Wall clock time and date at job start Fri Apr 10 2020 18:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47324 * 2 1 4 4 C 1.52993 * 109.47401 * 120.00345 * 2 1 3 5 5 C 1.50703 * 109.47346 * 184.99690 * 4 2 1 6 6 O 1.21280 * 119.99689 * 0.02562 * 5 4 2 7 7 N 1.34780 * 120.00052 * 179.97438 * 5 4 2 8 8 C 1.46494 * 119.99627 * 180.02562 * 7 5 4 9 9 H 1.09002 * 115.52146 * 9.41738 * 8 7 5 10 10 C 1.53005 * 117.44129 * 224.00063 * 8 7 5 11 11 H 1.08995 * 119.53646 * 4.16280 * 10 8 7 12 12 C 1.54383 * 118.12367 * 160.85905 * 10 8 7 13 13 N 1.48148 * 104.62177 * 87.18777 * 12 10 8 14 14 C 1.36939 * 127.83835 * 140.41206 * 13 12 10 15 15 H 1.08004 * 119.99669 * 344.85747 * 14 13 12 16 16 C 1.38808 * 119.99706 * 164.85367 * 14 13 12 17 17 N 1.31610 * 120.00377 * 350.65208 * 16 14 13 18 18 Si 1.86804 * 119.99608 * 170.65318 * 16 14 13 19 19 H 1.48509 * 109.47161 * 60.00051 * 18 16 14 20 20 H 1.48496 * 109.47023 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47079 * 300.00086 * 18 16 14 22 22 C 1.51503 * 104.52609 * 320.13585 * 13 12 10 23 23 C 1.53000 * 117.43958 * 154.83483 * 8 7 5 24 24 H 1.09005 * 119.54421 * 355.83638 * 23 8 7 25 25 N 1.46505 * 109.46847 * 240.00666 * 2 1 3 26 26 C 1.46762 * 124.35204 * 120.00065 * 25 2 1 27 27 C 1.54480 * 105.47406 * 197.01338 * 26 25 2 28 28 C 1.54625 * 101.76604 * 334.58310 * 27 26 25 29 29 C 1.34421 * 124.34673 * 299.69575 * 25 2 1 30 30 O 1.21278 * 124.94217 * 359.58118 * 29 25 2 31 31 H 1.09006 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47087 * 299.99453 * 1 2 3 33 33 H 1.08999 * 109.47186 * 59.99641 * 1 2 3 34 34 H 1.09007 * 109.47079 * 65.00088 * 4 2 1 35 35 H 1.08994 * 109.47457 * 305.00284 * 4 2 1 36 36 H 0.96999 * 119.99995 * 0.02562 * 7 5 4 37 37 H 1.08999 * 110.41006 * 205.97662 * 12 10 8 38 38 H 1.09008 * 110.40510 * 328.40547 * 12 10 8 39 39 H 0.96998 * 120.00247 * 179.97438 * 17 16 14 40 40 H 1.08999 * 111.97296 * 281.15841 * 22 13 12 41 41 H 1.08998 * 110.44137 * 157.61583 * 22 13 12 42 42 H 1.08998 * 110.24334 * 316.01352 * 26 25 2 43 43 H 1.09003 * 110.24725 * 78.01214 * 26 25 2 44 44 H 1.09004 * 110.96745 * 92.69883 * 27 26 25 45 45 H 1.08999 * 110.97154 * 216.42811 * 27 26 25 46 46 H 1.09000 * 110.49079 * 143.47077 * 28 27 26 47 47 H 1.09000 * 110.48927 * 266.12418 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6150 1.3125 6 8 4.1450 -0.0204 0.4444 7 7 4.2150 -1.1798 2.3346 8 6 5.6749 -1.0760 2.3965 9 1 6.1285 -0.3969 1.6745 10 6 6.4567 -2.3387 2.7643 11 1 5.9241 -3.2800 2.8999 12 6 7.9578 -2.3950 2.4079 13 7 8.6407 -1.7733 3.5662 14 6 9.8139 -2.1606 4.1568 15 1 10.2259 -3.1373 3.9498 16 6 10.4736 -1.2980 5.0214 17 7 10.0773 -0.0479 5.1330 18 14 11.9239 -1.9114 6.0263 19 1 12.9923 -2.3900 5.1125 20 1 12.4493 -0.8037 6.8642 21 1 11.4834 -3.0280 6.9005 22 6 7.7537 -0.6062 3.9488 23 6 6.3315 -1.1811 3.7744 24 1 5.7056 -1.2592 4.6635 25 7 2.0183 -0.6905 -1.1963 26 6 2.8655 -0.0711 -2.2222 27 6 2.7608 -0.9948 -3.4560 28 6 2.4038 -2.3511 -2.8050 29 6 1.7527 -1.9745 -1.4924 30 8 1.0859 -2.7215 -0.8081 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.7517 -1.7716 1.2054 35 1 1.6055 -0.2619 2.1369 36 1 3.7327 -1.6550 3.0292 37 1 8.2810 -3.4288 2.2861 38 1 8.1544 -1.8249 1.4999 39 1 10.5381 0.5548 5.7374 40 1 7.9006 0.2505 3.2910 41 1 7.9244 -0.3227 4.9873 42 1 2.4966 0.9255 -2.4647 43 1 3.8981 -0.0182 -1.8772 44 1 1.9674 -0.6627 -4.1256 45 1 3.7137 -1.0527 -3.9820 46 1 1.7071 -2.9048 -3.4345 47 1 3.3052 -2.9369 -2.6250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115116853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:06 Heat of formation + Delta-G solvation = -8.522495 kcal Electronic energy + Delta-G solvation = -27473.926746 eV Core-core repulsion = 23658.474162 eV Total energy + Delta-G solvation = -3815.452584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.83748 -39.61150 -38.22504 -36.46115 -35.05979 -34.33282 -32.63743 -30.55488 -30.03110 -28.19882 -27.65198 -27.14263 -25.54778 -23.09929 -22.10713 -21.80796 -20.56067 -20.22760 -19.21586 -18.89977 -17.07632 -17.04977 -16.82809 -16.66944 -16.14824 -15.27385 -15.06803 -14.69041 -14.23774 -14.08561 -13.85981 -13.82934 -13.60442 -13.23566 -13.06433 -12.84785 -12.76397 -12.27372 -12.24828 -12.16163 -12.00028 -11.74650 -11.47517 -11.46527 -11.35663 -11.18985 -11.00876 -10.81466 -10.44277 -10.21944 -10.15922 -9.78479 -9.72245 -9.66592 -9.20429 -8.80815 -8.74491 -8.32604 -6.88483 -5.79391 -3.12507 2.48393 2.65503 2.85630 3.14170 3.39212 3.43495 3.44691 4.17480 4.30875 4.31263 4.46695 4.54303 4.60804 4.64101 4.84697 4.96850 5.10728 5.15692 5.23145 5.32065 5.35271 5.38862 5.40200 5.43139 5.46132 5.54059 5.56286 5.59528 5.67894 5.78931 5.88480 5.90019 5.93093 6.14841 6.23784 6.46354 6.53037 6.68232 6.80712 6.88791 7.04705 7.29483 7.50190 7.59284 7.69102 8.07522 8.14790 8.29988 9.06370 9.72732 10.49528 11.35621 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.002483 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.781575 B =11273.741560 C =11623.840485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.174 3.826 3 H 0.096 0.904 4 C -0.162 4.162 5 C 0.518 3.482 6 O -0.538 6.538 7 N -0.699 5.699 8 C 0.097 3.903 9 H 0.131 0.869 10 C -0.183 4.183 11 H 0.102 0.898 12 C 0.159 3.841 13 N -0.598 5.598 14 C -0.226 4.226 15 H 0.076 0.924 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.913 3.087 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.186 3.814 23 C -0.179 4.179 24 H 0.101 0.899 25 N -0.601 5.601 26 C 0.105 3.895 27 C -0.133 4.133 28 C -0.156 4.156 29 C 0.516 3.484 30 O -0.540 6.540 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.398 0.602 37 H 0.051 0.949 38 H 0.025 0.975 39 H 0.255 0.745 40 H 0.031 0.969 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.159 0.683 -13.450 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.071 3.929 3 H 0.114 0.886 4 C -0.203 4.203 5 C 0.305 3.695 6 O -0.416 6.416 7 N -0.347 5.347 8 C -0.009 4.009 9 H 0.148 0.852 10 C -0.205 4.205 11 H 0.120 0.880 12 C 0.032 3.968 13 N -0.322 5.322 14 C -0.354 4.354 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.564 5.564 18 Si 0.743 3.257 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.061 3.939 23 C -0.200 4.200 24 H 0.119 0.881 25 N -0.335 5.335 26 C -0.018 4.018 27 C -0.171 4.171 28 C -0.196 4.196 29 C 0.304 3.696 30 O -0.418 6.418 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.232 0.768 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.116 0.884 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.871 0.861 -13.487 24.031 hybrid contribution 0.525 -0.571 1.053 1.309 sum -19.345 0.289 -12.434 22.998 Atomic orbital electron populations 1.22181 0.94230 1.03731 1.02335 1.20635 0.93637 0.96362 0.82300 0.88551 1.22195 0.92808 1.05161 1.00154 1.20505 0.89618 0.78209 0.81191 1.90633 1.70328 1.42391 1.38202 1.45429 1.06878 1.56136 1.26281 1.21843 0.78442 1.00607 1.00042 0.85187 1.24357 0.98192 0.92655 1.05298 0.88032 1.21051 0.87698 0.97136 0.90891 1.45985 1.23274 1.31544 1.31432 1.18973 0.96920 0.98120 1.21395 0.90582 1.24864 0.98857 0.95163 1.01449 1.69870 1.42896 1.03533 1.40055 0.86194 0.82042 0.77497 0.79991 1.21010 1.21553 1.21131 1.21632 0.81647 0.88769 1.01806 1.24573 1.00641 1.03150 0.91613 0.88120 1.48215 1.50373 1.12029 1.22838 1.22151 0.96603 0.96505 0.86566 1.22608 1.03254 0.94099 0.97092 1.22328 1.02804 0.98997 0.95518 1.20878 0.79602 0.81584 0.87529 1.90671 1.40522 1.54575 1.56046 0.90915 0.91244 0.92126 0.87358 0.87875 0.76803 0.93051 0.95711 0.93516 0.95077 0.89052 0.90818 0.89386 0.90347 0.89227 0.88375 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.20 37.16 0.34 -1.01 16 2 C 0.17 1.68 2.43 -67.93 -0.16 1.52 16 3 H 0.10 0.91 7.88 -51.93 -0.41 0.50 16 4 C -0.16 -1.65 5.12 -27.89 -0.14 -1.79 16 5 C 0.52 6.96 7.69 -10.98 -0.08 6.88 16 6 O -0.54 -8.63 13.21 5.56 0.07 -8.56 16 7 N -0.70 -9.44 5.56 -53.80 -0.30 -9.74 16 8 C 0.10 1.63 5.97 -67.93 -0.41 1.22 16 9 H 0.13 2.47 7.40 -51.93 -0.38 2.08 16 10 C -0.18 -3.33 7.05 -89.29 -0.63 -3.96 16 11 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 12 C 0.16 3.40 7.05 -2.41 -0.02 3.39 16 13 N -0.60 -15.42 3.44 -165.99 -0.57 -15.99 16 14 C -0.23 -6.32 10.36 -15.06 -0.16 -6.48 16 15 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 16 C -0.01 -0.18 5.41 -17.44 -0.09 -0.27 16 17 N -0.92 -26.84 10.84 55.49 0.60 -26.24 16 18 Si 0.91 21.96 29.56 -169.99 -5.03 16.93 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.19 4.46 5.90 -0.48 0.00 4.46 16 23 C -0.18 -3.37 6.96 -89.29 -0.62 -3.99 16 24 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 25 N -0.60 -6.28 2.20 -164.84 -0.36 -6.64 16 26 C 0.10 0.92 6.81 -3.12 -0.02 0.89 16 27 C -0.13 -0.87 7.18 -25.10 -0.18 -1.05 16 28 C -0.16 -1.33 6.86 -26.74 -0.18 -1.51 16 29 C 0.52 6.07 7.40 -10.85 -0.08 5.99 16 30 O -0.54 -7.96 15.07 5.56 0.08 -7.88 16 31 H 0.07 0.73 6.82 -51.93 -0.35 0.38 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.11 1.23 6.60 -51.93 -0.34 0.89 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 4.40 8.83 -40.82 -0.36 4.04 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 2.42 6.58 -51.93 -0.34 2.08 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.97 6.80 -51.93 -0.35 0.61 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -33.47 375.54 -9.87 -43.34 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.59 Total: 4.83 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.44 Total: 4.28 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.63 Total: -58.61 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.16 Total: -16.44 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.47 -9.87 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115116853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.820 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds