Wall clock time and date at job start Fri Apr 10 2020 18:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47111 * 2 1 4 4 H 1.09006 * 115.56018 * 29.31183 * 3 2 1 5 5 C 1.52993 * 117.49912 * 243.61800 * 3 2 1 6 6 C 1.52992 * 117.50022 * 174.99450 * 3 2 1 7 7 H 1.08999 * 117.52117 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.50315 * 214.98091 * 6 3 2 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 6 3 10 10 N 1.34777 * 120.00290 * 179.97438 * 8 6 3 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 6 12 12 H 1.09004 * 115.52020 * 350.30268 * 11 10 8 13 13 C 1.53006 * 117.44197 * 204.88245 * 11 10 8 14 14 H 1.09003 * 119.52162 * 4.09497 * 13 11 10 15 15 C 1.54374 * 118.12480 * 159.12886 * 13 11 10 16 16 N 1.48557 * 104.59679 * 87.23249 * 15 13 11 17 17 C 1.46898 * 111.00314 * 200.95839 * 16 15 13 18 18 C 1.50705 * 109.47071 * 189.99987 * 17 16 15 19 19 O 1.21295 * 120.00027 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99724 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99925 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99723 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00190 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99838 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00098 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47016 * 89.99827 * 25 23 21 27 27 H 1.48494 * 109.47028 * 209.99980 * 25 23 21 28 28 H 1.48495 * 109.46881 * 330.00018 * 25 23 21 29 29 C 1.48562 * 104.21881 * 320.51565 * 16 15 13 30 30 C 1.52996 * 117.44395 * 135.72564 * 11 10 8 31 31 H 1.09003 * 119.52719 * 355.90447 * 30 11 10 32 32 H 1.08994 * 109.47860 * 300.00270 * 1 2 3 33 33 H 1.09005 * 109.46750 * 60.00585 * 1 2 3 34 34 H 1.09003 * 109.47288 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47307 * 240.00058 * 2 1 3 36 36 H 1.09005 * 109.46750 * 119.99414 * 2 1 3 37 37 H 1.09005 * 117.49750 * 145.01822 * 5 3 2 38 38 H 1.08998 * 117.51809 * 359.97438 * 5 3 2 39 39 H 0.97001 * 119.99727 * 359.97438 * 10 8 6 40 40 H 1.09003 * 110.41151 * 206.01178 * 15 13 11 41 41 H 1.08998 * 110.41589 * 328.44829 * 15 13 11 42 42 H 1.09004 * 109.46877 * 309.99959 * 17 16 15 43 43 H 1.08989 * 109.47363 * 69.99849 * 17 16 15 44 44 H 0.96993 * 120.00328 * 0.02562 * 20 18 17 45 45 H 0.97002 * 120.00089 * 180.02562 * 24 23 21 46 46 H 1.09006 * 110.41056 * 158.26214 * 29 16 15 47 47 H 1.08999 * 110.40861 * 280.57908 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1718 0.4814 5 6 2.8440 1.9075 -1.2157 6 6 3.5500 1.6579 0.1184 7 1 4.1806 0.7722 0.1959 8 6 4.0227 2.8621 0.8916 9 8 3.2156 3.6170 1.3911 10 7 5.3423 3.1000 1.0278 11 6 5.8018 4.2672 1.7846 12 1 5.0264 4.9804 2.0645 13 6 7.1855 4.8263 1.4472 14 1 7.7534 4.3936 0.6235 15 6 7.4966 6.2860 1.8417 16 7 7.9999 6.1977 3.2366 17 6 7.8742 7.4896 3.9244 18 6 8.6105 7.4330 5.2381 19 8 9.1832 6.4163 5.5691 20 7 8.6326 8.5121 6.0452 21 6 9.3021 8.4605 7.2406 22 1 9.8120 7.5552 7.5352 23 6 9.3244 9.5729 8.0729 24 7 8.7035 10.6742 7.7146 25 14 10.2371 9.5028 9.7013 26 1 11.6436 9.9346 9.4994 27 1 9.5772 10.4060 10.6779 28 1 10.2162 8.1118 10.2209 29 6 7.1356 5.1699 3.8720 30 6 6.9576 4.0612 2.7656 31 1 7.3560 3.0590 2.9236 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8901 37 1 2.7213 2.9428 -1.5343 38 1 3.0102 1.1859 -2.0156 39 1 5.9878 2.4960 0.6286 40 1 8.2625 6.7018 1.1868 41 1 6.5914 6.8918 1.8017 42 1 8.3016 8.2757 3.3019 43 1 6.8211 7.7030 4.1071 44 1 8.1744 9.3251 5.7808 45 1 8.7194 11.4509 8.2955 46 1 7.6296 4.7453 4.7460 47 1 6.1746 5.6016 4.1518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114853256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:55 Heat of formation + Delta-G solvation = -12.184315 kcal Electronic energy + Delta-G solvation = -25908.904118 eV Core-core repulsion = 22093.292746 eV Total energy + Delta-G solvation = -3815.611372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60014 -39.62432 -38.00518 -37.29392 -35.14368 -33.84789 -32.77393 -32.24944 -31.16747 -28.21450 -27.65866 -25.41186 -24.45749 -24.08301 -22.19086 -21.07526 -20.97383 -20.34050 -20.16444 -19.09461 -17.82958 -17.57310 -17.02269 -15.91584 -15.46292 -15.40133 -15.08498 -14.85201 -14.60299 -14.54594 -14.46453 -13.73412 -13.55460 -13.40696 -12.99287 -12.92632 -12.86409 -12.54328 -12.47316 -12.07804 -11.92104 -11.74949 -11.47002 -11.45859 -11.36107 -11.29520 -11.04573 -10.80456 -10.72461 -10.48872 -10.37348 -10.19547 -10.16043 -10.02964 -9.46624 -8.95330 -8.49067 -8.00199 -7.91898 -6.38586 -3.79316 2.13657 2.63129 3.20084 3.28406 3.34269 3.35372 3.62616 3.93205 4.01209 4.14555 4.26750 4.30850 4.35355 4.54431 4.62430 4.69326 4.75935 4.77568 4.90526 4.98641 4.99354 5.17004 5.21936 5.22975 5.27742 5.34335 5.46063 5.52588 5.56229 5.63526 5.66692 5.71622 5.72811 5.79300 5.85269 5.95436 6.01218 6.02030 6.27244 6.30067 6.38268 7.06034 7.17728 7.20485 7.58095 7.92923 8.09370 8.65321 9.21438 9.57936 10.10054 10.79272 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.027390 B = 0.001834 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.020340 B =15266.437112 C =15668.247265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.116 4.116 4 H 0.119 0.881 5 C -0.148 4.148 6 C -0.192 4.192 7 H 0.124 0.876 8 C 0.547 3.453 9 O -0.536 6.536 10 N -0.696 5.696 11 C 0.100 3.900 12 H 0.133 0.867 13 C -0.168 4.168 14 H 0.117 0.883 15 C 0.061 3.939 16 N -0.483 5.483 17 C 0.034 3.966 18 C 0.446 3.554 19 O -0.577 6.577 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.069 3.931 30 C -0.161 4.161 31 H 0.122 0.878 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.403 0.597 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.052 0.948 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.101 0.899 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.264 -17.252 -19.896 29.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.135 4.135 4 H 0.137 0.863 5 C -0.185 4.185 6 C -0.214 4.214 7 H 0.142 0.858 8 C 0.334 3.666 9 O -0.412 6.412 10 N -0.344 5.344 11 C -0.006 4.006 12 H 0.151 0.849 13 C -0.188 4.188 14 H 0.135 0.865 15 C -0.067 4.067 16 N -0.207 5.207 17 C -0.098 4.098 18 C 0.231 3.769 19 O -0.460 6.460 20 N -0.203 5.203 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.059 4.059 30 C -0.181 4.181 31 H 0.140 0.860 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.237 0.763 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.120 0.880 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.911 -17.333 -19.171 28.458 hybrid contribution -0.083 0.566 0.433 0.718 sum -11.994 -16.767 -18.738 27.858 Atomic orbital electron populations 1.21744 0.95053 1.01732 1.02251 1.21165 0.96422 0.93485 1.02196 1.22510 0.91149 0.98911 1.00914 0.86298 1.23123 1.01885 1.03297 0.90229 1.22286 0.98075 0.98733 1.02267 0.85793 1.19677 0.81877 0.85548 0.79519 1.90716 1.53789 1.48480 1.48223 1.45224 1.07117 1.27479 1.54620 1.21869 0.91548 0.90261 0.96913 0.84918 1.23777 0.98456 0.96382 1.00160 0.86478 1.22658 0.98933 0.93456 0.91665 1.65256 1.49333 1.05788 1.00297 1.22065 0.99399 0.92007 0.96326 1.19682 0.86157 0.85135 0.85938 1.90511 1.48658 1.31568 1.75294 1.41854 1.47658 1.12817 1.17953 1.19698 1.28683 1.00066 0.94310 0.87935 1.25251 0.97815 0.94940 0.99967 1.69615 1.43218 1.02968 1.38601 0.85859 0.79126 0.78285 0.81024 1.20424 1.20971 1.19464 1.23243 0.95227 0.90811 0.96576 1.24678 1.01810 0.99951 0.91663 0.86008 0.92387 0.92499 0.92553 0.91627 0.91319 0.88195 0.87694 0.76275 0.89363 0.93608 0.89125 0.93001 0.77516 0.91922 0.88029 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.87 37.16 0.37 -0.43 16 2 C -0.10 -0.53 6.22 -26.73 -0.17 -0.69 16 3 C -0.12 -0.85 5.25 -90.63 -0.48 -1.32 16 4 H 0.12 1.11 7.60 -51.93 -0.39 0.71 16 5 C -0.15 -0.91 9.88 -26.74 -0.26 -1.18 16 6 C -0.19 -1.41 5.91 -91.78 -0.54 -1.95 16 7 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 8 C 0.55 5.90 7.61 -10.98 -0.08 5.81 16 9 O -0.54 -8.04 15.82 5.55 0.09 -7.96 16 10 N -0.70 -6.44 5.56 -53.80 -0.30 -6.74 16 11 C 0.10 1.15 5.93 -67.93 -0.40 0.75 16 12 H 0.13 1.79 7.40 -51.93 -0.38 1.41 16 13 C -0.17 -1.87 6.97 -89.31 -0.62 -2.49 16 14 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 15 C 0.06 0.79 6.26 -2.19 -0.01 0.77 16 16 N -0.48 -8.18 4.98 -229.20 -1.14 -9.32 16 17 C 0.03 0.61 5.32 -4.97 -0.03 0.59 16 18 C 0.45 10.70 7.63 -10.98 -0.08 10.61 16 19 O -0.58 -15.80 14.80 5.54 0.08 -15.72 16 20 N -0.57 -14.54 5.29 -10.96 -0.06 -14.60 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 25 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 29 C 0.07 1.12 5.79 -0.37 0.00 1.12 16 30 C -0.16 -2.01 7.32 -87.50 -0.64 -2.65 16 31 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.29 7.88 -51.93 -0.41 -0.12 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.44 8.03 -51.93 -0.42 0.02 16 39 H 0.40 2.54 8.83 -40.82 -0.36 2.18 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.56 8.00 -51.93 -0.42 0.15 16 42 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 43 H 0.05 0.87 7.76 -51.94 -0.40 0.47 16 44 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.10 1.92 7.24 -51.93 -0.38 1.55 16 47 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -33.74 390.71 -10.56 -44.30 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.62 Total: 11.10 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.20 Total: 0.87 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.77 Total: -54.75 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.17 Total: -23.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.74 -10.56 -44.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114853256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.115 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds