Wall clock time and date at job start Fri Apr 10 2020 18:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47348 * 2 1 4 4 N 1.46503 * 109.47234 * 119.99916 * 2 1 3 5 5 C 1.34768 * 120.00130 * 275.00149 * 4 2 1 6 6 O 1.21283 * 120.00022 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00306 * 180.02562 * 5 4 2 8 8 C 1.53782 * 113.61809 * 180.02562 * 7 5 4 9 9 C 1.53781 * 87.08192 * 89.11184 * 8 7 5 10 10 C 1.53786 * 87.08172 * 25.43504 * 9 8 7 11 11 C 1.50703 * 109.47120 * 239.99787 * 2 1 3 12 12 O 1.21277 * 119.99999 * 239.99768 * 11 2 1 13 13 N 1.34778 * 119.99787 * 60.00175 * 11 2 1 14 14 C 1.46501 * 120.00088 * 179.97438 * 13 11 2 15 15 H 1.08997 * 115.51306 * 9.58052 * 14 13 11 16 16 C 1.53001 * 117.44352 * 224.24083 * 14 13 11 17 17 H 1.09002 * 119.53740 * 4.11681 * 16 14 13 18 18 C 1.57691 * 116.11040 * 161.63467 * 16 14 13 19 19 N 1.48151 * 104.67193 * 87.31035 * 18 16 14 20 20 C 1.36934 * 127.83841 * 139.77594 * 19 18 16 21 21 H 1.08000 * 120.00211 * 344.32913 * 20 19 18 22 22 C 1.38817 * 119.99948 * 164.33342 * 20 19 18 23 23 N 1.31619 * 119.99716 * 350.57001 * 22 20 19 24 24 Si 1.86803 * 119.99892 * 170.56743 * 22 20 19 25 25 H 1.48502 * 109.46605 * 60.00239 * 24 22 20 26 26 H 1.48498 * 109.46868 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47387 * 300.00377 * 24 22 20 28 28 C 1.48150 * 104.32163 * 319.77230 * 19 18 16 29 29 C 1.52992 * 117.44364 * 155.00071 * 14 13 11 30 30 H 1.08999 * 119.54231 * 355.87872 * 29 14 13 31 31 H 1.08996 * 109.47501 * 299.99991 * 1 2 3 32 32 H 1.09006 * 109.47502 * 60.00283 * 1 2 3 33 33 H 1.09009 * 109.47072 * 180.02562 * 1 2 3 34 34 H 0.97001 * 119.99710 * 95.00083 * 4 2 1 35 35 H 1.08993 * 112.90967 * 48.74631 * 7 5 4 36 36 H 1.08998 * 113.61349 * 334.56598 * 8 7 5 37 37 H 1.09001 * 113.61264 * 203.66554 * 8 7 5 38 38 H 1.09004 * 113.60735 * 139.98190 * 9 8 7 39 39 H 1.08994 * 113.61620 * 270.88486 * 9 8 7 40 40 H 1.08997 * 113.61067 * 89.11352 * 10 9 8 41 41 H 1.08993 * 113.61209 * 220.01893 * 10 9 8 42 42 H 0.97001 * 120.00190 * 359.97438 * 13 11 2 43 43 H 1.08999 * 110.92383 * 328.23422 * 18 16 14 44 44 H 1.08997 * 109.93615 * 205.88562 * 18 16 14 45 45 H 0.97003 * 119.99231 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.40669 * 280.79917 * 28 19 18 47 47 H 1.09002 * 110.40554 * 158.37593 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6499 -0.7285 3.5874 8 6 2.7388 0.1761 4.8279 9 6 1.2842 -0.2237 5.1266 10 6 1.5588 -1.5132 4.3349 11 6 2.0323 -0.7105 -1.2305 12 8 2.7296 -1.6965 -1.1192 13 7 1.7067 -0.2500 -2.4546 14 6 2.1955 -0.9403 -3.6508 15 1 2.6759 -1.9026 -3.4741 16 6 2.7452 -0.0769 -4.7880 17 1 2.8215 1.0023 -4.6548 18 6 3.6567 -0.8154 -5.8417 19 7 2.7096 -1.3509 -6.8472 20 6 2.8592 -1.3846 -8.2079 21 1 3.6140 -0.7759 -8.6834 22 6 2.0405 -2.2010 -8.9762 23 7 1.2509 -3.0774 -8.3925 24 14 2.0597 -2.0558 -10.8385 25 1 3.4268 -2.3416 -11.3431 26 1 1.1035 -3.0314 -11.4209 27 1 1.6646 -0.6795 -11.2318 28 6 1.5639 -1.8419 -6.0464 29 6 1.3820 -0.7837 -4.9370 30 1 0.4427 -0.2312 -4.9150 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6318 1.1526 35 1 3.5548 -1.3074 3.4031 36 1 2.8611 1.2327 4.5899 37 1 3.4505 -0.1758 5.5747 38 1 1.0870 -0.3947 6.1849 39 1 0.5472 0.4280 4.6575 40 1 1.9479 -2.3268 4.9471 41 1 0.7286 -1.8203 3.6990 42 1 1.1487 0.5385 -2.5436 43 1 4.2134 -1.6273 -5.3737 44 1 4.3406 -0.1041 -6.3049 45 1 0.6786 -3.6476 -8.9294 46 1 1.7938 -2.8141 -5.6104 47 1 0.6675 -1.9036 -6.6636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115353979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:27 Heat of formation + Delta-G solvation = 7.636330 kcal Electronic energy + Delta-G solvation = -26641.630451 eV Core-core repulsion = 22826.878567 eV Total energy + Delta-G solvation = -3814.751884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95528 -39.94751 -38.48341 -37.50270 -35.16040 -34.62436 -32.84663 -31.17790 -30.05401 -27.06938 -26.89317 -26.01593 -25.82427 -24.61082 -22.27419 -21.36882 -20.59837 -20.23541 -19.65442 -19.33725 -17.62764 -17.20572 -16.81900 -16.54446 -15.96300 -15.75399 -15.34056 -15.07978 -14.70511 -14.47281 -13.98415 -13.63743 -13.59272 -13.36137 -12.89595 -12.82983 -12.77027 -12.66425 -12.44619 -12.27608 -11.94133 -11.56759 -11.52789 -11.35890 -11.02561 -10.84160 -10.78995 -10.76731 -10.42703 -10.27765 -10.21763 -10.10010 -9.97455 -9.76716 -9.44786 -9.26139 -8.78283 -8.42093 -6.91290 -5.83494 -3.17798 2.26879 2.41968 2.56643 3.17019 3.37041 3.41446 3.42629 4.13219 4.21074 4.25373 4.28458 4.41429 4.45393 4.47529 4.72621 4.79850 4.87716 5.10056 5.23166 5.25439 5.28270 5.31691 5.34635 5.38948 5.44603 5.52699 5.52808 5.68820 5.69246 5.73226 5.79090 5.81591 6.00126 6.01923 6.09072 6.15673 6.46355 6.64611 6.69557 6.83795 7.20682 7.29352 7.39961 7.48340 7.67368 7.91720 8.05988 8.16346 9.07046 9.69842 10.46513 11.30925 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.043728 B = 0.001973 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.166843 B =14188.237575 C =14238.484550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.114 0.886 4 N -0.710 5.710 5 C 0.537 3.463 6 O -0.539 6.539 7 C -0.142 4.142 8 C -0.121 4.121 9 C -0.142 4.142 10 C -0.125 4.125 11 C 0.513 3.487 12 O -0.535 6.535 13 N -0.690 5.690 14 C 0.092 3.908 15 H 0.132 0.868 16 C -0.185 4.185 17 H 0.107 0.893 18 C 0.158 3.842 19 N -0.593 5.593 20 C -0.229 4.229 21 H 0.077 0.923 22 C -0.005 4.005 23 N -0.915 5.915 24 Si 0.914 3.086 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.284 1.284 28 C 0.186 3.814 29 C -0.178 4.178 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.401 0.599 43 H 0.031 0.969 44 H 0.051 0.949 45 H 0.255 0.745 46 H 0.026 0.974 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.622 5.616 24.808 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 H 0.132 0.868 4 N -0.363 5.363 5 C 0.323 3.677 6 O -0.416 6.416 7 C -0.163 4.163 8 C -0.158 4.158 9 C -0.179 4.179 10 C -0.162 4.162 11 C 0.298 3.702 12 O -0.412 6.412 13 N -0.339 5.339 14 C -0.014 4.014 15 H 0.150 0.850 16 C -0.206 4.206 17 H 0.125 0.875 18 C 0.030 3.970 19 N -0.316 5.316 20 C -0.357 4.357 21 H 0.095 0.905 22 C -0.202 4.202 23 N -0.561 5.561 24 Si 0.744 3.256 25 H -0.209 1.209 26 H -0.215 1.215 27 H -0.211 1.211 28 C 0.059 3.941 29 C -0.200 4.200 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.235 0.765 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.409 5.608 24.654 25.323 hybrid contribution -0.222 0.068 -1.124 1.147 sum -1.631 5.675 23.531 24.260 Atomic orbital electron populations 1.22138 0.92654 1.03383 1.03630 1.20760 0.95779 0.98102 0.83683 0.86795 1.45732 1.67305 1.14974 1.08305 1.20089 0.76883 0.86874 0.83826 1.90688 1.49980 1.15893 1.85000 1.22424 1.01019 0.99774 0.93130 1.22759 0.97309 1.00681 0.95099 1.22898 0.97508 0.97106 1.00433 1.22838 0.97600 0.97261 0.98550 1.20477 0.80318 0.84784 0.84599 1.90707 1.37786 1.26232 1.86428 1.45327 1.52331 1.31376 1.04830 1.21935 1.02262 0.97689 0.79510 0.84996 1.25110 0.98784 0.97940 0.98778 0.87469 1.21695 0.91365 0.95014 0.88886 1.45116 1.15050 1.70056 1.01332 1.18943 1.17440 1.19708 0.79575 0.90543 1.24910 1.00215 0.96726 0.98380 1.69889 1.28685 1.23358 1.34155 0.86174 0.77442 0.77284 0.84702 1.20938 1.21523 1.21069 1.21068 0.93759 0.90845 0.88384 1.24648 0.94805 1.04313 0.96191 0.88004 0.90811 0.90785 0.91519 0.75131 0.87926 0.89960 0.89404 0.91219 0.89747 0.88925 0.91018 0.76486 0.95174 0.93079 0.93444 0.95563 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.38 37.15 0.35 -0.99 16 2 C 0.13 1.27 2.98 -69.08 -0.21 1.06 16 3 H 0.11 1.17 7.58 -51.93 -0.39 0.77 16 4 N -0.71 -7.03 4.95 -54.93 -0.27 -7.30 16 5 C 0.54 5.54 7.05 -10.99 -0.08 5.46 16 6 O -0.54 -7.11 15.41 5.55 0.09 -7.03 16 7 C -0.14 -1.08 4.34 -90.96 -0.40 -1.47 16 8 C -0.12 -0.87 7.45 -25.92 -0.19 -1.06 16 9 C -0.14 -0.97 7.73 -25.92 -0.20 -1.17 16 10 C -0.12 -0.77 7.66 -25.91 -0.20 -0.97 16 11 C 0.51 6.57 7.22 -10.98 -0.08 6.49 16 12 O -0.54 -8.68 15.40 5.56 0.09 -8.59 16 13 N -0.69 -8.56 5.46 -53.81 -0.29 -8.85 16 14 C 0.09 1.47 5.92 -67.93 -0.40 1.07 16 15 H 0.13 2.43 7.40 -51.93 -0.38 2.04 16 16 C -0.18 -3.18 7.34 -87.38 -0.64 -3.82 16 17 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 18 C 0.16 3.28 7.10 -0.57 0.00 3.27 16 19 N -0.59 -14.97 3.38 -166.72 -0.56 -15.53 16 20 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 21 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 22 C -0.01 -0.14 5.40 -17.43 -0.09 -0.23 16 23 N -0.92 -26.46 10.88 55.49 0.60 -25.86 16 24 Si 0.91 21.68 29.56 -169.99 -5.03 16.65 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.19 4.36 5.70 -2.41 -0.01 4.35 16 29 C -0.18 -3.23 6.98 -89.22 -0.62 -3.85 16 30 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.51 7.56 -51.93 -0.39 0.12 16 33 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.41 3.89 7.79 -40.82 -0.32 3.57 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.73 7.43 -51.93 -0.39 0.35 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 42 H 0.40 3.85 8.24 -40.82 -0.34 3.51 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.09 2.38 6.53 -51.93 -0.34 2.04 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -32.60 383.40 -10.12 -42.72 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.59 Total: 6.32 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -2.94 Total: 1.69 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.53 Total: -57.55 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.17 Total: -15.62 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.60 -10.12 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115353979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.360 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds