Wall clock time and date at job start Fri Apr 10 2020 18:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47257 * 2 1 4 4 H 1.08997 * 109.47329 * 54.99688 * 3 2 1 5 5 C 1.50702 * 109.46949 * 175.00403 * 3 2 1 6 6 O 1.21277 * 119.99914 * 120.00362 * 5 3 2 7 7 N 1.34774 * 119.99768 * 299.99506 * 5 3 2 8 8 C 1.46501 * 120.00052 * 180.02562 * 7 5 3 9 9 H 1.09001 * 115.51371 * 9.58064 * 8 7 5 10 10 C 1.57119 * 116.92331 * 222.99219 * 8 7 5 11 11 H 1.08998 * 119.80241 * 3.76347 * 10 8 7 12 12 C 1.54790 * 118.02265 * 161.34577 * 10 8 7 13 13 N 1.48142 * 104.41509 * 86.47528 * 12 10 8 14 14 C 1.36941 * 127.83913 * 140.37064 * 13 12 10 15 15 H 1.08001 * 120.00294 * 195.57326 * 14 13 12 16 16 C 1.38818 * 119.99817 * 15.57284 * 14 13 12 17 17 N 1.31624 * 120.00001 * 9.17236 * 16 14 13 18 18 Si 1.86793 * 120.00024 * 189.17797 * 16 14 13 19 19 H 1.48493 * 109.47449 * 85.00062 * 18 16 14 20 20 H 1.48497 * 109.46969 * 324.99546 * 18 16 14 21 21 H 1.48500 * 109.47095 * 204.99927 * 18 16 14 22 22 C 1.48144 * 104.32599 * 320.10566 * 13 12 10 23 23 C 1.52994 * 117.44341 * 155.00257 * 8 7 5 24 24 H 1.08998 * 119.54381 * 354.23718 * 23 8 7 25 25 N 1.46503 * 109.47054 * 295.00024 * 3 2 1 26 26 C 1.46762 * 124.35266 * 120.00065 * 25 3 2 27 27 C 1.54475 * 105.47400 * 197.01844 * 26 25 3 28 28 C 1.54622 * 101.76820 * 334.58432 * 27 26 25 29 29 C 1.34424 * 124.34640 * 299.70473 * 25 3 2 30 30 O 1.21275 * 124.94474 * 359.56133 * 29 25 3 31 31 H 1.09005 * 109.47236 * 300.00178 * 1 2 3 32 32 H 1.09002 * 109.47360 * 59.99729 * 1 2 3 33 33 H 1.08995 * 109.47516 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46622 * 239.99704 * 2 1 3 35 35 H 1.08994 * 109.47024 * 120.00230 * 2 1 3 36 36 H 0.97000 * 120.00298 * 0.02562 * 7 5 3 37 37 H 1.08999 * 110.53920 * 327.73442 * 12 10 8 38 38 H 1.08997 * 110.46222 * 205.17476 * 12 10 8 39 39 H 0.96996 * 119.99851 * 180.02562 * 17 16 14 40 40 H 1.09003 * 110.40812 * 158.63555 * 22 13 12 41 41 H 1.08999 * 110.40686 * 280.94758 * 22 13 12 42 42 H 1.09005 * 110.24176 * 316.02233 * 26 25 3 43 43 H 1.09002 * 110.24401 * 77.92338 * 26 25 3 44 44 H 1.09002 * 110.97048 * 92.70706 * 27 26 25 45 45 H 1.09007 * 110.96589 * 216.46090 * 27 26 25 46 46 H 1.08994 * 110.49150 * 143.47649 * 28 27 26 47 47 H 1.09006 * 110.48732 * 266.12306 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4442 0.1237 6 8 4.2216 1.9435 -0.7478 7 7 4.1298 0.8910 1.2030 8 6 5.5898 0.8932 1.3237 9 1 6.1207 1.4985 0.5889 10 6 6.2638 -0.4330 1.8292 11 1 5.6518 -1.3162 2.0119 12 6 7.7751 -0.6297 1.5585 13 7 8.4439 0.0332 2.7022 14 6 9.5521 -0.3891 3.3870 15 1 9.7910 0.0438 4.3472 16 6 10.3684 -1.3735 2.8470 17 7 10.1855 -1.7725 1.6062 18 14 11.7262 -2.1320 3.8815 19 1 11.1676 -3.2415 4.6951 20 1 12.2993 -1.0985 4.7807 21 1 12.7913 -2.6589 2.9909 22 6 7.6459 1.2598 2.9328 23 6 6.1810 0.8149 2.7326 24 1 5.5180 0.8559 3.5967 25 7 1.6524 2.0975 -1.2518 26 6 0.8076 3.2948 -1.3330 27 6 0.3194 3.3563 -2.7973 28 6 1.4366 2.5825 -3.5349 29 6 2.0296 1.6822 -2.4734 30 8 2.7398 0.7240 -2.6928 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.5862 0.4915 1.9000 37 1 8.0613 -0.1515 0.6217 38 1 8.0233 -1.6908 1.5360 39 1 10.7556 -2.4606 1.2290 40 1 7.7965 1.6259 3.9484 41 1 7.9137 2.0292 2.2086 42 1 -0.0416 3.2038 -0.6557 43 1 1.3894 4.1840 -1.0902 44 1 -0.6419 2.8548 -2.9094 45 1 0.2628 4.3873 -3.1466 46 1 1.0177 1.9918 -4.3495 47 1 2.1929 3.2712 -3.9116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115261601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:21 Heat of formation + Delta-G solvation = -28.267942 kcal Electronic energy + Delta-G solvation = -27603.046873 eV Core-core repulsion = 23786.738063 eV Total energy + Delta-G solvation = -3816.308810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.90739 -40.67893 -39.56563 -37.41820 -36.11877 -35.84247 -34.26396 -32.10015 -31.90541 -28.95923 -28.56222 -28.34292 -27.30798 -23.89856 -23.25519 -22.69409 -22.12211 -21.93820 -20.87017 -20.00832 -18.89833 -18.49425 -18.08681 -17.23652 -17.04306 -16.74531 -16.45358 -15.76242 -15.66289 -15.38500 -15.20653 -14.93223 -14.66934 -14.56713 -14.29150 -13.89684 -13.77576 -13.67336 -13.41331 -13.30086 -13.20344 -12.98837 -12.90953 -12.71572 -12.40684 -12.18467 -12.12503 -12.06241 -12.00134 -11.88983 -11.78140 -11.68396 -11.08195 -10.85442 -10.77779 -10.66469 -9.69562 -9.64854 -8.96784 -7.93987 -5.32445 1.43271 1.44903 1.48236 1.54686 1.56560 1.86129 2.20047 2.46879 2.76694 3.25304 3.38977 3.51287 3.62960 3.71145 3.77208 3.84531 3.89868 3.96931 4.08294 4.08908 4.23826 4.34265 4.37117 4.45746 4.49594 4.70247 4.71303 4.78039 4.79354 4.86052 4.88566 4.95242 5.05841 5.12043 5.17377 5.24358 5.26069 5.36524 5.37653 5.41614 5.49461 5.59528 5.60032 6.12525 6.18471 6.47135 6.95819 7.16261 7.29258 7.63849 8.42532 9.19919 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.027332 B = 0.002500 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.202042 B =11195.076332 C =11349.310428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C 0.149 3.851 4 H 0.161 0.839 5 C 0.496 3.504 6 O -0.572 6.572 7 N -0.679 5.679 8 C 0.112 3.888 9 H 0.098 0.902 10 C -0.190 4.190 11 H 0.124 0.876 12 C 0.189 3.811 13 N -0.616 5.616 14 C -0.242 4.242 15 H 0.088 0.912 16 C -0.067 4.067 17 N -0.952 5.952 18 Si 0.986 3.014 19 H -0.281 1.281 20 H -0.265 1.265 21 H -0.297 1.297 22 C 0.146 3.854 23 C -0.146 4.146 24 H 0.145 0.855 25 N -0.606 5.606 26 C 0.096 3.904 27 C -0.114 4.114 28 C -0.155 4.155 29 C 0.504 3.496 30 O -0.579 6.579 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.093 0.907 36 H 0.419 0.581 37 H -0.013 1.013 38 H 0.056 0.944 39 H 0.250 0.750 40 H 0.071 0.929 41 H 0.015 0.985 42 H 0.114 0.886 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.114 0.886 46 H 0.106 0.894 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.188 11.302 -1.575 32.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C 0.042 3.958 4 H 0.178 0.822 5 C 0.283 3.717 6 O -0.450 6.450 7 N -0.330 5.330 8 C 0.004 3.996 9 H 0.116 0.884 10 C -0.212 4.212 11 H 0.141 0.859 12 C 0.063 3.937 13 N -0.340 5.340 14 C -0.370 4.370 15 H 0.105 0.895 16 C -0.260 4.260 17 N -0.599 5.599 18 Si 0.813 3.187 19 H -0.207 1.207 20 H -0.189 1.189 21 H -0.223 1.223 22 C 0.020 3.980 23 C -0.167 4.167 24 H 0.162 0.838 25 N -0.339 5.339 26 C -0.025 4.025 27 C -0.151 4.151 28 C -0.195 4.195 29 C 0.294 3.706 30 O -0.458 6.458 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.257 0.743 37 H 0.005 0.995 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.033 0.967 42 H 0.132 0.868 43 H 0.091 0.909 44 H 0.119 0.881 45 H 0.133 0.867 46 H 0.125 0.875 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -29.133 11.024 -2.236 31.230 hybrid contribution 1.536 -0.957 0.174 1.819 sum -27.597 10.067 -2.062 29.448 Atomic orbital electron populations 1.21662 0.92026 1.02662 1.03034 1.21885 0.99116 0.93115 1.03125 1.21039 0.88374 0.97107 0.89250 0.82181 1.21786 0.92345 0.76888 0.80708 1.90712 1.66571 1.46774 1.40926 1.45088 1.05073 1.59520 1.23319 1.21981 0.81092 0.99113 0.97391 0.88422 1.25142 0.97250 0.92424 1.06375 0.85855 1.20804 0.86917 0.97734 0.88215 1.45496 1.30328 1.21522 1.36652 1.19444 0.99879 1.18088 0.99593 0.89482 1.25866 1.01330 1.01755 0.97083 1.70135 1.42150 1.33237 1.14401 0.84990 0.77847 0.78498 0.77338 1.20747 1.18950 1.22332 1.21304 0.88742 0.88621 0.99284 1.24211 0.97693 1.00947 0.93802 0.83781 1.48154 1.51236 1.30127 1.04429 1.22472 0.94539 0.85794 0.99715 1.22617 0.97555 1.02867 0.92107 1.22379 1.00530 0.99143 0.97470 1.21657 0.78717 0.84229 0.86024 1.90699 1.39020 1.31357 1.84741 0.89683 0.92843 0.92137 0.93941 0.88814 0.74313 0.99488 0.92508 0.94151 0.91095 0.96687 0.86763 0.90919 0.88072 0.86747 0.87545 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.80 71.98 0.71 -0.71 16 2 C -0.13 -2.30 5.30 30.59 0.16 -2.14 16 3 C 0.15 2.72 2.67 44.24 0.12 2.84 16 4 H 0.16 1.38 8.07 -2.39 -0.02 1.36 16 5 C 0.50 14.55 6.85 87.66 0.60 15.15 16 6 O -0.57 -23.49 14.40 11.93 0.17 -23.32 16 7 N -0.68 -17.81 5.43 -435.71 -2.37 -20.17 16 8 C 0.11 3.95 6.19 46.44 0.29 4.24 16 9 H 0.10 4.22 7.40 -2.39 -0.02 4.20 16 10 C -0.19 -7.60 7.25 -8.30 -0.06 -7.66 16 11 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16 12 C 0.19 10.08 5.75 86.67 0.50 10.58 16 13 N -0.62 -33.14 3.37 -687.35 -2.32 -35.46 16 14 C -0.24 -13.86 10.35 84.03 0.87 -12.99 16 15 H 0.09 4.69 7.85 -2.91 -0.02 4.66 16 16 C -0.07 -3.92 5.40 84.86 0.46 -3.46 16 17 N -0.95 -59.88 10.87 21.65 0.24 -59.65 16 18 Si 0.99 46.50 29.56 68.60 2.03 48.52 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 22 C 0.15 6.24 7.03 86.54 0.61 6.84 16 23 C -0.15 -4.97 6.91 -9.89 -0.07 -5.04 16 24 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 25 N -0.61 -11.50 2.08 -798.19 -1.66 -13.16 16 26 C 0.10 0.81 7.30 86.83 0.63 1.45 16 27 C -0.11 -0.69 7.18 31.65 0.23 -0.47 16 28 C -0.16 -2.45 6.86 30.59 0.21 -2.24 16 29 C 0.50 13.48 6.69 87.90 0.59 14.06 16 30 O -0.58 -22.66 15.33 11.94 0.18 -22.47 16 31 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.05 0.59 7.75 -2.39 -0.02 0.57 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 34 H 0.04 1.14 6.67 -2.39 -0.02 1.12 16 35 H 0.09 1.29 7.43 -2.39 -0.02 1.27 16 36 H 0.42 7.32 8.19 -92.71 -0.76 6.56 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.06 3.37 6.52 -2.39 -0.02 3.36 16 39 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 46 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -90.51 377.92 2.32 -88.19 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.21 Total: 17.08 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 5.84 Total: 20.44 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -6.11 Total: -128.44 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: 0.35 Total: -45.79 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -90.51 2.32 -88.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115261601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.918 kcal (2) G-P(sol) polarization free energy of solvation -90.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds