Wall clock time and date at job start Fri Apr 10 2020 18:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 O 1.21283 * 120.00262 * 240.00295 * 4 2 1 6 6 N 1.34777 * 119.99928 * 59.72201 * 4 2 1 7 7 C 1.46499 * 120.00199 * 180.27479 * 6 4 2 8 8 H 1.09005 * 115.51561 * 9.58575 * 7 6 4 9 9 C 1.52996 * 117.44813 * 224.23134 * 7 6 4 10 10 H 1.08999 * 119.52645 * 4.09169 * 9 7 6 11 11 C 1.54379 * 118.13007 * 160.68430 * 9 7 6 12 12 N 1.48563 * 104.59266 * 87.23125 * 11 9 7 13 13 C 1.46904 * 110.99755 * 200.96142 * 12 11 9 14 14 C 1.50702 * 109.47055 * 170.00372 * 13 12 11 15 15 O 1.21290 * 119.99762 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99872 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99853 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00099 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00104 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99994 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47142 * 60.00239 * 21 19 17 23 23 H 1.48503 * 109.46965 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47287 * 300.00016 * 21 19 17 25 25 C 1.48559 * 104.22144 * 320.51593 * 12 11 9 26 26 C 1.53001 * 117.44740 * 155.00159 * 7 6 4 27 27 H 1.09003 * 119.51917 * 355.91380 * 26 7 6 28 28 C 1.52996 * 109.47166 * 119.99964 * 2 1 3 29 29 C 1.53002 * 117.50108 * 248.62088 * 28 2 1 30 30 C 1.53003 * 60.00175 * 252.50924 * 29 28 2 31 31 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 33 33 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 34 34 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 35 35 H 1.09003 * 110.41171 * 206.00925 * 11 9 7 36 36 H 1.09000 * 110.41104 * 328.45284 * 11 9 7 37 37 H 1.09004 * 109.46601 * 289.99913 * 13 12 11 38 38 H 1.08992 * 109.47512 * 49.99832 * 13 12 11 39 39 H 0.96993 * 120.00457 * 359.97438 * 16 14 13 40 40 H 0.96995 * 120.00437 * 180.02562 * 20 19 17 41 41 H 1.09003 * 110.41195 * 280.70359 * 25 12 11 42 42 H 1.09008 * 110.40788 * 158.26378 * 25 12 11 43 43 H 1.09000 * 115.55072 * 34.33153 * 28 2 1 44 44 H 1.08992 * 117.49312 * 359.97438 * 29 28 2 45 45 H 1.08998 * 117.49793 * 145.02044 * 29 28 2 46 46 H 1.08993 * 117.50004 * 252.51206 * 30 29 28 47 47 H 1.08999 * 117.49653 * 107.48765 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7022 -0.2532 -2.4546 7 6 2.1855 -0.9472 -3.6507 8 1 2.6659 -1.9095 -3.4734 9 6 2.7311 -0.0876 -4.7927 10 1 2.8082 0.9919 -4.6630 11 6 3.6427 -0.7623 -5.8402 12 7 2.7055 -1.3100 -6.8546 13 6 3.3407 -2.3809 -7.6342 14 6 2.3005 -3.0745 -8.4755 15 8 1.1437 -2.7127 -8.4298 16 7 2.6554 -4.0975 -9.2779 17 6 1.7089 -4.7289 -10.0429 18 1 0.6789 -4.4067 -10.0022 19 6 2.0749 -5.7833 -10.8706 20 7 3.3283 -6.1750 -10.9205 21 14 0.7851 -6.6440 -11.9124 22 1 0.1597 -5.6635 -12.8357 23 1 1.4272 -7.7268 -12.7002 24 1 -0.2568 -7.2263 -11.0289 25 6 1.5690 -1.8357 -6.0553 26 6 1.3670 -0.7937 -4.9343 27 1 0.4285 -0.2398 -4.9098 28 6 2.0400 -0.7212 1.2492 29 6 2.7419 0.1226 2.3151 30 6 3.5551 -0.8281 1.4343 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.1446 0.5355 -2.5436 35 1 4.3079 -0.0280 -6.2945 36 1 4.2186 -1.5661 -5.3816 37 1 4.1061 -1.9535 -8.2821 38 1 3.7990 -3.1009 -6.9564 39 1 3.5803 -4.3872 -9.3142 40 1 3.5839 -6.9108 -11.4986 41 1 1.8205 -2.8075 -5.6303 42 1 0.6729 -1.9097 -6.6716 43 1 1.4311 -1.5585 1.5902 44 1 2.8407 1.1915 2.1261 45 1 2.5947 -0.1593 3.3577 46 1 3.9427 -1.7355 1.8973 47 1 4.1884 -0.3845 0.6660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114103421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:35 Heat of formation + Delta-G solvation = -29.679482 kcal Electronic energy + Delta-G solvation = -26497.532631 eV Core-core repulsion = 22681.162612 eV Total energy + Delta-G solvation = -3816.370019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61779 -40.76793 -39.71582 -37.97812 -36.37905 -35.76425 -34.19570 -33.31313 -32.55727 -29.40009 -29.07037 -26.65319 -25.73796 -23.99039 -23.18935 -22.45383 -22.00510 -21.39574 -20.94255 -20.67419 -19.85604 -18.16361 -17.91000 -17.62832 -16.70432 -16.63330 -16.35480 -16.24762 -15.87397 -15.65199 -15.34954 -15.16990 -14.96377 -14.77689 -14.16172 -13.89190 -13.55582 -13.47675 -13.36193 -13.21581 -13.16506 -12.93699 -12.74096 -12.52747 -12.45312 -12.41245 -12.35782 -12.12638 -12.00190 -11.90622 -11.48974 -11.37088 -11.10107 -10.97428 -10.63452 -10.24152 -10.03661 -9.78900 -9.42637 -8.48082 -5.97067 1.38550 1.40510 1.51673 1.53424 1.87066 2.01107 2.27262 2.63366 2.82347 2.97916 3.18423 3.31710 3.57713 3.60311 3.67857 3.76997 3.83395 3.92486 4.09404 4.17847 4.20801 4.24973 4.30882 4.36924 4.40997 4.49524 4.53447 4.56048 4.63389 4.78420 4.82791 4.89400 4.96010 5.01780 5.07981 5.10930 5.21361 5.22110 5.27427 5.36288 5.39413 5.45055 5.77951 5.85026 6.05021 6.50563 6.57934 7.10363 7.22776 7.52644 8.08003 8.69113 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.024725 B = 0.002047 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.177293 B =13672.434771 C =13798.194819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.070 4.070 3 H 0.123 0.877 4 C 0.515 3.485 5 O -0.574 6.574 6 N -0.686 5.686 7 C 0.111 3.889 8 H 0.105 0.895 9 C -0.153 4.153 10 H 0.146 0.854 11 C 0.057 3.943 12 N -0.500 5.500 13 C 0.044 3.956 14 C 0.439 3.561 15 O -0.613 6.613 16 N -0.572 5.572 17 C -0.333 4.333 18 H 0.081 0.919 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.995 3.005 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.272 1.272 25 C 0.066 3.934 26 C -0.165 4.165 27 H 0.135 0.865 28 C -0.148 4.148 29 C -0.157 4.157 30 C -0.179 4.179 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.418 0.582 35 H 0.108 0.892 36 H 0.046 0.954 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.021 0.979 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 16.604 23.605 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 H 0.141 0.859 4 C 0.303 3.697 5 O -0.452 6.452 6 N -0.337 5.337 7 C 0.003 3.997 8 H 0.123 0.877 9 C -0.173 4.173 10 H 0.163 0.837 11 C -0.071 4.071 12 N -0.225 5.225 13 C -0.087 4.087 14 C 0.226 3.774 15 O -0.500 6.500 16 N -0.209 5.209 17 C -0.463 4.463 18 H 0.099 0.901 19 C -0.214 4.214 20 N -0.561 5.561 21 Si 0.818 3.182 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.061 4.061 26 C -0.185 4.185 27 H 0.153 0.847 28 C -0.167 4.167 29 C -0.193 4.193 30 C -0.216 4.216 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.256 0.744 35 H 0.126 0.874 36 H 0.065 0.935 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.103 0.897 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.797 16.384 23.212 28.423 hybrid contribution 0.137 -1.488 -0.502 1.577 sum -0.660 14.896 22.710 27.168 Atomic orbital electron populations 1.21779 0.90815 1.02647 1.04453 1.20934 0.98673 1.00349 0.89130 0.85942 1.21377 0.79000 0.84157 0.85175 1.90708 1.39303 1.28027 1.87156 1.45211 1.53071 1.31793 1.03613 1.21490 1.00271 0.97018 0.80892 0.87709 1.23984 0.95221 1.00255 0.97824 0.83669 1.22795 0.94334 0.99096 0.90827 1.65420 1.06921 1.28868 1.21290 1.21995 0.95700 0.93666 0.97361 1.20651 0.90077 0.82588 0.84057 1.90434 1.21870 1.67642 1.70024 1.41915 1.11168 1.29633 1.38159 1.19639 0.91947 1.13854 1.20845 0.90128 1.26080 0.99139 0.97414 0.98782 1.69670 1.17410 1.28999 1.40036 0.84965 0.77578 0.77748 0.77906 1.19575 1.19502 1.19734 1.22614 0.96677 0.94193 0.92664 1.23881 0.97397 1.01788 0.95415 0.84700 1.22035 0.95527 1.02255 0.96890 1.23171 1.02048 0.97850 0.96264 1.22753 0.93969 1.01922 1.02986 0.93341 0.89264 0.90475 0.74377 0.87391 0.93535 0.86739 0.91732 0.77043 0.91272 0.96085 0.89682 0.88262 0.87177 0.87624 0.89713 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.07 71.98 0.65 -0.55 16 2 C -0.07 -0.86 2.88 -11.54 -0.03 -0.89 16 3 H 0.12 0.91 7.90 -2.38 -0.02 0.90 16 4 C 0.51 10.38 7.03 87.66 0.62 10.99 16 5 O -0.57 -17.18 14.65 -3.04 -0.04 -17.22 16 6 N -0.69 -11.53 5.45 -442.53 -2.41 -13.94 16 7 C 0.11 2.52 5.97 44.99 0.27 2.79 16 8 H 0.11 3.05 7.40 -2.38 -0.02 3.03 16 9 C -0.15 -3.20 7.05 -9.90 -0.07 -3.27 16 10 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 11 C 0.06 1.41 6.30 86.45 0.54 1.95 16 12 N -0.50 -16.79 5.34 -886.03 -4.73 -21.52 16 13 C 0.04 1.60 5.55 85.56 0.47 2.08 16 14 C 0.44 21.32 7.50 87.66 0.66 21.98 16 15 O -0.61 -33.79 13.24 -3.06 -0.04 -33.83 16 16 N -0.57 -29.93 5.29 -306.98 -1.62 -31.55 16 17 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 18 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 19 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 20 N -0.92 -50.36 13.05 21.66 0.28 -50.08 16 21 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 C 0.07 2.31 5.11 86.45 0.44 2.75 16 26 C -0.16 -4.08 7.05 -9.90 -0.07 -4.15 16 27 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 28 C -0.15 -2.21 4.73 -10.79 -0.05 -2.26 16 29 C -0.16 -1.69 10.18 30.60 0.31 -1.38 16 30 C -0.18 -3.09 8.97 30.60 0.27 -2.82 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.44 7.55 -2.39 -0.02 0.42 16 34 H 0.42 4.10 8.24 -92.71 -0.76 3.33 16 35 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 1.16 7.82 -2.39 -0.02 1.14 16 37 H 0.11 3.66 8.14 -2.38 -0.02 3.64 16 38 H 0.06 2.17 7.88 -2.39 -0.02 2.15 16 39 H 0.40 19.77 7.90 -92.71 -0.73 19.04 16 40 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.02 0.78 8.00 -2.39 -0.02 0.77 16 42 H 0.08 3.61 6.05 -2.38 -0.01 3.59 16 43 H 0.10 1.61 8.11 -2.39 -0.02 1.59 16 44 H 0.11 0.83 8.05 -2.39 -0.02 0.81 16 45 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 Total: -1.00 -73.68 384.04 -1.74 -75.42 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: -0.51 Total: 38.71 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 5.30 Total: 8.59 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -8.48 Total: -117.10 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -0.09 Total: -51.05 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -73.68 -1.74 -75.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114103421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.741 kcal (2) G-P(sol) polarization free energy of solvation -73.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds