Wall clock time and date at job start Fri Apr 10 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47405 * 2 1 4 4 C 1.47201 * 109.47062 * 119.99921 * 2 1 3 5 5 C 2.64598 * 109.46942 * 119.99989 * 2 1 3 6 6 C 4.07802 * 109.46963 * 119.99945 * 2 1 3 7 7 O 1.21611 * 119.99974 * 256.51354 * 6 5 4 8 8 N 1.34775 * 119.99781 * 76.51088 * 6 5 4 9 9 C 1.47744 * 121.65627 * 359.97438 * 8 6 5 10 10 C 1.53010 * 108.78881 * 271.26582 * 9 8 6 11 11 C 1.50702 * 109.43993 * 304.75646 * 10 9 8 12 12 O 1.21286 * 120.23868 * 296.12762 * 11 10 9 13 13 N 1.35504 * 119.51892 * 116.10726 * 11 10 9 14 14 C 1.47127 * 118.10522 * 180.29911 * 13 11 10 15 15 C 1.53012 * 109.09764 * 99.92388 * 14 13 11 16 16 N 1.47768 * 108.78952 * 301.48466 * 15 14 13 17 17 C 1.36946 * 121.63939 * 276.62582 * 16 15 14 18 18 H 1.07997 * 120.00077 * 29.14540 * 17 16 15 19 19 C 1.38808 * 119.99901 * 209.14406 * 17 16 15 20 20 N 1.31626 * 120.00247 * 12.64847 * 19 17 16 21 21 Si 1.86802 * 120.00259 * 192.64560 * 19 17 16 22 22 H 1.48504 * 109.46648 * 59.99945 * 21 19 17 23 23 H 1.48497 * 109.47517 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46877 * 300.00706 * 21 19 17 25 25 C 1.47734 * 116.71763 * 96.90347 * 16 15 14 26 26 C 1.47777 * 121.65004 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.46858 * 300.00008 * 1 2 3 28 28 H 1.08993 * 109.46718 * 60.00278 * 1 2 3 29 29 H 1.09001 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47146 * 239.99571 * 2 1 3 31 31 H 1.08996 * 109.46882 * 59.99265 * 3 2 1 32 32 H 1.08996 * 109.46995 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46389 * 299.99858 * 3 2 1 34 34 H 1.08998 * 109.58775 * 151.46965 * 9 8 6 35 35 H 1.09003 * 109.57935 * 31.05224 * 9 8 6 36 36 H 1.09007 * 109.47902 * 184.76651 * 10 9 8 37 37 H 1.08999 * 109.48315 * 64.75484 * 10 9 8 38 38 H 0.96995 * 120.94635 * 0.32011 * 13 11 10 39 39 H 1.08998 * 109.53687 * 340.03961 * 14 13 11 40 40 H 1.09001 * 109.53444 * 219.81288 * 14 13 11 41 41 H 1.08997 * 109.58707 * 181.68397 * 15 14 13 42 42 H 1.08997 * 109.69545 * 61.33814 * 15 14 13 43 43 H 0.96996 * 120.00302 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.57773 * 345.18213 * 25 16 15 45 45 H 1.08996 * 109.58396 * 105.57903 * 25 16 15 46 46 H 1.08999 * 109.58521 * 170.33999 * 26 8 6 47 47 H 1.09003 * 109.58660 * 290.62672 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4120 -1.2473 2.1605 6 6 2.8893 -1.9224 3.3297 7 8 2.8097 -1.3844 4.4175 8 7 3.4267 -3.1539 3.2247 9 6 3.5407 -3.8415 1.9220 10 6 2.2563 -4.6336 1.6687 11 6 2.0057 -5.5661 2.8257 12 8 2.7865 -6.4620 3.0683 13 7 0.9020 -5.3963 3.5931 14 6 0.6914 -6.3202 4.7186 15 6 1.1379 -5.6404 6.0146 16 7 2.5618 -5.2659 5.8896 17 6 3.5653 -6.1641 6.1378 18 1 3.4002 -7.2181 5.9705 19 6 4.7948 -5.7196 6.6043 20 7 4.9252 -4.4857 7.0435 21 14 6.2645 -6.8726 6.6087 22 1 6.5474 -7.3192 5.2210 23 1 7.4498 -6.1618 7.1519 24 1 5.9644 -8.0538 7.4573 25 6 2.8496 -3.8731 5.4898 26 6 3.9299 -3.8838 4.4069 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8901 34 1 4.3919 -4.5221 1.9413 35 1 3.6776 -3.1045 1.1306 36 1 2.3614 -5.2128 0.7512 37 1 1.4178 -3.9443 1.5692 38 1 0.2686 -4.6859 3.4057 39 1 1.2775 -7.2257 4.5614 40 1 -0.3659 -6.5765 4.7868 41 1 1.0132 -6.3291 6.8502 42 1 0.5386 -4.7462 6.1857 43 1 5.7842 -4.1752 7.3699 44 1 1.9437 -3.4112 5.0972 45 1 3.2036 -3.3107 6.3537 46 1 4.1602 -4.9127 4.1304 47 1 4.8297 -3.3960 4.7818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131360462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:39 Heat of formation + Delta-G solvation = 15.369703 kcal Electronic energy + Delta-G solvation = -29241.572570 eV Core-core repulsion = 25427.156029 eV Total energy + Delta-G solvation = -3814.416540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.86236 -38.63097 -36.54703 -35.84280 -35.39335 -33.74289 -31.94498 -31.32891 -30.44472 -29.10715 -27.50106 -26.74474 -24.99245 -23.65494 -23.48035 -22.18012 -20.27189 -20.09504 -19.76481 -17.55204 -16.71222 -16.50048 -16.14944 -15.81921 -15.20700 -15.08983 -14.80684 -14.53938 -14.28372 -13.76378 -13.68105 -13.33862 -13.20793 -13.16902 -12.73477 -12.56647 -12.47793 -12.28151 -12.23808 -11.79110 -11.68565 -11.65557 -11.42780 -11.22529 -11.09251 -10.73454 -10.49657 -10.43303 -10.27503 -10.14533 -9.97300 -9.86359 -9.65999 -9.44752 -9.12874 -8.69791 -8.29209 -8.11332 -6.47256 -5.54876 -3.09538 1.80230 2.42132 3.21854 3.35767 3.48063 3.52935 3.56749 3.80383 3.86176 4.10645 4.61542 4.67454 4.82867 4.85077 5.01392 5.10746 5.26142 5.30055 5.37932 5.48287 5.49174 5.54584 5.56462 5.60132 5.67518 5.75113 5.88931 5.90251 5.91530 6.05720 6.15604 6.23840 6.51720 6.59776 6.62182 6.79688 6.92256 7.00787 7.16314 7.31055 7.50731 7.74714 7.97170 8.09037 8.10859 8.47505 8.58845 8.92635 9.33868 9.93986 10.55901 11.44013 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.004408 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.384212 B = 6350.303423 C = 6934.391178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.014 3.986 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.198 4.198 6 C 0.621 3.379 7 O -0.514 6.514 8 N -0.603 5.603 9 C 0.119 3.881 10 C -0.158 4.158 11 C 0.519 3.481 12 O -0.516 6.516 13 N -0.723 5.723 14 C 0.089 3.911 15 C 0.126 3.874 16 N -0.587 5.587 17 C -0.226 4.226 18 H 0.063 0.937 19 C 0.001 3.999 20 N -0.901 5.901 21 Si 0.895 3.105 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.284 1.284 25 C 0.172 3.828 26 C 0.114 3.886 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.390 0.610 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.251 0.749 44 H 0.025 0.975 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 6.702 -16.912 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.004 4.004 3 C -0.204 4.204 4 C -0.109 4.109 5 C -0.201 4.201 6 C 0.408 3.592 7 O -0.391 6.391 8 N -0.337 5.337 9 C -0.005 4.005 10 C -0.199 4.199 11 C 0.304 3.696 12 O -0.390 6.390 13 N -0.375 5.375 14 C -0.038 4.038 15 C -0.002 4.002 16 N -0.310 5.310 17 C -0.356 4.356 18 H 0.080 0.920 19 C -0.198 4.198 20 N -0.546 5.546 21 Si 0.726 3.274 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.211 1.211 25 C 0.047 3.953 26 C -0.006 4.006 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.223 0.777 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.953 6.393 -16.003 19.419 hybrid contribution 0.590 -0.187 -0.188 0.647 sum -8.363 6.206 -16.191 19.251 Atomic orbital electron populations 1.21836 0.93020 1.02724 1.02698 1.18411 0.96061 0.95097 0.90870 1.21847 1.01734 0.94145 1.02673 1.22485 0.95623 0.97643 0.95195 1.21188 1.02937 1.00793 0.95219 1.14704 0.78697 0.80817 0.84989 1.90890 1.55663 1.65762 1.26763 1.49067 1.59457 1.15197 1.09941 1.21700 0.97141 0.95906 0.85802 1.22178 0.99985 0.99103 0.98655 1.20279 0.81162 0.84984 0.83131 1.90745 1.44142 1.33485 1.70622 1.46044 1.25323 1.34675 1.31433 1.22323 0.98653 0.94532 0.88273 1.21455 0.87320 0.97282 0.94123 1.44494 0.99296 1.08961 1.78257 1.18854 0.91426 0.89424 1.35854 0.91958 1.25053 0.98995 0.96478 0.99230 1.70006 1.23691 1.15973 1.44914 0.86466 0.82728 0.80383 0.77854 1.21068 1.21887 1.21079 1.21202 0.92968 0.85661 0.95447 1.22812 0.98058 0.96695 0.83052 0.91959 0.91412 0.92021 0.88495 0.91927 0.92047 0.91441 0.88900 0.90333 0.88164 0.90779 0.77683 0.89600 0.92868 0.92969 0.94252 0.93828 0.95712 0.91553 0.87436 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.15 37.16 0.34 -0.65 16 2 C 0.01 0.11 3.30 -93.40 -0.31 -0.20 16 3 C -0.15 -1.06 9.15 37.16 0.34 -0.72 16 4 C -0.11 -1.30 12.56 -37.12 -0.47 -1.77 16 5 C -0.20 -3.07 11.92 -38.84 -0.46 -3.53 16 6 C 0.62 11.97 6.90 -14.33 -0.10 11.87 16 7 O -0.51 -12.00 15.52 5.27 0.08 -11.91 16 8 N -0.60 -11.30 2.44 -174.53 -0.43 -11.73 16 9 C 0.12 1.74 5.49 -3.35 -0.02 1.73 16 10 C -0.16 -2.09 6.19 -27.88 -0.17 -2.27 16 11 C 0.52 9.09 4.72 -10.66 -0.05 9.04 16 12 O -0.52 -11.30 14.88 5.55 0.08 -11.22 16 13 N -0.72 -11.58 4.71 -59.67 -0.28 -11.86 16 14 C 0.09 1.52 6.57 -3.69 -0.02 1.50 16 15 C 0.13 2.56 6.08 -3.34 -0.02 2.54 16 16 N -0.59 -14.47 2.26 -171.23 -0.39 -14.85 16 17 C -0.23 -6.16 8.40 -15.06 -0.13 -6.29 16 18 H 0.06 1.75 7.86 -52.49 -0.41 1.34 16 19 C 0.00 0.02 4.42 -17.43 -0.08 -0.06 16 20 N -0.90 -26.28 10.09 55.49 0.56 -25.72 16 21 Si 0.90 22.49 29.57 -169.99 -5.03 17.47 16 22 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.17 4.26 3.55 -3.38 -0.01 4.25 16 26 C 0.11 2.65 3.82 -3.36 -0.01 2.64 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 1.44 7.83 -51.93 -0.41 1.03 16 35 H 0.08 0.94 7.11 -51.93 -0.37 0.57 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.86 7.93 -51.93 -0.41 0.44 16 38 H 0.39 5.27 8.70 -40.82 -0.36 4.92 16 39 H 0.09 1.71 7.02 -51.93 -0.36 1.35 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 1.06 8.13 -51.93 -0.42 0.64 16 42 H 0.04 0.76 7.77 -51.93 -0.40 0.36 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.02 0.59 5.99 -51.93 -0.31 0.27 16 45 H 0.07 1.95 6.70 -51.93 -0.35 1.60 16 46 H 0.11 2.73 4.56 -51.93 -0.24 2.49 16 47 H 0.06 1.67 7.57 -51.93 -0.39 1.27 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -33.93 371.78 -8.34 -42.26 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.37 Total: 3.88 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: -1.17 Total: 18.08 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -0.53 Total: -64.16 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.16 Total: -23.13 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.93 -8.34 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131360462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.634 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds