Wall clock time and date at job start Fri Apr 10 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47348 * 2 1 4 4 N 1.46503 * 109.47234 * 119.99916 * 2 1 3 5 5 C 1.34768 * 120.00130 * 275.00149 * 4 2 1 6 6 O 1.21283 * 120.00022 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00306 * 180.02562 * 5 4 2 8 8 C 1.53782 * 113.61809 * 180.02562 * 7 5 4 9 9 C 1.53781 * 87.08192 * 89.11184 * 8 7 5 10 10 C 1.53786 * 87.08172 * 25.43504 * 9 8 7 11 11 C 1.50703 * 109.47120 * 239.99787 * 2 1 3 12 12 O 1.21277 * 119.99999 * 239.99768 * 11 2 1 13 13 N 1.34778 * 119.99787 * 60.00175 * 11 2 1 14 14 C 1.46501 * 120.00088 * 179.97438 * 13 11 2 15 15 H 1.08997 * 115.51306 * 9.58052 * 14 13 11 16 16 C 1.53001 * 117.44352 * 224.24083 * 14 13 11 17 17 H 1.09002 * 119.53740 * 4.11681 * 16 14 13 18 18 C 1.57691 * 116.11040 * 161.63467 * 16 14 13 19 19 N 1.48151 * 104.67193 * 87.31035 * 18 16 14 20 20 C 1.36934 * 127.83841 * 139.77594 * 19 18 16 21 21 H 1.08000 * 120.00211 * 344.32913 * 20 19 18 22 22 C 1.38817 * 119.99948 * 164.33342 * 20 19 18 23 23 N 1.31619 * 119.99716 * 350.57001 * 22 20 19 24 24 Si 1.86803 * 119.99892 * 170.56743 * 22 20 19 25 25 H 1.48502 * 109.46605 * 60.00239 * 24 22 20 26 26 H 1.48498 * 109.46868 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47387 * 300.00377 * 24 22 20 28 28 C 1.48150 * 104.32163 * 319.77230 * 19 18 16 29 29 C 1.52992 * 117.44364 * 155.00071 * 14 13 11 30 30 H 1.08999 * 119.54231 * 355.87872 * 29 14 13 31 31 H 1.08996 * 109.47501 * 299.99991 * 1 2 3 32 32 H 1.09006 * 109.47502 * 60.00283 * 1 2 3 33 33 H 1.09009 * 109.47072 * 180.02562 * 1 2 3 34 34 H 0.97001 * 119.99710 * 95.00083 * 4 2 1 35 35 H 1.08993 * 112.90967 * 48.74631 * 7 5 4 36 36 H 1.08998 * 113.61349 * 334.56598 * 8 7 5 37 37 H 1.09001 * 113.61264 * 203.66554 * 8 7 5 38 38 H 1.09004 * 113.60735 * 139.98190 * 9 8 7 39 39 H 1.08994 * 113.61620 * 270.88486 * 9 8 7 40 40 H 1.08997 * 113.61067 * 89.11352 * 10 9 8 41 41 H 1.08993 * 113.61209 * 220.01893 * 10 9 8 42 42 H 0.97001 * 120.00190 * 359.97438 * 13 11 2 43 43 H 1.08999 * 110.92383 * 328.23422 * 18 16 14 44 44 H 1.08997 * 109.93615 * 205.88562 * 18 16 14 45 45 H 0.97003 * 119.99231 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.40669 * 280.79917 * 28 19 18 47 47 H 1.09002 * 110.40554 * 158.37593 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6499 -0.7285 3.5874 8 6 2.7388 0.1761 4.8279 9 6 1.2842 -0.2237 5.1266 10 6 1.5588 -1.5132 4.3349 11 6 2.0323 -0.7105 -1.2305 12 8 2.7296 -1.6965 -1.1192 13 7 1.7067 -0.2500 -2.4546 14 6 2.1955 -0.9403 -3.6508 15 1 2.6759 -1.9026 -3.4741 16 6 2.7452 -0.0769 -4.7880 17 1 2.8215 1.0023 -4.6548 18 6 3.6567 -0.8154 -5.8417 19 7 2.7096 -1.3509 -6.8472 20 6 2.8592 -1.3846 -8.2079 21 1 3.6140 -0.7759 -8.6834 22 6 2.0405 -2.2010 -8.9762 23 7 1.2509 -3.0774 -8.3925 24 14 2.0597 -2.0558 -10.8385 25 1 3.4268 -2.3416 -11.3431 26 1 1.1035 -3.0314 -11.4209 27 1 1.6646 -0.6795 -11.2318 28 6 1.5639 -1.8419 -6.0464 29 6 1.3820 -0.7837 -4.9370 30 1 0.4427 -0.2312 -4.9150 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6318 1.1526 35 1 3.5548 -1.3074 3.4031 36 1 2.8611 1.2327 4.5899 37 1 3.4505 -0.1758 5.5747 38 1 1.0870 -0.3947 6.1849 39 1 0.5472 0.4280 4.6575 40 1 1.9479 -2.3268 4.9471 41 1 0.7286 -1.8203 3.6990 42 1 1.1487 0.5385 -2.5436 43 1 4.2134 -1.6273 -5.3737 44 1 4.3406 -0.1041 -6.3049 45 1 0.6786 -3.6476 -8.9294 46 1 1.7938 -2.8141 -5.6104 47 1 0.6675 -1.9036 -6.6636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115353979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:26 Heat of formation + Delta-G solvation = -14.352631 kcal Electronic energy + Delta-G solvation = -26642.583964 eV Core-core repulsion = 22826.878567 eV Total energy + Delta-G solvation = -3815.705397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80109 -41.01571 -39.87384 -38.25233 -36.20059 -36.01032 -34.44307 -32.50984 -31.40924 -28.80660 -27.65002 -27.51607 -26.52072 -25.60790 -23.57527 -22.44771 -22.01449 -21.32725 -20.92061 -20.43099 -18.86840 -18.40478 -18.10840 -17.53341 -16.96924 -16.71824 -16.49469 -16.27965 -15.90024 -15.47785 -15.30107 -15.03408 -14.79063 -14.63687 -14.31030 -13.84066 -13.72210 -13.37189 -13.34408 -13.27292 -13.20643 -13.03575 -12.88258 -12.69231 -12.67248 -12.16123 -12.01788 -11.93763 -11.89504 -11.69559 -11.32051 -11.31451 -11.11258 -10.89704 -10.81984 -10.70107 -10.27653 -9.76851 -8.93416 -7.92813 -5.29432 1.33873 1.46198 1.47792 1.50370 1.56724 1.65682 2.24912 2.48310 2.83761 3.25887 3.38356 3.56141 3.62032 3.67197 3.74811 3.80140 3.93118 3.94949 3.97778 4.05171 4.07059 4.27674 4.29501 4.50617 4.60614 4.70128 4.73882 4.79266 4.83791 4.86608 4.90195 4.97542 5.04590 5.11578 5.13820 5.19162 5.25799 5.27903 5.38493 5.43154 5.48686 5.51101 5.63877 6.15786 6.36742 6.42836 6.99496 7.03575 7.13285 7.66353 8.44632 9.20954 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.043728 B = 0.001973 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.166843 B =14188.237575 C =14238.484550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.133 3.867 3 H 0.118 0.882 4 N -0.709 5.709 5 C 0.534 3.466 6 O -0.571 6.571 7 C -0.147 4.147 8 C -0.121 4.121 9 C -0.144 4.144 10 C -0.115 4.115 11 C 0.517 3.483 12 O -0.570 6.570 13 N -0.676 5.676 14 C 0.116 3.884 15 H 0.108 0.892 16 C -0.167 4.167 17 H 0.140 0.860 18 C 0.149 3.851 19 N -0.617 5.617 20 C -0.242 4.242 21 H 0.082 0.918 22 C -0.062 4.062 23 N -0.947 5.947 24 Si 0.982 3.018 25 H -0.276 1.276 26 H -0.294 1.294 27 H -0.275 1.275 28 C 0.189 3.811 29 C -0.177 4.177 30 H 0.127 0.873 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.414 0.586 35 H 0.118 0.882 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.068 0.932 42 H 0.419 0.581 43 H 0.022 0.978 44 H 0.060 0.940 45 H 0.251 0.749 46 H -0.003 1.003 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 6.849 26.115 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.136 0.864 4 N -0.362 5.362 5 C 0.322 3.678 6 O -0.451 6.451 7 C -0.168 4.168 8 C -0.158 4.158 9 C -0.182 4.182 10 C -0.152 4.152 11 C 0.303 3.697 12 O -0.448 6.448 13 N -0.326 5.326 14 C 0.008 3.992 15 H 0.126 0.874 16 C -0.188 4.188 17 H 0.158 0.842 18 C 0.023 3.977 19 N -0.341 5.341 20 C -0.371 4.371 21 H 0.100 0.900 22 C -0.256 4.256 23 N -0.595 5.595 24 Si 0.809 3.191 25 H -0.202 1.202 26 H -0.220 1.220 27 H -0.201 1.201 28 C 0.063 3.937 29 C -0.198 4.198 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.252 0.748 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.257 0.743 43 H 0.040 0.960 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.015 0.985 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.387 6.875 25.989 26.919 hybrid contribution -0.161 -0.348 -1.469 1.518 sum -1.548 6.527 24.520 25.421 Atomic orbital electron populations 1.22120 0.91002 1.03602 1.04501 1.20748 0.96871 0.97632 0.82349 0.86434 1.45791 1.67060 1.15084 1.08232 1.20584 0.76143 0.86557 0.84478 1.90671 1.51512 1.17344 1.85527 1.22497 1.02099 1.00143 0.92038 1.22814 0.98143 0.99374 0.95488 1.22878 0.96763 0.97193 1.01342 1.22861 0.96879 0.97332 0.98169 1.20926 0.79401 0.84181 0.85146 1.90703 1.39326 1.27891 1.86909 1.45098 1.52349 1.31633 1.03515 1.21439 1.00605 0.96915 0.80193 0.87383 1.25013 0.96500 0.99246 0.98066 0.84219 1.21826 0.91627 0.95176 0.89106 1.45413 1.16721 1.70409 1.01536 1.19342 1.17270 1.19406 0.81080 0.90027 1.25766 1.00270 0.96705 1.02865 1.70089 1.29585 1.24317 1.35461 0.85112 0.77403 0.77288 0.79263 1.20171 1.21992 1.20106 1.20804 0.92055 0.91470 0.89368 1.24319 0.96502 1.03049 0.95964 0.85476 0.90992 0.88886 0.91605 0.74802 0.86385 0.92174 0.87165 0.89667 0.91792 0.86665 0.91341 0.74284 0.96019 0.92106 0.94046 0.98513 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.38 71.98 0.68 -1.57 16 2 C 0.13 2.45 2.98 44.24 0.13 2.58 16 3 H 0.12 2.17 7.58 -2.39 -0.02 2.15 16 4 N -0.71 -13.17 4.95 -446.11 -2.21 -15.38 16 5 C 0.53 10.52 7.05 87.66 0.62 11.14 16 6 O -0.57 -14.83 15.41 -3.04 -0.05 -14.88 16 7 C -0.15 -1.99 4.34 -11.01 -0.05 -2.04 16 8 C -0.12 -1.57 7.45 31.12 0.23 -1.34 16 9 C -0.14 -1.78 7.73 31.12 0.24 -1.54 16 10 C -0.11 -1.17 7.66 31.12 0.24 -0.93 16 11 C 0.52 12.32 7.22 87.66 0.63 12.95 16 12 O -0.57 -17.98 15.40 -3.02 -0.05 -18.02 16 13 N -0.68 -15.06 5.46 -442.54 -2.41 -17.47 16 14 C 0.12 3.54 5.92 44.99 0.27 3.81 16 15 H 0.11 3.97 7.40 -2.39 -0.02 3.96 16 16 C -0.17 -5.40 7.34 -8.70 -0.06 -5.47 16 17 H 0.14 3.70 8.14 -2.39 -0.02 3.68 16 18 C 0.15 6.13 7.10 87.72 0.62 6.75 16 19 N -0.62 -31.66 3.38 -681.39 -2.30 -33.97 16 20 C -0.24 -13.49 10.35 84.04 0.87 -12.62 16 21 H 0.08 4.33 7.85 -2.91 -0.02 4.30 16 22 C -0.06 -3.51 5.40 84.86 0.46 -3.05 16 23 N -0.95 -56.57 10.88 21.65 0.24 -56.34 16 24 Si 0.98 45.04 29.56 68.60 2.03 47.07 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 C 0.19 9.16 5.70 86.53 0.49 9.65 16 29 C -0.18 -6.21 6.98 -9.89 -0.07 -6.28 16 30 H 0.13 3.84 8.14 -2.39 -0.02 3.82 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.00 7.56 -2.38 -0.02 0.98 16 33 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.41 7.36 7.79 -92.71 -0.72 6.64 16 35 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.06 7.43 -2.39 -0.02 1.05 16 37 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.06 1.05 8.07 -2.39 -0.02 1.03 16 40 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 42 H 0.42 6.51 8.24 -92.71 -0.76 5.74 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.06 3.20 6.53 -2.39 -0.02 3.19 16 Total: -1.00 -73.05 383.40 0.04 -73.01 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.50 Total: 23.95 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.30 Total: 12.04 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -6.69 Total: -123.16 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.09 Total: -32.90 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.05 0.04 -73.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115353979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.654 kcal (2) G-P(sol) polarization free energy of solvation -73.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds