Wall clock time and date at job start Fri Apr 10 2020 18:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.52997 * 109.46982 * 184.99911 * 4 2 1 6 6 H 1.09002 * 109.47251 * 304.99612 * 5 4 2 7 7 C 1.53001 * 109.46823 * 184.99573 * 5 4 2 8 8 N 1.46499 * 109.47207 * 65.00063 * 5 4 2 9 9 C 1.34774 * 119.99826 * 204.99982 * 8 5 4 10 10 O 1.21609 * 120.00345 * 359.97438 * 9 8 5 11 11 C 1.43201 * 119.99896 * 179.97438 * 9 8 5 12 12 C 5.85887 * 137.40021 * 20.74775 * 2 1 3 13 13 C 7.12546 * 131.24522 * 17.20334 * 2 1 3 14 14 C 1.53000 * 117.49669 * 57.00862 * 13 12 11 15 15 C 1.53000 * 60.00044 * 252.51073 * 14 13 12 16 16 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 17 17 C 1.46899 * 111.00029 * 85.00270 * 16 2 1 18 18 C 1.50703 * 109.47107 * 179.97438 * 17 16 2 19 19 O 1.21286 * 120.00016 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00161 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00108 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00333 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99712 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00268 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99577 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47125 * 60.00705 * 25 23 21 27 27 H 1.48508 * 109.46668 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47356 * 299.99860 * 25 23 21 29 29 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 30 30 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 31 31 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 33 33 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 34 34 H 1.09005 * 109.46941 * 60.00437 * 7 5 4 35 35 H 1.09000 * 109.47024 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47238 * 300.00046 * 7 5 4 37 37 H 0.97002 * 119.99935 * 24.99423 * 8 5 4 38 38 H 1.08995 * 115.54977 * 202.71934 * 13 12 11 39 39 H 1.08997 * 117.49684 * 0.02562 * 14 13 12 40 40 H 1.09001 * 117.49746 * 145.02029 * 14 13 12 41 41 H 1.09000 * 117.49838 * 252.50976 * 15 14 13 42 42 H 1.09003 * 117.49518 * 107.49164 * 15 14 13 43 43 H 1.00908 * 110.99583 * 208.95182 * 16 2 1 44 44 H 1.09002 * 109.47043 * 299.99792 * 17 16 2 45 45 H 1.09001 * 109.47354 * 59.99854 * 17 16 2 46 46 H 0.97005 * 119.99463 * 359.97438 * 20 18 17 47 47 H 0.96996 * 119.99832 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 1 3.9954 -0.9924 0.3867 7 6 4.0851 -1.4385 2.4923 8 7 3.9479 0.7892 1.4925 9 6 5.1611 1.2134 1.0867 10 8 5.9380 0.4317 0.5725 11 6 5.5355 2.5845 1.2611 12 6 5.8427 3.7085 1.4049 13 6 6.2277 5.1179 1.5846 14 6 7.1619 5.7336 0.5410 15 6 7.6860 5.4118 1.9420 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5884 -0.5214 -3.5558 19 8 2.8695 -1.6981 -3.4699 20 7 2.7296 0.1210 -4.7322 21 6 3.1894 -0.5560 -5.8320 22 1 3.4389 -1.6039 -5.7558 23 6 3.3344 0.1062 -7.0450 24 7 3.0313 1.3815 -7.1377 25 14 3.9616 -0.8161 -8.5435 26 1 3.0404 -1.9383 -8.8554 27 1 4.0245 0.1090 -9.7035 28 1 5.3178 -1.3521 -8.2630 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7717 1.2054 34 1 3.8000 -2.4822 2.3592 35 1 5.1714 -1.3620 2.5380 36 1 3.6545 -1.0596 3.4193 37 1 3.3284 1.4127 1.9029 38 1 5.4634 5.7623 2.0189 39 1 7.4911 5.0951 -0.2788 40 1 7.0122 6.7833 0.2885 41 1 7.8812 6.2498 2.6111 42 1 8.3604 4.5615 2.0440 43 1 2.9173 -1.1205 -1.0288 44 1 1.0870 0.6165 -2.5525 45 1 2.7588 1.0463 -2.1182 46 1 2.5051 1.0622 -4.8008 47 1 3.1328 1.8438 -7.9843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134327062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:01 Heat of formation + Delta-G solvation = -28.886161 kcal Electronic energy + Delta-G solvation = -26441.884092 eV Core-core repulsion = 22625.548473 eV Total energy + Delta-G solvation = -3816.335618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.16799 -40.23199 -38.67923 -38.48339 -36.31677 -35.84584 -34.08726 -33.34479 -32.59915 -31.44574 -28.23386 -27.62420 -26.16976 -25.67981 -23.48684 -23.34112 -22.24155 -21.20207 -21.18096 -20.03820 -19.87397 -17.92213 -17.85033 -17.41480 -17.01381 -16.60143 -16.28892 -16.24727 -15.96655 -15.64606 -15.52455 -15.43712 -14.70097 -14.39594 -14.01775 -13.61145 -13.58749 -13.50105 -13.37179 -13.28175 -13.06212 -12.91984 -12.85318 -12.70742 -12.47875 -12.47409 -12.39331 -12.25970 -12.13279 -11.93884 -11.61932 -11.54474 -11.52685 -11.09814 -10.82218 -10.40463 -10.27569 -10.05830 -9.36114 -8.49811 -5.99138 0.33172 1.13233 1.37215 1.38434 1.50153 1.89772 2.00023 2.20016 2.26765 2.89906 3.03537 3.09699 3.16443 3.46424 3.60521 3.78669 3.83321 3.96734 3.97621 4.09150 4.22541 4.32946 4.39020 4.42428 4.46465 4.51779 4.60349 4.72556 4.72839 4.78407 4.91868 4.93900 4.99383 5.02972 5.05446 5.16981 5.19392 5.24539 5.35026 5.37147 5.47385 5.88140 6.07300 6.10173 6.30626 6.36365 6.55808 6.97806 7.08260 7.50624 8.06278 8.67642 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.008125 B = 0.003258 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.138820 B = 8591.936530 C =10884.566097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.077 3.923 3 H 0.046 0.954 4 C -0.116 4.116 5 C 0.133 3.867 6 H 0.056 0.944 7 C -0.155 4.155 8 N -0.691 5.691 9 C 0.629 3.371 10 O -0.573 6.573 11 C -0.269 4.269 12 C -0.026 4.026 13 C -0.083 4.083 14 C -0.162 4.162 15 C -0.148 4.148 16 N -0.675 5.675 17 C 0.068 3.932 18 C 0.435 3.565 19 O -0.622 6.622 20 N -0.572 5.572 21 C -0.338 4.338 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.267 1.267 28 H -0.273 1.273 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.418 0.582 38 H 0.167 0.833 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.088 0.912 43 H 0.338 0.662 44 H 0.105 0.895 45 H 0.049 0.951 46 H 0.395 0.605 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.470 11.454 24.513 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.032 4.032 3 H 0.064 0.936 4 C -0.153 4.153 5 C 0.029 3.971 6 H 0.074 0.926 7 C -0.213 4.213 8 N -0.343 5.343 9 C 0.417 3.583 10 O -0.453 6.453 11 C -0.272 4.272 12 C -0.029 4.029 13 C -0.100 4.100 14 C -0.198 4.198 15 C -0.185 4.185 16 N -0.310 5.310 17 C -0.064 4.064 18 C 0.223 3.777 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.467 4.467 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.195 1.195 27 H -0.191 1.191 28 H -0.199 1.199 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.256 0.744 38 H 0.185 0.815 39 H 0.100 0.900 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.106 0.894 43 H 0.158 0.842 44 H 0.123 0.877 45 H 0.067 0.933 46 H 0.229 0.771 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.390 9.968 23.883 25.883 hybrid contribution 0.894 0.565 -0.924 1.405 sum 0.504 10.533 22.959 25.265 Atomic orbital electron populations 1.21786 0.93105 1.02414 1.02044 1.21756 0.96923 0.95954 0.88596 0.93581 1.22073 0.91369 1.03675 0.98215 1.21185 0.96435 0.80125 0.99357 0.92635 1.22102 1.00579 1.00702 0.97932 1.45797 1.15150 1.12093 1.61276 1.14932 0.82524 0.83315 0.77562 1.90869 1.52864 1.56259 1.45354 1.20628 1.05358 0.93443 1.07723 1.22203 0.95316 0.92916 0.92437 1.19380 0.96743 0.85509 1.08375 1.23230 1.00659 1.03091 0.92863 1.23234 0.92088 1.04266 0.98871 1.60306 1.34307 1.32353 1.04025 1.21522 1.01725 0.93519 0.89676 1.20884 0.83352 0.88051 0.85459 1.90478 1.56604 1.18210 1.85561 1.41922 1.58242 1.12493 1.08289 1.19646 1.42457 0.95989 0.88618 0.90430 1.26079 0.97078 0.96675 1.01403 1.69667 1.48433 1.09673 1.28282 0.84976 0.78664 0.77919 0.76687 1.19491 1.19087 1.19875 0.89582 0.93854 0.92475 0.86623 0.88562 0.90109 0.94338 0.89725 0.74386 0.81531 0.90013 0.84707 0.84304 0.89367 0.84174 0.87657 0.93349 0.77084 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.41 71.98 0.68 -1.96 16 2 C 0.08 1.72 2.59 44.91 0.12 1.84 16 3 H 0.05 1.01 7.28 -2.39 -0.02 0.99 16 4 C -0.12 -1.92 4.34 30.59 0.13 -1.79 16 5 C 0.13 2.91 2.48 44.99 0.11 3.02 16 6 H 0.06 1.72 5.72 -2.39 -0.01 1.71 16 7 C -0.16 -2.86 9.48 71.98 0.68 -2.18 16 8 N -0.69 -14.73 4.44 -450.12 -2.00 -16.73 16 9 C 0.63 19.00 7.61 85.49 0.65 19.66 16 10 O -0.57 -23.10 16.75 -4.06 -0.07 -23.17 16 11 C -0.27 -7.20 13.61 30.01 0.41 -6.79 16 12 C -0.03 -0.57 13.47 31.12 0.42 -0.15 16 13 C -0.08 -1.06 6.22 -12.60 -0.08 -1.14 16 14 C -0.16 -1.94 10.21 30.59 0.31 -1.63 16 15 C -0.15 -1.50 10.21 30.59 0.31 -1.19 16 16 N -0.68 -22.85 5.93 -495.57 -2.94 -25.79 16 17 C 0.07 2.61 5.97 85.56 0.51 3.12 16 18 C 0.44 22.56 7.82 87.66 0.69 23.24 16 19 O -0.62 -37.09 15.78 -3.05 -0.05 -37.14 16 20 N -0.57 -31.52 5.29 -306.99 -1.62 -33.14 16 21 C -0.34 -20.27 9.68 84.04 0.81 -19.46 16 22 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -51.50 13.05 21.66 0.28 -51.22 16 25 Si 0.99 44.73 29.55 68.60 2.03 46.76 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 0.95 7.45 -2.38 -0.02 0.93 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.42 5.94 8.57 -92.71 -0.79 5.14 16 38 H 0.17 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.34 12.75 6.11 -89.69 -0.55 12.20 16 44 H 0.11 3.60 7.44 -2.39 -0.02 3.58 16 45 H 0.05 1.77 8.06 -2.39 -0.02 1.75 16 46 H 0.40 20.67 7.90 -92.70 -0.73 19.94 16 47 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -81.83 402.42 0.79 -81.04 By element: Atomic # 1 Polarization: 46.11 SS G_CDS: -1.06 Total: 45.05 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.22 Total: 14.35 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -6.28 Total: -126.88 kcal Atomic # 8 Polarization: -60.20 SS G_CDS: -0.12 Total: -60.31 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -81.83 0.79 -81.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134327062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.149 kcal (2) G-P(sol) polarization free energy of solvation -81.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds