Wall clock time and date at job start Fri Apr 10 2020 18:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 N 1.46504 * 109.47048 * 179.97438 * 12 11 9 14 14 C 1.35766 * 119.61845 * 90.00185 * 13 12 11 15 15 C 1.35350 * 120.69865 * 179.97438 * 14 13 12 16 16 C 1.40196 * 119.94983 * 0.02578 * 15 14 13 17 17 C 1.36400 * 119.26546 * 0.02562 * 16 15 14 18 18 C 1.34656 * 119.63133 * 269.73331 * 13 12 11 19 19 O 1.22069 * 119.98082 * 359.97438 * 18 13 12 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 35 35 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 36 36 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 37 37 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 38 38 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 39 39 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 40 40 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 41 41 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 42 42 H 1.08000 * 119.65139 * 0.02562 * 14 13 12 43 43 H 1.08000 * 120.02497 * 180.02562 * 15 14 13 44 44 H 1.08000 * 120.36926 * 179.97438 * 16 15 14 45 45 H 1.07996 * 120.35170 * 180.02562 * 17 16 15 46 46 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 47 47 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 7 7.3529 4.2747 -0.9074 14 6 7.0828 5.1742 0.0730 15 6 7.4276 6.4753 -0.0690 16 6 8.0701 6.9056 -1.2384 17 6 8.3396 6.0006 -2.2226 18 6 7.9737 4.6561 -2.0398 19 8 8.2145 3.8345 -2.9098 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.6547 -1.0591 -3.4193 35 1 5.1716 -1.3615 -2.5380 36 1 3.8002 -2.4818 -2.3594 37 1 3.3284 1.4130 -1.9027 38 1 5.5290 2.9085 -2.3301 39 1 4.8577 3.2954 -0.7276 40 1 6.9954 2.6202 0.3316 41 1 7.6673 2.2333 -1.2706 42 1 6.5884 4.8479 0.9761 43 1 7.2078 7.1816 0.7180 44 1 8.3478 7.9423 -1.3590 45 1 8.8342 6.3128 -3.1305 46 1 2.2490 -1.6318 1.1526 47 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134514430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:09 Heat of formation + Delta-G solvation = -37.578269 kcal Electronic energy + Delta-G solvation = -27339.140771 eV Core-core repulsion = 23522.428234 eV Total energy + Delta-G solvation = -3816.712537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54665 -39.65582 -37.10965 -37.01888 -35.26194 -34.60585 -32.43297 -31.62795 -30.33922 -29.89199 -28.33282 -26.42050 -25.50874 -23.92715 -23.44492 -22.55200 -21.19945 -20.27849 -19.90605 -17.97860 -17.52004 -17.40449 -16.88228 -16.32347 -16.13027 -15.58789 -15.41526 -14.87572 -14.68496 -14.32527 -14.22903 -13.83071 -13.60831 -13.36243 -13.18855 -12.87495 -12.77479 -12.58140 -12.23218 -12.16833 -12.07941 -11.94095 -11.72352 -11.70245 -11.34799 -11.05116 -10.76127 -10.51540 -10.49332 -10.41346 -10.12642 -10.10510 -9.96869 -9.62776 -9.15162 -8.90419 -8.78410 -8.20805 -7.00931 -6.06848 -3.06428 0.59170 1.65105 2.37966 2.84884 3.34406 3.49474 3.50693 3.53515 3.71484 4.37127 4.43327 4.60522 4.66179 4.68147 4.82587 4.93012 4.99064 5.05157 5.09956 5.27745 5.32972 5.38658 5.52804 5.60077 5.64080 5.68678 5.74539 5.79971 5.86097 5.86922 5.91942 6.01804 6.03283 6.19255 6.28252 6.28880 6.33769 6.45412 6.59225 6.72469 6.83688 6.88577 6.97659 7.69857 7.80765 7.84986 8.44372 8.78088 9.25543 10.11706 10.26755 11.41543 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003471 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.944317 B = 8064.726182 C = 9564.393284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.178 3.822 3 H 0.046 0.954 4 C -0.133 4.133 5 C 0.145 3.855 6 H 0.102 0.898 7 C -0.162 4.162 8 N -0.715 5.715 9 C 0.521 3.479 10 O -0.533 6.533 11 C -0.154 4.154 12 C 0.105 3.895 13 N -0.494 5.494 14 C 0.139 3.861 15 C -0.239 4.239 16 C -0.015 4.015 17 C -0.249 4.249 18 C 0.510 3.490 19 O -0.552 6.552 20 N -0.732 5.732 21 C -0.327 4.327 22 H 0.060 0.940 23 C -0.044 4.044 24 N -0.943 5.943 25 Si 1.077 2.923 26 H -0.285 1.285 27 H -0.297 1.297 28 H -0.297 1.297 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.395 0.605 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.165 0.835 43 H 0.145 0.855 44 H 0.133 0.867 45 H 0.146 0.854 46 H 0.366 0.634 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.612 16.255 -11.584 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.068 3.932 3 H 0.064 0.936 4 C -0.171 4.171 5 C 0.041 3.959 6 H 0.120 0.880 7 C -0.220 4.220 8 N -0.366 5.366 9 C 0.306 3.694 10 O -0.410 6.410 11 C -0.195 4.195 12 C -0.017 4.017 13 N -0.204 5.204 14 C 0.012 3.988 15 C -0.262 4.262 16 C -0.037 4.037 17 C -0.271 4.271 18 C 0.312 3.688 19 O -0.434 6.434 20 N -0.375 5.375 21 C -0.458 4.458 22 H 0.078 0.922 23 C -0.242 4.242 24 N -0.588 5.588 25 Si 0.908 3.092 26 H -0.210 1.210 27 H -0.225 1.225 28 H -0.224 1.224 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.228 0.772 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.182 0.818 43 H 0.163 0.837 44 H 0.151 0.849 45 H 0.164 0.836 46 H 0.199 0.801 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.731 15.182 -10.133 19.131 hybrid contribution -0.949 0.394 -1.742 2.023 sum 4.782 15.575 -11.876 20.162 Atomic orbital electron populations 1.22444 0.99478 1.00758 0.99867 1.20145 0.91520 0.95461 0.86080 0.93575 1.22195 0.93845 1.02144 0.98956 1.21007 0.94960 0.80246 0.99724 0.88001 1.22189 1.01661 1.00112 0.98043 1.45929 1.16385 1.11675 1.62573 1.20098 0.82093 0.89298 0.77901 1.90748 1.50937 1.56544 1.42756 1.21916 0.97626 0.95692 1.04260 1.21767 0.96286 0.79348 1.04285 1.45660 1.47801 1.10582 1.16355 1.22132 0.94343 0.89822 0.92548 1.20672 1.09302 0.95111 1.01137 1.21447 0.90723 0.99898 0.91652 1.22121 1.09861 0.92217 1.02878 1.17218 0.79642 0.90520 0.81423 1.90979 1.56987 1.54375 1.41083 1.42407 1.79140 1.09690 1.06243 1.19937 1.41786 0.94862 0.89185 0.92159 1.25679 0.99514 0.97506 1.01482 1.70870 1.51342 1.08209 1.28411 0.83282 0.75685 0.74319 0.75864 1.21047 1.22472 1.22420 0.93655 0.92851 0.94594 0.90760 0.91895 0.93040 0.92401 0.91775 0.77181 0.88387 0.88421 0.87753 0.87215 0.81785 0.83723 0.84920 0.83630 0.80116 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.18 3.30 2.84 -67.93 -0.19 3.11 16 3 H 0.05 0.88 7.56 -51.93 -0.39 0.48 16 4 C -0.13 -1.98 4.29 -26.73 -0.11 -2.10 16 5 C 0.14 2.30 2.52 -67.93 -0.17 2.13 16 6 H 0.10 2.12 7.05 -51.93 -0.37 1.76 16 7 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 8 N -0.71 -10.09 4.45 -53.80 -0.24 -10.33 16 9 C 0.52 8.13 7.79 -10.98 -0.09 8.04 16 10 O -0.53 -10.67 15.64 5.56 0.09 -10.58 16 11 C -0.15 -1.80 6.02 -27.88 -0.17 -1.97 16 12 C 0.10 1.28 4.63 -4.04 -0.02 1.26 16 13 N -0.49 -5.39 2.58 -119.77 -0.31 -5.70 16 14 C 0.14 1.11 10.28 -16.84 -0.17 0.93 16 15 C -0.24 -1.60 10.01 -39.88 -0.40 -2.00 16 16 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 17 C -0.25 -2.47 9.99 -39.38 -0.39 -2.87 16 18 C 0.51 6.64 7.41 -15.45 -0.11 6.52 16 19 O -0.55 -9.34 16.63 4.86 0.08 -9.26 16 20 N -0.73 -17.56 4.49 -53.43 -0.24 -17.80 16 21 C -0.33 -8.95 9.93 -15.06 -0.15 -9.10 16 22 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 23 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 24 N -0.94 -29.21 13.70 55.49 0.76 -28.45 16 25 Si 1.08 25.86 29.92 -169.99 -5.09 20.78 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.39 4.39 8.60 -40.82 -0.35 4.04 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.23 7.97 -51.93 -0.41 0.81 16 41 H 0.11 1.59 7.33 -51.93 -0.38 1.21 16 42 H 0.16 0.93 8.04 -52.49 -0.42 0.51 16 43 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.37 9.25 6.63 -40.82 -0.27 8.97 16 47 H 0.26 7.79 6.77 -40.82 -0.28 7.51 16 LS Contribution 392.40 15.07 5.91 5.91 Total: -1.00 -36.66 392.40 -8.38 -45.04 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -7.58 Total: 12.70 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.77 Total: -2.31 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.03 Total: -62.29 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.17 Total: -19.84 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.09 Total: 20.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.66 -8.38 -45.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134514430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.465 kcal (2) G-P(sol) polarization free energy of solvation -36.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds