Wall clock time and date at job start Fri Apr 10 2020 18:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 H 1.08997 * 109.47329 * 54.99688 * 3 2 1 5 5 C 1.50702 * 109.46949 * 175.00403 * 3 2 1 6 6 O 1.21277 * 119.99914 * 120.00362 * 5 3 2 7 7 N 1.34774 * 119.99768 * 299.99506 * 5 3 2 8 8 C 1.46501 * 120.00052 * 180.02562 * 7 5 3 9 9 H 1.09001 * 115.51371 * 9.58064 * 8 7 5 10 10 C 1.57119 * 116.92331 * 222.99219 * 8 7 5 11 11 H 1.08998 * 119.80241 * 3.76347 * 10 8 7 12 12 C 1.54790 * 118.02265 * 161.34577 * 10 8 7 13 13 N 1.48142 * 104.41509 * 86.47528 * 12 10 8 14 14 C 1.36941 * 127.83913 * 140.37064 * 13 12 10 15 15 H 1.08001 * 120.00294 * 195.57326 * 14 13 12 16 16 C 1.38818 * 119.99817 * 15.57284 * 14 13 12 17 17 N 1.31624 * 120.00001 * 9.17236 * 16 14 13 18 18 Si 1.86793 * 120.00024 * 189.17797 * 16 14 13 19 19 H 1.48493 * 109.47449 * 85.00062 * 18 16 14 20 20 H 1.48497 * 109.46969 * 324.99546 * 18 16 14 21 21 H 1.48500 * 109.47095 * 204.99927 * 18 16 14 22 22 C 1.48144 * 104.32599 * 320.10566 * 13 12 10 23 23 C 1.52994 * 117.44341 * 155.00257 * 8 7 5 24 24 H 1.08998 * 119.54381 * 354.23718 * 23 8 7 25 25 N 1.46503 * 109.47054 * 295.00024 * 3 2 1 26 26 C 1.46762 * 124.35266 * 120.00065 * 25 3 2 27 27 C 1.54475 * 105.47400 * 197.01844 * 26 25 3 28 28 C 1.54622 * 101.76820 * 334.58432 * 27 26 25 29 29 C 1.34424 * 124.34640 * 299.70473 * 25 3 2 30 30 O 1.21275 * 124.94474 * 359.56133 * 29 25 3 31 31 H 1.09005 * 109.47236 * 300.00178 * 1 2 3 32 32 H 1.09002 * 109.47360 * 59.99729 * 1 2 3 33 33 H 1.08995 * 109.47516 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46622 * 239.99704 * 2 1 3 35 35 H 1.08994 * 109.47024 * 120.00230 * 2 1 3 36 36 H 0.97000 * 120.00298 * 0.02562 * 7 5 3 37 37 H 1.08999 * 110.53920 * 327.73442 * 12 10 8 38 38 H 1.08997 * 110.46222 * 205.17476 * 12 10 8 39 39 H 0.96996 * 119.99851 * 180.02562 * 17 16 14 40 40 H 1.09003 * 110.40812 * 158.63555 * 22 13 12 41 41 H 1.08999 * 110.40686 * 280.94758 * 22 13 12 42 42 H 1.09005 * 110.24176 * 316.02233 * 26 25 3 43 43 H 1.09002 * 110.24401 * 77.92338 * 26 25 3 44 44 H 1.09002 * 110.97048 * 92.70706 * 27 26 25 45 45 H 1.09007 * 110.96589 * 216.46090 * 27 26 25 46 46 H 1.08994 * 110.49150 * 143.47649 * 28 27 26 47 47 H 1.09006 * 110.48732 * 266.12306 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4442 0.1237 6 8 4.2216 1.9435 -0.7478 7 7 4.1298 0.8910 1.2030 8 6 5.5898 0.8932 1.3237 9 1 6.1207 1.4985 0.5889 10 6 6.2638 -0.4330 1.8292 11 1 5.6518 -1.3162 2.0119 12 6 7.7751 -0.6297 1.5585 13 7 8.4439 0.0332 2.7022 14 6 9.5521 -0.3891 3.3870 15 1 9.7910 0.0438 4.3472 16 6 10.3684 -1.3735 2.8470 17 7 10.1855 -1.7725 1.6062 18 14 11.7262 -2.1320 3.8815 19 1 11.1676 -3.2415 4.6951 20 1 12.2993 -1.0985 4.7807 21 1 12.7913 -2.6589 2.9909 22 6 7.6459 1.2598 2.9328 23 6 6.1810 0.8149 2.7326 24 1 5.5180 0.8559 3.5967 25 7 1.6524 2.0975 -1.2518 26 6 0.8076 3.2948 -1.3330 27 6 0.3194 3.3563 -2.7973 28 6 1.4366 2.5825 -3.5349 29 6 2.0296 1.6822 -2.4734 30 8 2.7398 0.7240 -2.6928 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.5862 0.4915 1.9000 37 1 8.0613 -0.1515 0.6217 38 1 8.0233 -1.6908 1.5360 39 1 10.7556 -2.4606 1.2290 40 1 7.7965 1.6259 3.9484 41 1 7.9137 2.0292 2.2086 42 1 -0.0416 3.2038 -0.6557 43 1 1.3894 4.1840 -1.0902 44 1 -0.6419 2.8548 -2.9094 45 1 0.2628 4.3873 -3.1466 46 1 1.0177 1.9918 -4.3495 47 1 2.1929 3.2712 -3.9116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115261601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:21 Heat of formation + Delta-G solvation = -2.846557 kcal Electronic energy + Delta-G solvation = -27601.944519 eV Core-core repulsion = 23786.738063 eV Total energy + Delta-G solvation = -3815.206457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.98276 -39.36303 -38.06838 -36.46287 -35.10816 -34.38511 -32.53859 -31.28923 -30.20836 -27.83681 -27.45845 -27.08198 -25.46685 -22.68153 -22.22998 -22.09957 -20.71218 -20.35328 -19.21837 -18.99202 -17.51857 -17.15855 -16.80458 -16.23797 -15.94335 -15.60138 -14.71240 -14.64080 -14.47886 -14.34349 -13.83099 -13.66481 -13.47682 -13.25046 -13.21334 -12.92860 -12.81200 -12.70795 -12.25674 -12.15965 -11.87160 -11.61428 -11.47829 -11.40543 -11.32314 -11.21407 -10.96852 -10.81055 -10.36151 -10.17028 -10.13847 -9.88274 -9.70967 -9.70048 -9.19465 -8.81527 -8.71554 -8.19748 -6.84532 -5.76843 -3.11868 2.48428 2.63489 2.70060 3.26615 3.40333 3.44787 3.47152 4.10558 4.16485 4.29761 4.45797 4.47784 4.55491 4.59648 4.65106 4.82293 4.94103 5.10240 5.13321 5.15335 5.26023 5.36633 5.38228 5.39937 5.42120 5.51766 5.59999 5.61908 5.65136 5.78570 5.85525 5.90822 5.94710 6.18175 6.26717 6.31581 6.55034 6.70526 6.84824 6.91521 6.98458 7.40366 7.57421 7.59628 7.74700 8.14976 8.23233 8.34097 9.13096 9.75838 10.53243 11.37259 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.027332 B = 0.002500 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.202042 B =11195.076332 C =11349.310428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.146 3.854 4 H 0.112 0.888 5 C 0.504 3.496 6 O -0.517 6.517 7 N -0.696 5.696 8 C 0.094 3.906 9 H 0.132 0.868 10 C -0.179 4.179 11 H 0.103 0.897 12 C 0.185 3.815 13 N -0.593 5.593 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.914 5.914 18 Si 0.914 3.086 19 H -0.288 1.288 20 H -0.280 1.280 21 H -0.290 1.290 22 C 0.155 3.845 23 C -0.179 4.179 24 H 0.100 0.900 25 N -0.608 5.608 26 C 0.104 3.896 27 C -0.129 4.129 28 C -0.155 4.155 29 C 0.524 3.476 30 O -0.511 6.511 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.397 0.603 37 H 0.026 0.974 38 H 0.091 0.909 39 H 0.255 0.745 40 H 0.051 0.949 41 H 0.026 0.974 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.496 9.723 -4.204 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.039 3.961 4 H 0.130 0.870 5 C 0.288 3.712 6 O -0.391 6.391 7 N -0.345 5.345 8 C -0.012 4.012 9 H 0.149 0.851 10 C -0.200 4.200 11 H 0.121 0.879 12 C 0.059 3.941 13 N -0.317 5.317 14 C -0.357 4.357 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.560 5.560 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.206 1.206 21 H -0.216 1.216 22 C 0.028 3.972 23 C -0.200 4.200 24 H 0.118 0.882 25 N -0.343 5.343 26 C -0.019 4.019 27 C -0.167 4.167 28 C -0.195 4.195 29 C 0.312 3.688 30 O -0.384 6.384 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.230 0.770 37 H 0.044 0.956 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.118 0.882 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.350 9.389 -4.927 27.478 hybrid contribution 0.373 -0.550 1.052 1.244 sum -24.976 8.839 -3.875 26.776 Atomic orbital electron populations 1.21705 0.94623 1.02109 1.01760 1.21907 0.96996 0.94136 1.04561 1.20836 0.92107 0.95673 0.87503 0.87025 1.20742 0.90213 0.78417 0.81841 1.90726 1.64868 1.44368 1.39089 1.45295 1.06906 1.59704 1.22620 1.22495 0.78896 1.01667 0.98128 0.85062 1.25466 1.00280 0.90424 1.03850 0.87905 1.21125 0.83020 1.00360 0.89578 1.45187 1.29989 1.19616 1.36859 1.18979 0.99315 1.18277 0.99109 0.90541 1.24926 0.98519 1.00925 0.95923 1.69905 1.40999 1.32602 1.12449 0.86116 0.81199 0.79243 0.79051 1.21470 1.20604 1.21622 1.21123 0.87157 0.90344 0.98567 1.24307 0.99218 1.03899 0.92588 0.88159 1.47909 1.51771 1.29389 1.05229 1.22092 0.94100 0.87691 0.97973 1.22563 0.98452 1.01905 0.93810 1.22322 0.99418 0.99607 0.98168 1.20734 0.79476 0.84614 0.83981 1.90747 1.35929 1.28312 1.83459 0.92639 0.92594 0.92198 0.89522 0.90256 0.76955 0.95569 0.89092 0.93475 0.93029 0.95613 0.90372 0.91084 0.90005 0.89168 0.88203 0.87797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.80 37.16 0.36 -0.63 16 2 C -0.14 -1.31 5.30 -26.73 -0.14 -1.45 16 3 C 0.15 1.51 2.67 -69.08 -0.18 1.32 16 4 H 0.11 0.78 8.07 -51.93 -0.42 0.36 16 5 C 0.50 7.53 6.85 -10.99 -0.08 7.46 16 6 O -0.52 -10.20 14.40 -10.08 -0.15 -10.35 16 7 N -0.70 -9.70 5.43 -51.65 -0.28 -9.98 16 8 C 0.09 1.67 6.19 -65.70 -0.41 1.26 16 9 H 0.13 2.69 7.40 -51.93 -0.38 2.30 16 10 C -0.18 -3.55 7.25 -86.77 -0.63 -4.18 16 11 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 12 C 0.19 4.66 5.75 -2.20 -0.01 4.64 16 13 N -0.59 -15.58 3.37 -168.61 -0.57 -16.15 16 14 C -0.23 -6.47 10.35 -15.06 -0.16 -6.63 16 15 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 16 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 17 N -0.91 -27.43 10.87 55.49 0.60 -26.82 16 18 Si 0.91 22.24 29.56 -169.99 -5.03 17.22 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 C 0.15 3.33 7.03 -2.41 -0.02 3.32 16 23 C -0.18 -3.22 6.91 -89.22 -0.62 -3.84 16 24 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 25 N -0.61 -6.28 2.08 -166.16 -0.35 -6.63 16 26 C 0.10 0.64 7.30 -3.13 -0.02 0.62 16 27 C -0.13 -0.62 7.18 -25.10 -0.18 -0.80 16 28 C -0.15 -1.28 6.86 -26.74 -0.18 -1.46 16 29 C 0.52 6.87 6.69 -10.85 -0.07 6.80 16 30 O -0.51 -9.29 15.33 -10.08 -0.15 -9.44 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.40 7.75 -51.93 -0.40 0.00 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 1.13 6.67 -51.93 -0.35 0.78 16 35 H 0.08 0.65 7.43 -51.93 -0.39 0.27 16 36 H 0.40 4.18 8.19 -40.82 -0.33 3.85 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 2.53 6.52 -51.93 -0.34 2.19 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.27 8.14 -51.92 -0.42 -0.15 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 377.92 15.07 5.70 5.70 Total: -1.00 -37.15 377.92 -10.30 -47.45 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.65 Total: 2.82 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -2.43 Total: 6.18 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.59 Total: -59.57 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.30 Total: -19.79 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.15 -10.30 -47.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115261601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.606 kcal (2) G-P(sol) polarization free energy of solvation -37.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds