47 H 1.09002 * 110.49129 * 216.52744 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2116 0.0000 4 6 3.7009 0.7485 0.4362 5 1 3.8267 0.8456 1.5146 6 6 4.7718 1.5120 -0.2997 7 8 4.4637 2.3599 -1.1102 8 7 6.0719 1.2525 -0.0570 9 6 6.6204 0.2563 0.8937 10 6 7.8475 -0.3233 0.1402 11 6 8.3948 0.9050 -0.5975 12 6 9.6033 1.5041 0.1436 13 6 10.7692 0.6608 -0.4363 14 7 10.4039 0.4237 -1.8459 15 6 11.2786 0.1401 -2.8607 16 1 10.9427 -0.4160 -3.7234 17 6 12.5968 0.5674 -2.7804 18 7 13.5415 -0.0889 -3.4201 19 14 13.0302 2.0739 -1.7645 20 1 13.4595 1.6492 -0.4077 21 1 14.1354 2.8146 -2.4242 22 1 11.8403 2.9553 -1.6539 23 6 8.9409 0.5366 -1.9791 24 6 7.2414 1.9026 -0.6855 25 6 3.6898 -0.7380 0.0110 26 6 2.2233 -1.1099 0.0005 27 8 1.7945 -2.2443 -0.0064 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.8983 1.9384 0.7098 32 1 2.3310 1.6425 -1.0005 33 1 6.9317 0.7398 1.8197 34 1 5.8877 -0.5246 1.0972 35 1 7.5392 -1.0938 -0.5666 36 1 8.5844 -0.7132 0.8425 37 1 9.7263 2.5598 -0.0980 38 1 9.5130 1.3593 1.2202 39 1 10.8542 -0.2858 0.0974 40 1 11.7052 1.2162 -0.3757 41 1 14.4627 0.2099 -3.3643 42 1 8.6916 1.3169 -2.6982 43 1 8.5221 -0.4160 -2.3037 44 1 7.4956 2.8154 -0.1466 45 1 7.0252 2.1324 -1.7288 46 1 4.1197 -0.8535 -0.9840 47 1 4.2323 -1.3460 0.7349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041339938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:43 Heat of formation + Delta-G solvation = -46.317278 kcal Electronic energy + Delta-G solvation = -27953.397270 eV Core-core repulsion = 24136.305782 eV Total energy + Delta-G solvation = -3817.091488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03077 -41.09971 -39.76241 -37.49865 -37.19716 -34.68979 -33.96543 -32.41629 -30.58386 -30.32305 -28.87044 -28.24413 -27.23015 -25.41744 -24.06521 -23.36040 -22.49569 -20.78474 -20.31512 -20.03376 -18.91173 -18.39254 -17.73533 -17.64322 -17.29599 -16.74542 -16.52112 -15.89522 -15.85557 -15.41967 -15.21722 -15.01107 -14.78054 -14.70899 -14.53712 -14.23412 -13.90510 -13.72445 -13.61719 -13.47504 -13.28820 -13.20669 -13.10010 -12.86676 -12.60976 -12.53791 -12.45080 -12.33928 -12.06223 -11.76619 -11.62739 -11.46205 -11.28711 -11.14957 -10.80208 -10.63728 -9.79969 -9.72393 -8.94937 -8.23315 -5.48371 1.27403 1.39611 1.42343 1.50638 1.51861 1.75846 2.08304 2.40209 2.97616 3.08500 3.28322 3.33156 3.47419 3.59399 3.67539 3.75364 3.85863 4.04623 4.12848 4.23305 4.35695 4.40962 4.42286 4.47401 4.53804 4.61930 4.66925 4.70032 4.74151 4.76951 4.81923 4.83764 4.85335 4.91099 4.96427 5.04532 5.07955 5.20243 5.25110 5.35338 5.44479 5.45704 5.74197 5.98373 6.09210 6.52678 6.78940 7.02029 7.06842 7.52903 8.14151 8.97669 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.002758 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.118366 B =10150.140503 C =10430.996661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.621 5.621 3 C 0.116 3.884 4 C -0.105 4.105 5 H 0.156 0.844 6 C 0.542 3.458 7 O -0.579 6.579 8 N -0.614 5.614 9 C 0.100 3.900 10 C -0.116 4.116 11 C -0.073 4.073 12 C -0.109 4.109 13 C 0.111 3.889 14 N -0.627 5.627 15 C -0.243 4.243 16 H 0.045 0.955 17 C -0.031 4.031 18 N -0.949 5.949 19 Si 0.949 3.051 20 H -0.270 1.270 21 H -0.311 1.311 22 H -0.262 1.262 23 C 0.143 3.857 24 C 0.127 3.873 25 C -0.139 4.139 26 C 0.511 3.489 27 O -0.577 6.577 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.117 0.883 39 H 0.042 0.958 40 H 0.023 0.977 41 H 0.264 0.736 42 H 0.017 0.983 43 H 0.028 0.972 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.101 0.899 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.833 4.344 17.614 29.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.354 5.354 3 C -0.006 4.006 4 C -0.126 4.126 5 H 0.174 0.826 6 C 0.331 3.669 7 O -0.459 6.459 8 N -0.347 5.347 9 C -0.021 4.021 10 C -0.154 4.154 11 C -0.074 4.074 12 C -0.147 4.147 13 C -0.013 4.013 14 N -0.354 5.354 15 C -0.372 4.372 16 H 0.063 0.937 17 C -0.227 4.227 18 N -0.594 5.594 19 Si 0.779 3.221 20 H -0.197 1.197 21 H -0.240 1.240 22 H -0.187 1.187 23 C 0.019 3.981 24 C 0.004 3.996 25 C -0.179 4.179 26 C 0.299 3.701 27 O -0.457 6.457 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.132 0.868 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.136 0.864 39 H 0.060 0.940 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.035 0.965 43 H 0.046 0.954 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.240 4.215 17.052 29.935 hybrid contribution 0.993 0.518 -0.844 1.402 sum -23.247 4.733 16.208 28.732 Atomic orbital electron populations 1.21739 0.76640 1.04262 1.02534 1.48370 1.07640 1.07176 1.72253 1.22089 0.87944 0.86671 1.03917 1.22186 0.92697 0.93891 1.03816 0.82632 1.20154 0.82111 0.82673 0.81949 1.90726 1.81890 1.36122 1.37168 1.48940 1.04167 1.39672 1.41889 1.23019 0.95412 0.91362 0.92297 1.22671 0.97774 0.95395 0.99557 1.21438 0.94286 0.96767 0.94941 1.22762 0.92234 0.98630 1.01046 1.22112 0.96773 0.97615 0.84806 1.44897 1.02582 1.84025 1.03900 1.18449 0.90765 1.27960 1.00046 0.93681 1.25804 0.95525 1.00951 1.00402 1.70031 1.00639 1.39896 1.48878 0.85747 0.76853 0.81723 0.77808 1.19678 1.23985 1.18651 1.21498 0.83617 0.97570 0.95448 1.21810 0.83743 0.95426 0.98606 1.22392 0.93937 0.95614 1.05975 1.21191 0.90172 0.84084 0.74604 1.90717 1.79429 1.22841 1.52705 0.92443 0.91351 0.87884 0.86764 0.90736 0.87596 0.87245 0.91186 0.88140 0.91574 0.86428 0.94019 0.95963 0.92737 0.96460 0.95435 0.89810 0.92543 0.88109 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 10.96 127.77 1.40 2.39 16 2 N -0.62 -9.27 3.33 -842.90 -2.81 -12.08 16 3 C 0.12 1.39 6.71 86.83 0.58 1.97 16 4 C -0.10 -1.13 2.84 -10.49 -0.03 -1.16 16 5 H 0.16 0.59 8.14 -2.38 -0.02 0.57 16 6 C 0.54 10.18 7.14 87.66 0.63 10.80 16 7 O -0.58 -16.03 15.85 -3.01 -0.05 -16.07 16 8 N -0.61 -10.80 3.31 -810.04 -2.68 -13.48 16 9 C 0.10 1.08 6.87 86.81 0.60 1.67 16 10 C -0.12 -2.10 6.06 31.49 0.19 -1.91 16 11 C -0.07 -1.86 0.74 -51.81 -0.04 -1.90 16 12 C -0.11 -2.87 5.73 31.63 0.18 -2.69 16 13 C 0.11 4.26 6.23 86.91 0.54 4.80 16 14 N -0.63 -29.38 3.09 -692.90 -2.14 -31.52 16 15 C -0.24 -14.14 10.48 84.03 0.88 -13.26 16 16 H 0.05 2.90 8.06 -2.91 -0.02 2.87 16 17 C -0.03 -1.84 5.39 84.86 0.46 -1.38 16 18 N -0.95 -60.06 13.97 21.65 0.30 -59.76 16 19 Si 0.95 46.32 24.93 68.60 1.71 48.03 16 20 H -0.27 -12.29 6.76 99.48 0.67 -11.62 16 21 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 22 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.14 5.40 6.45 86.24 0.56 5.96 16 24 C 0.13 2.95 6.31 86.04 0.54 3.49 16 25 C -0.14 -1.83 5.53 30.59 0.17 -1.66 16 26 C 0.51 10.06 8.02 87.90 0.71 10.77 16 27 O -0.58 -16.48 17.59 -3.01 -0.05 -16.53 16 28 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.07 0.89 7.93 -2.39 -0.02 0.87 16 30 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 1.24 6.96 -2.38 -0.02 1.22 16 33 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.11 0.62 5.37 -2.39 -0.01 0.61 16 35 H 0.07 1.44 7.49 -2.39 -0.02 1.42 16 36 H 0.10 1.62 7.78 -2.38 -0.02 1.61 16 37 H 0.07 1.83 7.92 -2.39 -0.02 1.81 16 38 H 0.12 2.08 7.94 -2.39 -0.02 2.06 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.02 0.96 2.87 -2.38 -0.01 0.95 16 41 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 42 H 0.02 0.70 7.46 -2.38 -0.02 0.68 16 43 H 0.03 1.06 7.43 -2.39 -0.02 1.05 16 44 H 0.08 1.76 7.61 -2.39 -0.02 1.74 16 45 H 0.06 1.62 7.29 -2.39 -0.02 1.60 16 46 H 0.10 1.61 7.89 -2.39 -0.02 1.59 16 47 H 0.14 1.13 6.78 -2.39 -0.02 1.11 16 Total: -1.00 -83.17 362.45 2.59 -80.58 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: 0.94 Total: 2.95 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 7.36 Total: 17.89 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -7.33 Total: -116.84 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.10 Total: -32.61 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.71 Total: 48.03 kcal Total: -83.17 2.59 -80.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041339938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.263 kcal (2) G-P(sol) polarization free energy of solvation -83.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds