Wall clock time and date at job start Fri Apr 10 2020 18:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46994 * 184.14102 * 3 2 1 5 5 C 1.34774 * 119.99752 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00213 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.99944 * 180.02562 * 5 4 3 8 8 C 1.50697 * 109.47639 * 179.97438 * 7 5 4 9 9 O 1.21287 * 119.99760 * 359.97438 * 8 7 5 10 10 N 1.34770 * 120.00686 * 179.97438 * 8 7 5 11 11 C 1.46931 * 120.62942 * 359.97438 * 10 8 7 12 12 C 1.53187 * 108.77858 * 233.58820 * 11 10 8 13 13 C 1.53036 * 109.33909 * 305.34763 * 12 11 10 14 14 H 1.08997 * 109.46472 * 181.39933 * 13 12 11 15 15 C 1.52998 * 109.46234 * 301.36304 * 13 12 11 16 16 C 1.53109 * 109.50477 * 61.34678 * 13 12 11 17 17 H 1.09001 * 109.48443 * 58.61442 * 16 13 12 18 18 C 1.52994 * 109.51765 * 178.68347 * 16 13 12 19 19 N 1.46506 * 109.47245 * 184.87235 * 18 16 13 20 20 C 1.36940 * 120.00039 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99830 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99863 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99823 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99885 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47143 * 90.00001 * 24 22 20 26 26 H 1.48507 * 109.46767 * 209.99842 * 24 22 20 27 27 H 1.48499 * 109.47083 * 329.99536 * 24 22 20 28 28 C 1.46925 * 120.63591 * 179.97438 * 10 8 7 29 29 H 4.40640 * 5.51376 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47192 * 64.14133 * 3 2 1 31 31 H 1.09003 * 109.47167 * 304.14342 * 3 2 1 32 32 H 0.96992 * 120.00211 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.47351 * 59.99336 * 7 5 4 34 34 H 1.09003 * 109.47205 * 300.00032 * 7 5 4 35 35 H 1.09004 * 109.58377 * 113.79779 * 11 10 8 36 36 H 1.09007 * 109.58589 * 353.37902 * 11 10 8 37 37 H 1.09002 * 109.49796 * 65.31697 * 12 11 10 38 38 H 1.09000 * 109.49812 * 185.38420 * 12 11 10 39 39 H 1.08996 * 109.47644 * 59.99935 * 15 13 12 40 40 H 1.08999 * 109.47393 * 179.97438 * 15 13 12 41 41 H 1.09003 * 109.47046 * 299.99889 * 15 13 12 42 42 H 1.09004 * 109.47605 * 304.87435 * 18 16 13 43 43 H 1.09001 * 109.47420 * 64.87155 * 18 16 13 44 44 H 0.96998 * 119.99668 * 0.02562 * 19 18 16 45 45 H 0.96999 * 120.00212 * 180.02562 * 23 22 20 46 46 H 1.08995 * 109.58986 * 246.19918 * 28 10 8 47 47 H 1.08997 * 109.58553 * 6.48618 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3785 0.0997 5 6 4.4586 1.6247 0.1170 6 8 5.2472 0.7057 0.0504 7 6 4.9603 3.0420 0.2202 8 6 6.4673 3.0428 0.2201 9 8 7.0743 1.9955 0.1442 10 7 7.1407 4.2072 0.3043 11 6 6.4195 5.4840 0.3962 12 6 6.9279 6.4180 -0.7064 13 6 8.4491 6.5470 -0.5999 14 1 8.8103 7.2307 -1.3681 15 6 8.8190 7.0913 0.7813 16 6 9.0937 5.1721 -0.7953 17 1 8.8104 4.7728 -1.7692 18 6 10.6160 5.3061 -0.7215 19 7 11.2353 4.0132 -1.0237 20 6 12.5990 3.8891 -1.0173 21 1 13.2180 4.7443 -0.7898 22 6 13.1857 2.6639 -1.3031 23 7 14.4965 2.5445 -1.2964 24 14 12.1150 1.1849 -1.6971 25 1 11.8688 1.1278 -3.1605 26 1 12.8057 -0.0560 -1.2627 27 1 10.8196 1.3068 -0.9814 28 6 8.6098 4.2240 0.3059 29 1 -1.0502 -0.0004 -0.0002 30 1 3.0095 -0.4474 -0.9248 31 1 3.0096 -0.5760 0.8506 32 1 2.5031 2.1135 0.1534 33 1 4.5972 3.4896 1.1454 34 1 4.5963 3.6191 -0.6299 35 1 6.6010 5.9367 1.3711 36 1 5.3514 5.3107 0.2647 37 1 6.6650 6.0070 -1.6812 38 1 6.4705 7.4006 -0.5905 39 1 8.4576 6.4082 1.5499 40 1 9.9025 7.1829 0.8576 41 1 8.3606 8.0704 0.9207 42 1 10.9511 6.0478 -1.4466 43 1 10.9048 5.6218 0.2810 44 1 10.6793 3.2452 -1.2283 45 1 14.9065 1.6885 -1.4964 46 1 8.9702 4.5738 1.2732 47 1 8.9870 3.2189 0.1172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132762150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:44 Heat of formation + Delta-G solvation = -27.851720 kcal Electronic energy + Delta-G solvation = -27381.659607 eV Core-core repulsion = 23565.368846 eV Total energy + Delta-G solvation = -3816.290762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.71656 -40.57408 -38.99737 -36.79766 -36.43464 -34.91415 -33.67359 -33.63968 -32.26372 -31.33666 -28.72341 -28.12269 -26.95931 -25.59856 -24.57406 -22.53290 -22.17523 -21.00681 -19.90738 -19.40515 -18.98520 -18.55343 -17.45671 -17.09609 -17.00724 -16.81299 -16.53609 -16.09588 -15.91411 -15.88418 -15.28970 -14.98215 -14.80885 -14.67603 -14.49187 -14.33747 -14.18476 -14.05346 -13.84746 -13.39197 -13.03769 -12.95031 -12.92408 -12.62531 -12.39520 -12.26494 -11.98799 -11.90664 -11.81414 -11.68044 -11.47578 -11.36927 -11.25056 -11.03575 -10.95463 -10.49929 -10.15187 -9.52342 -9.32568 -8.09723 -5.40411 1.28361 1.33106 1.34385 1.40553 1.57445 1.70274 1.82645 1.96310 2.39538 2.57467 3.22495 3.34470 3.38248 3.52823 3.79403 3.83367 3.88466 4.05150 4.14605 4.27200 4.32787 4.33326 4.43934 4.47313 4.55728 4.57121 4.60747 4.78128 4.80138 4.84453 4.93559 4.99327 5.05273 5.10191 5.22432 5.25527 5.29128 5.33610 5.44658 5.58321 5.64228 5.71288 6.16022 6.44310 6.53260 6.56643 7.01882 7.19405 7.34783 7.80192 7.96226 9.11890 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012310 B = 0.003289 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.007849 B = 8511.112406 C =10539.042806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.248 4.248 3 C 0.231 3.769 4 N -0.714 5.714 5 C 0.506 3.494 6 O -0.556 6.556 7 C -0.146 4.146 8 C 0.496 3.504 9 O -0.567 6.567 10 N -0.608 5.608 11 C 0.095 3.905 12 C -0.123 4.123 13 C -0.080 4.080 14 H 0.079 0.921 15 C -0.151 4.151 16 C -0.094 4.094 17 H 0.057 0.943 18 C 0.160 3.840 19 N -0.763 5.763 20 C -0.227 4.227 21 H 0.067 0.933 22 C -0.054 4.054 23 N -0.978 5.978 24 Si 0.940 3.060 25 H -0.277 1.277 26 H -0.292 1.292 27 H -0.274 1.274 28 C 0.125 3.875 29 H 0.256 0.744 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.421 0.579 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.064 0.936 38 H 0.113 0.887 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.081 0.919 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.360 0.640 45 H 0.258 0.742 46 H 0.073 0.927 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.675 10.439 4.952 38.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.249 4.249 3 C 0.108 3.892 4 N -0.370 5.370 5 C 0.292 3.708 6 O -0.432 6.432 7 C -0.187 4.187 8 C 0.284 3.716 9 O -0.444 6.444 10 N -0.342 5.342 11 C -0.025 4.025 12 C -0.161 4.161 13 C -0.099 4.099 14 H 0.097 0.903 15 C -0.208 4.208 16 C -0.114 4.114 17 H 0.075 0.925 18 C 0.034 3.966 19 N -0.408 5.408 20 C -0.358 4.358 21 H 0.084 0.916 22 C -0.246 4.246 23 N -0.629 5.629 24 Si 0.769 3.231 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.199 1.199 28 C 0.001 3.999 29 H 0.272 0.728 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.258 0.742 33 H 0.187 0.813 34 H 0.184 0.816 35 H 0.107 0.893 36 H 0.143 0.857 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.193 0.807 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -35.562 9.299 4.901 37.083 hybrid contribution 0.250 -1.352 -0.401 1.432 sum -35.311 7.947 4.500 36.473 Atomic orbital electron populations 1.25861 0.96597 0.95006 0.98522 1.22865 0.94228 1.04843 1.02930 1.17870 0.84191 0.84455 1.02709 1.45768 1.06398 1.08982 1.75812 1.20688 0.82133 0.91792 0.76163 1.90913 1.56070 1.47629 1.48569 1.21672 0.91161 0.95277 1.10613 1.20949 0.91148 0.83080 0.76449 1.90894 1.70938 1.32974 1.49591 1.48249 1.05975 1.07279 1.72696 1.22267 0.97917 0.81796 1.00554 1.21958 0.93809 1.01392 0.98974 1.21084 0.96382 0.93337 0.99138 0.90311 1.21970 1.01291 1.01685 0.95836 1.21621 0.94107 0.97634 0.98027 0.92473 1.20905 0.91158 0.86450 0.98131 1.42918 1.02926 1.09107 1.85881 1.19086 0.82980 0.95922 1.37823 0.91550 1.25285 0.96373 0.99958 1.03011 1.69831 1.09577 1.25327 1.58121 0.85639 0.78621 0.80433 0.78381 1.20360 1.21808 1.19942 1.21354 0.80223 0.99275 0.99024 0.72804 0.90342 0.90194 0.74165 0.81291 0.81568 0.89259 0.85710 0.91764 0.86924 0.92386 0.93906 0.90020 0.95142 0.94814 0.80748 0.93264 0.90892 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 19.25 74.32 1.43 0.29 16 2 C -0.25 -3.16 13.46 31.12 0.42 -2.75 16 3 C 0.23 3.78 6.15 84.57 0.52 4.30 16 4 N -0.71 -9.79 5.54 -472.13 -2.61 -12.40 16 5 C 0.51 11.10 7.82 87.66 0.69 11.79 16 6 O -0.56 -20.49 14.18 20.40 0.29 -20.20 16 7 C -0.15 -1.95 4.53 29.10 0.13 -1.82 16 8 C 0.50 13.81 7.69 87.66 0.67 14.48 16 9 O -0.57 -24.67 13.59 20.39 0.28 -24.39 16 10 N -0.61 -14.16 2.97 -818.97 -2.43 -16.60 16 11 C 0.10 0.99 5.87 86.36 0.51 1.50 16 12 C -0.12 -1.38 5.62 30.67 0.17 -1.21 16 13 C -0.08 -1.53 2.71 -10.75 -0.03 -1.56 16 14 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 15 C -0.15 -2.61 8.12 71.98 0.58 -2.03 16 16 C -0.09 -2.84 2.15 -10.71 -0.02 -2.86 16 17 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 18 C 0.16 6.27 5.19 86.38 0.45 6.71 16 19 N -0.76 -39.06 5.18 -343.44 -1.78 -40.84 16 20 C -0.23 -13.79 10.47 84.03 0.88 -12.91 16 21 H 0.07 4.28 8.06 -2.91 -0.02 4.26 16 22 C -0.05 -3.44 5.50 84.86 0.47 -2.97 16 23 N -0.98 -65.75 13.97 21.65 0.30 -65.45 16 24 Si 0.94 51.79 27.74 68.60 1.90 53.70 16 25 H -0.28 -14.81 7.11 99.48 0.71 -14.10 16 26 H -0.29 -16.00 7.11 99.48 0.71 -15.29 16 27 H -0.27 -15.07 6.52 99.48 0.65 -14.42 16 28 C 0.12 4.02 5.05 86.35 0.44 4.45 16 29 H 0.26 -0.10 7.80 -4.41 -0.03 -0.13 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.42 2.31 8.45 -92.71 -0.78 1.52 16 33 H 0.17 0.64 7.95 -2.39 -0.02 0.63 16 34 H 0.17 0.74 7.69 -2.39 -0.02 0.72 16 35 H 0.09 0.74 6.69 -2.38 -0.02 0.72 16 36 H 0.12 0.21 5.93 -2.38 -0.01 0.20 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.06 1.00 4.98 -2.39 -0.01 0.99 16 40 H 0.04 0.93 6.57 -2.39 -0.02 0.92 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.03 1.32 6.73 -2.39 -0.02 1.31 16 44 H 0.36 18.79 4.76 -92.71 -0.44 18.35 16 45 H 0.26 16.59 8.31 -92.71 -0.77 15.82 16 46 H 0.07 2.26 6.69 -2.39 -0.02 2.25 16 47 H 0.04 1.85 6.21 -2.39 -0.01 1.83 16 Total: -1.00 -98.46 375.45 2.96 -95.50 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.29 Total: 15.27 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 7.30 Total: 15.41 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -6.53 Total: -135.29 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: 0.57 Total: -44.59 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.90 Total: 53.70 kcal Total: -98.46 2.96 -95.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132762150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.643 kcal (2) G-P(sol) polarization free energy of solvation -98.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds