Wall clock time and date at job start Fri Apr 10 2020 18:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46884 * 127.90068 * 3 2 1 5 5 C 1.52999 * 109.46862 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47136 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99906 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00157 * 180.02562 * 6 5 4 9 9 C 1.47745 * 121.64855 * 359.71016 * 8 6 5 10 10 C 1.53601 * 108.47523 * 87.80769 * 9 8 6 11 11 C 1.50704 * 109.49991 * 55.01872 * 10 9 8 12 12 O 1.21274 * 120.24337 * 65.67619 * 11 10 9 13 13 N 1.35514 * 119.51345 * 245.66006 * 11 10 9 14 14 C 1.47111 * 118.10163 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.17007 * 259.42996 * 14 13 11 16 16 N 1.47765 * 108.81840 * 57.75782 * 15 14 13 17 17 C 1.36939 * 121.65415 * 83.02681 * 16 15 14 18 18 H 1.07998 * 119.99420 * 330.88751 * 17 16 15 19 19 C 1.38812 * 120.00284 * 150.88934 * 17 16 15 20 20 N 1.31621 * 119.99723 * 345.34277 * 19 17 16 21 21 Si 1.86791 * 119.99925 * 165.34446 * 19 17 16 22 22 H 1.48501 * 109.47544 * 90.00065 * 21 19 17 23 23 H 1.48505 * 109.47406 * 210.00071 * 21 19 17 24 24 H 1.48503 * 109.47282 * 329.99775 * 21 19 17 25 25 C 1.47749 * 116.70195 * 263.00240 * 16 15 14 26 26 C 1.47764 * 121.65438 * 179.97438 * 8 6 5 27 27 H 4.44642 * 5.63302 * 180.02562 * 4 1 2 28 28 H 1.08995 * 109.47540 * 247.90330 * 3 2 1 29 29 H 1.09005 * 109.47066 * 7.90618 * 3 2 1 30 30 H 1.08998 * 109.47558 * 299.99743 * 4 3 2 31 31 H 1.09000 * 109.47241 * 60.00205 * 4 3 2 32 32 H 1.09004 * 109.46984 * 300.00124 * 5 4 3 33 33 H 1.08993 * 109.47532 * 60.00130 * 5 4 3 34 34 H 1.09001 * 109.57893 * 207.43103 * 9 8 6 35 35 H 1.08993 * 109.58629 * 327.84702 * 9 8 6 36 36 H 1.08997 * 109.49784 * 294.97103 * 10 9 8 37 37 H 1.09003 * 109.40287 * 174.99781 * 10 9 8 38 38 H 0.96991 * 120.95169 * 359.93597 * 13 11 10 39 39 H 1.08998 * 109.52225 * 139.52566 * 14 13 11 40 40 H 1.08998 * 109.52584 * 19.33810 * 14 13 11 41 41 H 1.08991 * 109.58287 * 297.95154 * 15 14 13 42 42 H 1.09006 * 109.68201 * 177.61795 * 15 14 13 43 43 H 0.97002 * 119.99829 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.57897 * 14.87436 * 25 16 15 45 45 H 1.09005 * 109.57699 * 254.47667 * 25 16 15 46 46 H 1.09011 * 109.58383 * 69.83616 * 26 8 6 47 47 H 1.08993 * 109.59032 * 190.11586 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.8870 -1.1383 5 6 4.6856 0.8872 -1.1386 6 6 5.1875 1.7607 -2.2594 7 8 4.3991 2.3270 -2.9865 8 7 6.5126 1.9119 -2.4543 9 6 7.5049 1.2435 -1.5875 10 6 7.7912 -0.1521 -2.1617 11 6 8.2206 -0.0256 -3.6007 12 8 9.2634 0.5268 -3.8807 13 7 7.4333 -0.5339 -4.5795 14 6 7.8821 -0.3926 -5.9734 15 6 7.1336 0.7707 -6.6267 16 7 7.3834 1.9984 -5.8432 17 6 8.5128 2.7507 -6.0267 18 1 9.4265 2.2806 -6.3589 19 6 8.4831 4.1174 -5.7856 20 7 7.3295 4.7394 -5.6644 21 14 10.0804 5.0737 -5.6332 22 1 10.4899 5.5701 -6.9715 23 1 9.8822 6.2258 -4.7173 24 1 11.1392 4.1856 -5.0894 25 6 6.3540 2.3744 -4.8522 26 6 7.0447 2.7588 -3.5419 27 1 -1.0501 0.0000 0.0003 28 1 3.0093 0.3874 0.9521 29 1 3.0098 -1.0171 -0.1414 30 1 2.7925 0.5003 -2.0904 31 1 2.7918 1.9048 -0.9970 32 1 5.0491 1.2737 -0.1865 33 1 5.0490 -0.1306 -1.2802 34 1 8.4254 1.8270 -1.5686 35 1 7.1060 1.1538 -0.5772 36 1 6.8893 -0.7614 -2.1037 37 1 8.5865 -0.6247 -1.5853 38 1 6.5979 -0.9787 -4.3672 39 1 7.6723 -1.3128 -6.5186 40 1 8.9535 -0.1930 -5.9926 41 1 6.0650 0.5565 -6.6393 42 1 7.4903 0.9099 -7.6473 43 1 7.3088 5.6944 -5.4956 44 1 5.6885 1.5290 -4.6780 45 1 5.7801 3.2226 -5.2256 46 1 6.8465 3.8073 -3.3189 47 1 8.1193 2.6020 -3.6348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131353927.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:36 Heat of formation + Delta-G solvation = 12.807737 kcal Electronic energy + Delta-G solvation = -29352.149948 eV Core-core repulsion = 25537.622312 eV Total energy + Delta-G solvation = -3814.527635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.92001 -38.71327 -36.03070 -35.63126 -35.25129 -33.73789 -32.34543 -31.30693 -30.39790 -29.39709 -27.95173 -26.29654 -24.54547 -23.64221 -22.79188 -21.34879 -20.16367 -19.76474 -18.73129 -18.04171 -17.04188 -16.48879 -16.30500 -15.95977 -15.46304 -15.12248 -14.89961 -14.54327 -14.20151 -13.99994 -13.58435 -13.35334 -13.27700 -13.19761 -12.89830 -12.73838 -12.57649 -12.23937 -11.96685 -11.72863 -11.50789 -11.46125 -11.22668 -11.09152 -10.94822 -10.75237 -10.45354 -10.33601 -10.23730 -10.22257 -9.95375 -9.80883 -9.66208 -9.13530 -9.11017 -8.69147 -8.26657 -8.04479 -6.46093 -5.55113 -3.08542 2.67026 2.70872 3.08244 3.25500 3.45292 3.50126 3.52994 3.59023 3.85941 4.22554 4.61659 4.68544 4.90215 4.96751 5.00766 5.08752 5.29557 5.33879 5.39940 5.45508 5.48936 5.52828 5.56829 5.63292 5.71158 5.88171 5.90847 6.05437 6.06262 6.15788 6.23901 6.25262 6.54654 6.62496 6.63843 6.80131 6.95576 7.04657 7.16251 7.48980 7.53990 7.82303 7.99053 8.10657 8.14887 8.51519 8.71269 8.92903 9.34274 9.94935 10.56988 11.43851 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.004225 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.230299 B = 6626.333912 C = 7157.446978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.182 4.182 3 C -0.014 4.014 4 C -0.099 4.099 5 C -0.141 4.141 6 C 0.508 3.492 7 O -0.531 6.531 8 N -0.617 5.617 9 C 0.118 3.882 10 C -0.159 4.159 11 C 0.520 3.480 12 O -0.517 6.517 13 N -0.722 5.722 14 C 0.089 3.911 15 C 0.126 3.874 16 N -0.587 5.587 17 C -0.224 4.224 18 H 0.062 0.938 19 C 0.000 4.000 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.174 3.826 26 C 0.113 3.887 27 H 0.215 0.785 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.390 0.610 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.051 0.949 43 H 0.250 0.750 44 H 0.026 0.974 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 -13.706 12.170 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.182 4.182 3 C -0.050 4.050 4 C -0.137 4.137 5 C -0.181 4.181 6 C 0.295 3.705 7 O -0.407 6.407 8 N -0.352 5.352 9 C -0.007 4.007 10 C -0.201 4.201 11 C 0.305 3.695 12 O -0.391 6.391 13 N -0.374 5.374 14 C -0.038 4.038 15 C -0.002 4.002 16 N -0.310 5.310 17 C -0.354 4.354 18 H 0.080 0.920 19 C -0.198 4.198 20 N -0.543 5.543 21 Si 0.722 3.278 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.049 3.951 26 C -0.008 4.008 27 H 0.232 0.768 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.223 0.777 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.742 -12.769 11.575 18.166 hybrid contribution 0.278 0.366 0.348 0.576 sum -5.464 -12.403 11.923 18.051 Atomic orbital electron populations 1.24892 0.96000 1.01292 1.01168 1.23156 0.94631 1.00187 1.00222 1.18794 0.84764 1.01318 1.00150 1.21272 0.93357 1.00743 0.98302 1.21741 0.96972 1.00636 0.98732 1.20358 0.82026 0.82390 0.85718 1.90741 1.54543 1.48075 1.47365 1.49185 1.04691 1.48603 1.32701 1.21810 0.93944 0.91719 0.93218 1.22313 1.02798 0.99477 0.95529 1.20270 0.84352 0.78045 0.86844 1.90747 1.24140 1.40628 1.83586 1.46015 1.24126 1.60088 1.07169 1.22300 1.02084 0.98238 0.81157 1.21443 0.96385 0.87761 0.94597 1.44510 1.22394 1.24604 1.39488 1.18855 0.87853 0.87986 1.40752 0.92047 1.25028 0.95979 0.96329 1.02445 1.70039 1.22728 1.08389 1.53166 0.86445 0.84229 0.79649 0.77515 1.21645 1.21840 1.20392 1.21160 0.89766 0.97398 0.86750 1.22643 1.00539 0.92211 0.85391 0.76787 0.89611 0.89593 0.90734 0.90761 0.89235 0.89313 0.89272 0.90189 0.90733 0.88286 0.77736 0.92945 0.89657 0.94335 0.93065 0.93981 0.95528 0.92021 0.92578 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.12 19.25 29.55 0.57 -1.56 16 2 C -0.18 -1.94 13.34 -37.12 -0.50 -2.43 16 3 C -0.01 -0.12 5.70 -29.52 -0.17 -0.28 16 4 C -0.10 -1.08 4.46 -26.73 -0.12 -1.20 16 5 C -0.14 -1.47 4.38 -27.88 -0.12 -1.59 16 6 C 0.51 8.30 7.05 -10.98 -0.08 8.22 16 7 O -0.53 -11.16 14.35 5.56 0.08 -11.08 16 8 N -0.62 -10.46 2.42 -171.27 -0.41 -10.88 16 9 C 0.12 1.51 5.55 -3.05 -0.02 1.49 16 10 C -0.16 -1.87 6.20 -27.57 -0.17 -2.04 16 11 C 0.52 8.69 4.75 -10.65 -0.05 8.64 16 12 O -0.52 -11.15 15.08 5.56 0.08 -11.06 16 13 N -0.72 -11.10 4.70 -59.69 -0.28 -11.38 16 14 C 0.09 1.50 6.58 -3.71 -0.02 1.48 16 15 C 0.13 2.55 6.09 -3.35 -0.02 2.53 16 16 N -0.59 -14.36 2.27 -171.19 -0.39 -14.75 16 17 C -0.22 -6.13 8.37 -15.06 -0.13 -6.25 16 18 H 0.06 1.74 7.87 -52.49 -0.41 1.32 16 19 C 0.00 0.01 4.33 -17.43 -0.08 -0.06 16 20 N -0.90 -26.28 10.35 55.49 0.57 -25.71 16 21 Si 0.89 22.48 29.58 -169.99 -5.03 17.45 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.17 4.23 3.62 -3.34 -0.01 4.22 16 26 C 0.11 2.56 3.86 -3.34 -0.01 2.55 16 27 H 0.22 1.38 7.80 -54.09 -0.42 0.96 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 31 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 32 H 0.09 0.75 7.52 -51.93 -0.39 0.36 16 33 H 0.09 0.71 7.06 -51.93 -0.37 0.34 16 34 H 0.09 1.29 7.80 -51.93 -0.41 0.88 16 35 H 0.08 0.71 6.77 -51.93 -0.35 0.36 16 36 H 0.07 0.67 6.85 -51.93 -0.36 0.32 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.39 4.93 8.71 -40.82 -0.36 4.57 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.70 7.01 -51.93 -0.36 1.33 16 41 H 0.04 0.74 7.76 -51.93 -0.40 0.34 16 42 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.03 0.61 5.89 -51.93 -0.31 0.31 16 45 H 0.06 1.80 6.73 -51.93 -0.35 1.45 16 46 H 0.06 1.45 7.73 -51.92 -0.40 1.04 16 47 H 0.10 2.56 4.66 -51.93 -0.24 2.31 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -35.14 368.96 -7.95 -43.09 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.21 Total: 5.06 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: -0.92 Total: 13.70 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.51 Total: -62.72 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.16 Total: -22.14 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.14 -7.95 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131353927.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.895 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds