Wall clock time and date at job start Fri Apr 10 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47405 * 2 1 4 4 C 1.47201 * 109.47062 * 119.99921 * 2 1 3 5 5 C 2.64598 * 109.46942 * 119.99989 * 2 1 3 6 6 C 4.07802 * 109.46963 * 119.99945 * 2 1 3 7 7 O 1.21611 * 119.99974 * 256.51354 * 6 5 4 8 8 N 1.34775 * 119.99781 * 76.51088 * 6 5 4 9 9 C 1.47744 * 121.65627 * 359.97438 * 8 6 5 10 10 C 1.53010 * 108.78881 * 271.26582 * 9 8 6 11 11 C 1.50702 * 109.43993 * 304.75646 * 10 9 8 12 12 O 1.21286 * 120.23868 * 296.12762 * 11 10 9 13 13 N 1.35504 * 119.51892 * 116.10726 * 11 10 9 14 14 C 1.47127 * 118.10522 * 180.29911 * 13 11 10 15 15 C 1.53012 * 109.09764 * 99.92388 * 14 13 11 16 16 N 1.47768 * 108.78952 * 301.48466 * 15 14 13 17 17 C 1.36946 * 121.63939 * 276.62582 * 16 15 14 18 18 H 1.07997 * 120.00077 * 29.14540 * 17 16 15 19 19 C 1.38808 * 119.99901 * 209.14406 * 17 16 15 20 20 N 1.31626 * 120.00247 * 12.64847 * 19 17 16 21 21 Si 1.86802 * 120.00259 * 192.64560 * 19 17 16 22 22 H 1.48504 * 109.46648 * 59.99945 * 21 19 17 23 23 H 1.48497 * 109.47517 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46877 * 300.00706 * 21 19 17 25 25 C 1.47734 * 116.71763 * 96.90347 * 16 15 14 26 26 C 1.47777 * 121.65004 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.46858 * 300.00008 * 1 2 3 28 28 H 1.08993 * 109.46718 * 60.00278 * 1 2 3 29 29 H 1.09001 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47146 * 239.99571 * 2 1 3 31 31 H 1.08996 * 109.46882 * 59.99265 * 3 2 1 32 32 H 1.08996 * 109.46995 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46389 * 299.99858 * 3 2 1 34 34 H 1.08998 * 109.58775 * 151.46965 * 9 8 6 35 35 H 1.09003 * 109.57935 * 31.05224 * 9 8 6 36 36 H 1.09007 * 109.47902 * 184.76651 * 10 9 8 37 37 H 1.08999 * 109.48315 * 64.75484 * 10 9 8 38 38 H 0.96995 * 120.94635 * 0.32011 * 13 11 10 39 39 H 1.08998 * 109.53687 * 340.03961 * 14 13 11 40 40 H 1.09001 * 109.53444 * 219.81288 * 14 13 11 41 41 H 1.08997 * 109.58707 * 181.68397 * 15 14 13 42 42 H 1.08997 * 109.69545 * 61.33814 * 15 14 13 43 43 H 0.96996 * 120.00302 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.57773 * 345.18213 * 25 16 15 45 45 H 1.08996 * 109.58396 * 105.57903 * 25 16 15 46 46 H 1.08999 * 109.58521 * 170.33999 * 26 8 6 47 47 H 1.09003 * 109.58660 * 290.62672 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4120 -1.2473 2.1605 6 6 2.8893 -1.9224 3.3297 7 8 2.8097 -1.3844 4.4175 8 7 3.4267 -3.1539 3.2247 9 6 3.5407 -3.8415 1.9220 10 6 2.2563 -4.6336 1.6687 11 6 2.0057 -5.5661 2.8257 12 8 2.7865 -6.4620 3.0683 13 7 0.9020 -5.3963 3.5931 14 6 0.6914 -6.3202 4.7186 15 6 1.1379 -5.6404 6.0146 16 7 2.5618 -5.2659 5.8896 17 6 3.5653 -6.1641 6.1378 18 1 3.4002 -7.2181 5.9705 19 6 4.7948 -5.7196 6.6043 20 7 4.9252 -4.4857 7.0435 21 14 6.2645 -6.8726 6.6087 22 1 6.5474 -7.3192 5.2210 23 1 7.4498 -6.1618 7.1519 24 1 5.9644 -8.0538 7.4573 25 6 2.8496 -3.8731 5.4898 26 6 3.9299 -3.8838 4.4069 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8901 34 1 4.3919 -4.5221 1.9413 35 1 3.6776 -3.1045 1.1306 36 1 2.3614 -5.2128 0.7512 37 1 1.4178 -3.9443 1.5692 38 1 0.2686 -4.6859 3.4057 39 1 1.2775 -7.2257 4.5614 40 1 -0.3659 -6.5765 4.7868 41 1 1.0132 -6.3291 6.8502 42 1 0.5386 -4.7462 6.1857 43 1 5.7842 -4.1752 7.3699 44 1 1.9437 -3.4112 5.0972 45 1 3.2036 -3.3107 6.3537 46 1 4.1602 -4.9127 4.1304 47 1 4.8297 -3.3960 4.7818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131360462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:38 Heat of formation + Delta-G solvation = -7.898521 kcal Electronic energy + Delta-G solvation = -29242.581555 eV Core-core repulsion = 25427.156029 eV Total energy + Delta-G solvation = -3815.425526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.35748 -40.10960 -37.72627 -37.25217 -36.88944 -35.33687 -33.25666 -32.97595 -31.96194 -30.76461 -28.50954 -28.00308 -26.71406 -25.13522 -24.82068 -23.40337 -22.01868 -21.51215 -21.16440 -18.99566 -18.41336 -17.95388 -17.57752 -17.09512 -16.70945 -16.54457 -16.39430 -15.81822 -15.46608 -15.36695 -15.14829 -14.87649 -14.68917 -14.34572 -14.29823 -13.98038 -13.75439 -13.35475 -13.12069 -13.04798 -12.97124 -12.86421 -12.74610 -12.57379 -12.39829 -12.32105 -12.25796 -12.08183 -11.88956 -11.82770 -11.64443 -11.31549 -11.22735 -11.00957 -10.69160 -10.55252 -9.94120 -9.71815 -8.52675 -7.69207 -5.26442 0.56614 1.30441 1.42836 1.45394 1.52086 1.86858 1.99766 2.51323 2.53019 2.60832 3.01848 3.37267 3.65317 3.86609 3.95996 4.07351 4.12751 4.24080 4.28657 4.38801 4.44586 4.49397 4.57228 4.62764 4.66614 4.72342 4.78671 4.81497 4.84108 4.94531 4.98572 5.01408 5.03909 5.14823 5.17421 5.28650 5.38526 5.41439 5.59669 5.72682 5.77252 5.82772 6.25576 6.36696 6.44089 6.82810 7.03735 7.20738 7.60838 7.87587 8.45967 9.25965 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.004408 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.384212 B = 6350.303423 C = 6934.391178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.009 3.991 3 C -0.148 4.148 4 C -0.041 4.041 5 C -0.261 4.261 6 C 0.625 3.375 7 O -0.571 6.571 8 N -0.603 5.603 9 C 0.116 3.884 10 C -0.146 4.146 11 C 0.509 3.491 12 O -0.565 6.565 13 N -0.716 5.716 14 C 0.102 3.898 15 C 0.119 3.881 16 N -0.599 5.599 17 C -0.219 4.219 18 H 0.054 0.946 19 C -0.045 4.045 20 N -0.928 5.928 21 Si 0.947 3.053 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.277 1.277 25 C 0.195 3.805 26 C 0.140 3.860 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.406 0.594 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.243 0.757 44 H 0.033 0.967 45 H 0.013 0.987 46 H 0.089 0.911 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 7.272 -20.933 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.009 4.009 3 C -0.205 4.205 4 C -0.043 4.043 5 C -0.264 4.264 6 C 0.415 3.585 7 O -0.452 6.452 8 N -0.335 5.335 9 C -0.007 4.007 10 C -0.187 4.187 11 C 0.296 3.704 12 O -0.443 6.443 13 N -0.369 5.369 14 C -0.025 4.025 15 C -0.007 4.007 16 N -0.323 5.323 17 C -0.349 4.349 18 H 0.071 0.929 19 C -0.240 4.240 20 N -0.575 5.575 21 Si 0.777 3.223 22 H -0.213 1.213 23 H -0.222 1.222 24 H -0.203 1.203 25 C 0.069 3.931 26 C 0.018 3.982 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.118 0.882 38 H 0.242 0.758 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.031 0.969 46 H 0.107 0.893 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.188 6.956 -20.078 24.014 hybrid contribution 1.153 -0.293 0.961 1.529 sum -10.035 6.663 -19.117 22.596 Atomic orbital electron populations 1.21863 0.91629 1.03231 1.03456 1.18881 0.97050 0.95289 0.89696 1.21885 1.01472 0.93645 1.03507 1.23389 0.91874 0.94596 0.94458 1.20335 1.06389 1.03696 0.95931 1.15043 0.77516 0.80379 0.85603 1.90854 1.57995 1.66967 1.29349 1.48938 1.59082 1.15364 1.10132 1.21955 0.97746 0.96504 0.84478 1.22169 0.99833 0.98702 0.97947 1.21086 0.80494 0.84809 0.83963 1.90728 1.45694 1.35723 1.72189 1.46030 1.25433 1.34779 1.30610 1.22039 1.00691 0.93088 0.86649 1.21696 0.84995 0.97968 0.96068 1.44635 1.00848 1.08351 1.78437 1.18905 0.92244 0.89380 1.34415 0.92878 1.25602 1.01067 0.97545 0.99823 1.70189 1.23416 1.17385 1.46471 0.85638 0.80168 0.78988 0.77543 1.21268 1.22219 1.20288 1.20755 0.93246 0.85194 0.93868 1.22085 0.96202 0.95397 0.84530 0.93275 0.88723 0.91676 0.85154 0.93281 0.92570 0.88554 0.90146 0.86660 0.84758 0.88164 0.75837 0.92348 0.88234 0.93228 0.93235 0.94742 0.94920 0.96881 0.89265 0.95810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.15 71.98 0.66 -0.61 16 2 C 0.01 0.09 3.30 -12.60 -0.04 0.05 16 3 C -0.15 -1.54 9.15 71.98 0.66 -0.88 16 4 C -0.04 -0.85 12.56 31.13 0.39 -0.46 16 5 C -0.26 -7.62 11.92 30.02 0.36 -7.26 16 6 C 0.62 24.44 6.90 85.49 0.59 25.03 16 7 O -0.57 -28.02 15.52 -4.07 -0.06 -28.09 16 8 N -0.60 -22.94 2.44 -824.34 -2.01 -24.95 16 9 C 0.12 3.21 5.49 86.14 0.47 3.68 16 10 C -0.15 -3.42 6.19 29.85 0.18 -3.23 16 11 C 0.51 17.17 4.72 87.54 0.41 17.58 16 12 O -0.57 -24.84 14.88 -3.05 -0.05 -24.89 16 13 N -0.72 -21.68 4.71 -460.66 -2.17 -23.85 16 14 C 0.10 3.36 6.57 86.26 0.57 3.93 16 15 C 0.12 4.85 6.08 86.14 0.52 5.37 16 16 N -0.60 -30.56 2.26 -695.64 -1.57 -32.13 16 17 C -0.22 -12.38 8.40 84.03 0.71 -11.67 16 18 H 0.05 3.08 7.86 -2.91 -0.02 3.06 16 19 C -0.05 -2.62 4.42 84.86 0.38 -2.25 16 20 N -0.93 -57.26 10.09 21.65 0.22 -57.04 16 21 Si 0.95 47.94 29.57 68.60 2.03 49.97 16 22 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 23 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 24 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 25 C 0.20 10.13 3.55 86.13 0.31 10.44 16 26 C 0.14 6.89 3.82 86.12 0.33 7.22 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.08 2.45 7.83 -2.39 -0.02 2.44 16 35 H 0.12 2.38 7.11 -2.39 -0.02 2.37 16 36 H 0.13 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.10 1.86 7.93 -2.39 -0.02 1.84 16 38 H 0.41 9.82 8.70 -92.71 -0.81 9.02 16 39 H 0.06 2.31 7.02 -2.39 -0.02 2.29 16 40 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.05 2.02 8.13 -2.39 -0.02 2.00 16 42 H 0.05 1.90 7.77 -2.39 -0.02 1.88 16 43 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.03 1.61 5.99 -2.39 -0.01 1.59 16 45 H 0.01 0.83 6.70 -2.39 -0.02 0.82 16 46 H 0.09 4.74 4.56 -2.39 -0.01 4.73 16 47 H 0.02 1.33 7.57 -2.39 -0.02 1.32 16 Total: -1.00 -81.86 371.78 3.05 -78.81 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.18 Total: 15.22 kcal Atomic # 6 Polarization: 40.45 SS G_CDS: 6.49 Total: 46.94 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -5.54 Total: -137.96 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.11 Total: -52.97 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -81.86 3.05 -78.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131360462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.914 kcal (2) G-P(sol) polarization free energy of solvation -81.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds