Wall clock time and date at job start Fri Apr 10 2020 18:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00046 * 2 1 4 4 C 1.53001 * 109.46966 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47259 * 240.00131 * 3 2 1 6 6 C 1.50707 * 109.46949 * 120.00155 * 3 2 1 7 7 O 1.21280 * 119.99920 * 0.02562 * 6 3 2 8 8 N 1.34772 * 119.99774 * 180.02562 * 6 3 2 9 9 C 1.46495 * 119.99836 * 180.02562 * 8 6 3 10 10 H 1.08997 * 115.49771 * 9.61367 * 9 8 6 11 11 C 1.53007 * 117.44543 * 224.22644 * 9 8 6 12 12 H 1.09001 * 119.52175 * 4.09242 * 11 9 8 13 13 C 1.54374 * 118.12951 * 160.68211 * 11 9 8 14 14 N 1.48562 * 104.59366 * 87.23112 * 13 11 9 15 15 C 1.46901 * 111.00245 * 200.95798 * 14 13 11 16 16 C 1.50702 * 109.46920 * 285.42065 * 15 14 13 17 17 O 1.21294 * 120.00254 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99754 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00054 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99767 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99801 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99513 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00212 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47199 * 90.00070 * 23 21 19 25 25 H 1.48507 * 109.46945 * 209.99982 * 23 21 19 26 26 H 1.48503 * 109.47037 * 329.99786 * 23 21 19 27 27 C 1.48556 * 104.22469 * 320.51864 * 14 13 11 28 28 C 1.53006 * 117.44571 * 155.00147 * 9 8 6 29 29 H 1.08998 * 119.52288 * 354.35165 * 28 9 8 30 30 H 1.08000 * 119.99975 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00136 * 359.97438 * 1 2 3 32 32 H 1.08005 * 119.99657 * 180.02562 * 2 1 3 33 33 H 1.09004 * 109.46862 * 179.97438 * 4 3 2 34 34 H 1.08995 * 109.47167 * 299.99523 * 4 3 2 35 35 H 1.08993 * 109.47175 * 60.00058 * 4 3 2 36 36 H 1.09004 * 109.47570 * 300.00201 * 5 3 2 37 37 H 1.09008 * 109.46867 * 60.00311 * 5 3 2 38 38 H 1.09006 * 109.47395 * 179.97438 * 5 3 2 39 39 H 0.97006 * 120.00279 * 359.97438 * 8 6 3 40 40 H 1.09003 * 110.41466 * 328.45114 * 13 11 9 41 41 H 1.09004 * 110.51377 * 206.05786 * 13 11 9 42 42 H 1.08995 * 109.46762 * 45.41886 * 15 14 13 43 43 H 1.08994 * 109.47249 * 165.41837 * 15 14 13 44 44 H 0.97004 * 120.00253 * 0.02562 * 18 16 15 45 45 H 0.96995 * 119.99394 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.40681 * 280.70319 * 27 14 13 47 47 H 1.08995 * 110.41457 * 158.26025 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9300 1.3848 1.2305 7 8 2.9354 0.4716 2.0286 8 7 3.6988 2.4710 1.4440 9 6 4.5414 2.5483 2.6399 10 1 4.6178 1.6289 3.2203 11 6 4.5545 3.8709 3.4090 12 1 3.8983 4.6821 3.0937 13 6 5.0432 3.8565 4.8733 14 7 6.5155 4.0304 4.7784 15 6 7.1817 3.5539 5.9978 16 6 6.9620 4.5461 7.1106 17 8 6.3146 5.5515 6.9077 18 7 7.4850 4.3162 8.3314 19 6 7.2847 5.2186 9.3439 20 1 6.7076 6.1134 9.1635 21 6 7.8243 4.9818 10.6023 22 7 7.6328 5.8470 11.5727 23 14 8.8232 3.4344 10.9142 24 1 10.2546 3.7024 10.6241 25 1 8.6738 3.0267 12.3344 26 1 8.3350 2.3440 10.0322 27 6 6.9051 3.2092 3.6033 28 6 5.7793 3.4451 2.5735 29 1 6.0493 3.9190 1.6298 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.6143 3.4120 0.0011 34 1 0.4423 2.4105 -0.8891 35 1 0.4430 2.4100 0.8908 36 1 3.6515 0.5576 -1.2493 37 1 2.3164 1.3285 -2.1392 38 1 3.4878 2.3304 -1.2495 39 1 3.6947 3.2013 0.8055 40 1 4.8026 2.9037 5.3451 41 1 4.5984 4.6797 5.4326 42 1 6.7662 2.5880 6.2849 43 1 8.2503 3.4486 5.8106 44 1 8.0031 3.5123 8.4936 45 1 8.0091 5.6815 12.4512 46 1 6.9559 2.1552 3.8763 47 1 7.8618 3.5461 3.2044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114673059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:51 Heat of formation + Delta-G solvation = -2.969373 kcal Electronic energy + Delta-G solvation = -26588.805175 eV Core-core repulsion = 22773.593393 eV Total energy + Delta-G solvation = -3815.211782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -40.83304 -39.77656 -38.13861 -36.67601 -35.26886 -33.91245 -32.82063 -31.62710 -30.97482 -28.40315 -27.93378 -27.75286 -24.99685 -24.27988 -22.58039 -21.13394 -21.07903 -20.36101 -19.30583 -18.88612 -18.22351 -17.44051 -16.99474 -16.12298 -15.76072 -15.41503 -15.18480 -14.97733 -14.73143 -14.62339 -14.22052 -13.73127 -13.54332 -13.27662 -13.00193 -12.89808 -12.85672 -12.63063 -12.57724 -12.38300 -12.29614 -12.16097 -11.80137 -11.69803 -11.49343 -11.39829 -11.17490 -11.13373 -10.85602 -10.57535 -10.18709 -10.12957 -9.95435 -9.71381 -9.53480 -9.00053 -8.61520 -8.16036 -8.09395 -6.28698 -3.79900 1.84589 2.25391 2.73454 3.04569 3.08671 3.16770 3.52215 3.76515 3.94885 4.08637 4.12534 4.23384 4.42971 4.46261 4.54601 4.57671 4.70877 4.87580 4.96760 5.02115 5.05605 5.17095 5.18532 5.22290 5.22611 5.26520 5.44689 5.49815 5.54981 5.59078 5.63331 5.66191 5.71282 5.71428 5.90137 5.95855 5.98870 6.21912 6.24091 6.33011 6.36231 6.96386 7.07520 7.13111 7.60922 7.88374 8.16848 8.63052 8.97945 9.45142 9.86543 10.84518 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.026876 B = 0.002106 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.559959 B =13294.032612 C =13475.289775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.054 4.054 4 C -0.145 4.145 5 C -0.137 4.137 6 C 0.530 3.470 7 O -0.530 6.530 8 N -0.697 5.697 9 C 0.104 3.896 10 H 0.133 0.867 11 C -0.161 4.161 12 H 0.119 0.881 13 C 0.068 3.932 14 N -0.483 5.483 15 C 0.031 3.969 16 C 0.455 3.545 17 O -0.558 6.558 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.061 3.939 28 C -0.167 4.167 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.402 0.598 40 H 0.043 0.957 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.046 0.954 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.566 -11.266 -27.114 30.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.145 4.145 3 C -0.057 4.057 4 C -0.203 4.203 5 C -0.195 4.195 6 C 0.316 3.684 7 O -0.405 6.405 8 N -0.347 5.347 9 C -0.003 4.003 10 H 0.150 0.850 11 C -0.181 4.181 12 H 0.137 0.863 13 C -0.060 4.060 14 N -0.207 5.207 15 C -0.101 4.101 16 C 0.240 3.760 17 O -0.439 6.439 18 N -0.233 5.233 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.163 4.163 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.068 4.068 28 C -0.187 4.187 29 H 0.137 0.863 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.236 0.764 40 H 0.061 0.939 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.809 -10.616 -26.487 29.864 hybrid contribution 0.729 -1.628 0.326 1.813 sum -8.081 -12.244 -26.161 29.994 Atomic orbital electron populations 1.23991 0.95852 1.02373 1.00568 1.22479 0.95651 0.96493 0.99829 1.19906 0.95672 0.96264 0.93899 1.21974 0.98837 0.96141 1.03319 1.21828 0.99276 1.02640 0.95733 1.20462 0.79353 0.81567 0.87010 1.90718 1.65342 1.37708 1.46757 1.45291 1.44202 1.21061 1.24131 1.21809 0.93265 0.96213 0.88974 0.84975 1.23997 1.01020 0.98677 0.94438 0.86311 1.22673 0.88309 1.01778 0.93243 1.65285 1.04417 1.49315 1.01644 1.22097 1.00402 0.96606 0.91004 1.19583 0.84811 0.88537 0.83059 1.90552 1.42479 1.28999 1.81886 1.42209 1.49083 1.21956 1.10030 1.19420 1.32435 1.03386 0.87920 0.86289 1.25038 0.97958 0.97805 0.95453 1.69625 1.44797 1.35259 1.02576 0.86670 0.81009 0.82957 0.78742 1.19624 1.20217 1.19541 1.22659 0.97581 0.95974 0.90537 1.23814 0.89954 1.04553 1.00425 0.86280 0.88121 0.87846 0.86783 0.91779 0.90810 0.91470 0.91715 0.91018 0.91796 0.76352 0.93858 0.87768 0.92893 0.89013 0.79753 0.91660 0.93624 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 13.70 29.01 0.40 -0.93 16 2 C -0.13 -1.01 8.00 -36.03 -0.29 -1.30 16 3 C -0.05 -0.39 0.84 -156.81 -0.13 -0.52 16 4 C -0.15 -0.79 7.02 37.16 0.26 -0.53 16 5 C -0.14 -0.69 8.35 37.15 0.31 -0.38 16 6 C 0.53 5.48 6.47 -10.98 -0.07 5.40 16 7 O -0.53 -7.81 15.60 5.56 0.09 -7.72 16 8 N -0.70 -6.04 5.35 -53.80 -0.29 -6.33 16 9 C 0.10 1.12 5.98 -67.93 -0.41 0.71 16 10 H 0.13 1.69 7.40 -51.93 -0.38 1.31 16 11 C -0.16 -1.92 7.05 -89.24 -0.63 -2.55 16 12 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 13 C 0.07 1.05 5.73 -2.18 -0.01 1.03 16 14 N -0.48 -7.75 4.98 -231.41 -1.15 -8.90 16 15 C 0.03 0.52 5.32 -4.97 -0.03 0.50 16 16 C 0.45 10.44 7.63 -10.98 -0.08 10.36 16 17 O -0.56 -15.05 14.80 5.55 0.08 -14.96 16 18 N -0.59 -14.28 5.09 -10.96 -0.06 -14.33 16 19 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 20 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 21 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 22 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 23 Si 0.88 19.58 27.74 -169.99 -4.71 14.87 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 27 C 0.06 0.73 6.26 -2.18 -0.01 0.71 16 28 C -0.17 -1.74 7.05 -89.23 -0.63 -2.37 16 29 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.10 0.60 5.69 -52.49 -0.30 0.31 16 32 H 0.11 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.06 0.27 7.56 -51.93 -0.39 -0.12 16 34 H 0.07 0.30 7.50 -51.93 -0.39 -0.09 16 35 H 0.07 0.44 7.50 -51.93 -0.39 0.05 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 38 H 0.06 0.24 7.57 -51.93 -0.39 -0.15 16 39 H 0.40 2.36 7.66 -40.82 -0.31 2.05 16 40 H 0.04 0.66 7.75 -51.93 -0.40 0.26 16 41 H 0.10 1.91 7.23 -51.93 -0.38 1.53 16 42 H 0.05 0.81 7.77 -51.93 -0.40 0.40 16 43 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 44 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.05 0.51 8.00 -51.93 -0.42 0.10 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -35.16 381.28 -8.42 -43.57 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -7.33 Total: 10.91 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.57 Total: 2.37 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.72 Total: -54.78 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.17 Total: -22.68 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.16 -8.42 -43.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114673059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.606 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds