Wall clock time and date at job start Fri Apr 10 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 N 1.46504 * 109.47048 * 179.97438 * 12 11 9 14 14 C 1.35766 * 119.61845 * 90.00185 * 13 12 11 15 15 C 1.35350 * 120.69865 * 179.97438 * 14 13 12 16 16 C 1.40196 * 119.94983 * 0.02578 * 15 14 13 17 17 C 1.36400 * 119.26546 * 0.02562 * 16 15 14 18 18 C 1.34656 * 119.63133 * 269.73331 * 13 12 11 19 19 O 1.22069 * 119.98082 * 359.97438 * 18 13 12 20 20 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 2 1 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 2 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 31 31 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 32 32 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 33 33 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 34 34 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 35 35 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 36 36 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 37 37 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 38 38 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 39 39 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 40 40 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 41 41 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 42 42 H 1.08000 * 119.65139 * 0.02562 * 14 13 12 43 43 H 1.08000 * 120.02497 * 180.02562 * 15 14 13 44 44 H 1.08000 * 120.36926 * 179.97438 * 16 15 14 45 45 H 1.07996 * 120.35170 * 180.02562 * 17 16 15 46 46 H 0.97004 * 119.99747 * 95.00774 * 20 2 1 47 47 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 7 7.3529 4.2747 -0.9074 14 6 7.0828 5.1742 0.0730 15 6 7.4276 6.4753 -0.0690 16 6 8.0701 6.9056 -1.2384 17 6 8.3396 6.0006 -2.2226 18 6 7.9737 4.6561 -2.0398 19 8 8.2145 3.8345 -2.9098 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0075 2.3758 22 1 1.8918 1.0403 2.4244 23 6 2.6122 -0.6617 3.5091 24 7 2.9205 -1.9400 3.4511 25 14 2.7899 0.2699 5.1184 26 1 3.2931 -0.6500 6.1700 27 1 3.7495 1.3891 4.9391 28 1 1.4684 0.8113 5.5254 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.7517 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.6547 -1.0591 -3.4193 35 1 5.1716 -1.3615 -2.5380 36 1 3.8002 -2.4818 -2.3594 37 1 3.3284 1.4130 -1.9027 38 1 5.5290 2.9085 -2.3301 39 1 4.8577 3.2954 -0.7276 40 1 6.9954 2.6202 0.3316 41 1 7.6673 2.2333 -1.2706 42 1 6.5884 4.8479 0.9761 43 1 7.2078 7.1816 0.7180 44 1 8.3478 7.9423 -1.3590 45 1 8.8342 6.3128 -3.1305 46 1 2.2490 -1.6318 1.1526 47 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134514430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:08 Heat of formation + Delta-G solvation = -63.018384 kcal Electronic energy + Delta-G solvation = -27340.243937 eV Core-core repulsion = 23522.428234 eV Total energy + Delta-G solvation = -3817.815703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.38482 -40.92403 -38.53423 -37.97716 -36.37557 -35.95638 -34.18655 -32.81132 -31.40190 -30.70798 -30.15051 -27.70005 -26.44557 -25.52198 -24.66791 -23.45168 -22.43824 -21.56790 -21.34365 -19.45453 -18.87637 -18.30815 -17.87021 -17.36442 -17.13424 -16.72873 -16.64472 -16.39951 -15.93911 -15.51105 -15.43607 -15.10824 -14.98605 -14.65018 -14.57802 -14.18937 -13.82744 -13.57910 -13.46143 -13.26712 -13.15445 -12.94859 -12.85164 -12.77426 -12.70504 -12.51568 -12.32364 -12.18887 -11.91366 -11.86235 -11.58416 -11.23190 -11.16171 -11.03027 -10.90752 -10.85533 -10.06545 -9.04300 -8.98531 -8.32272 -5.24364 -0.07795 0.91861 1.50740 1.55889 1.61081 1.66811 1.82405 2.27433 2.69295 2.74540 3.46893 3.55160 3.60402 3.69607 3.74790 3.84374 3.93476 4.00197 4.05024 4.18478 4.28238 4.28845 4.34824 4.44770 4.47297 4.59544 4.65293 4.69551 4.71739 4.74413 4.84904 4.93456 5.00911 5.08004 5.13887 5.21136 5.24854 5.33587 5.40220 5.53571 5.55941 5.65988 5.66356 6.10380 6.53931 6.55010 6.97133 7.17241 7.26855 8.07612 8.19942 9.20066 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003471 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.944317 B = 8064.726182 C = 9564.393284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.170 3.830 3 H 0.046 0.954 4 C -0.119 4.119 5 C 0.148 3.852 6 H 0.045 0.955 7 C -0.153 4.153 8 N -0.704 5.704 9 C 0.513 3.487 10 O -0.587 6.587 11 C -0.137 4.137 12 C 0.109 3.891 13 N -0.492 5.492 14 C 0.123 3.877 15 C -0.224 4.224 16 C 0.009 3.991 17 C -0.278 4.278 18 C 0.492 3.508 19 O -0.612 6.612 20 N -0.744 5.744 21 C -0.315 4.315 22 H 0.065 0.935 23 C -0.110 4.110 24 N -0.982 5.982 25 Si 1.121 2.879 26 H -0.299 1.299 27 H -0.278 1.278 28 H -0.276 1.276 29 H 0.039 0.961 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.413 0.587 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.189 0.811 43 H 0.182 0.818 44 H 0.171 0.829 45 H 0.148 0.852 46 H 0.355 0.645 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.988 19.964 -11.927 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.064 0.936 4 C -0.157 4.157 5 C 0.043 3.957 6 H 0.064 0.936 7 C -0.211 4.211 8 N -0.355 5.355 9 C 0.300 3.700 10 O -0.467 6.467 11 C -0.178 4.178 12 C -0.013 4.013 13 N -0.201 5.201 14 C -0.003 4.003 15 C -0.246 4.246 16 C -0.013 4.013 17 C -0.299 4.299 18 C 0.297 3.703 19 O -0.500 6.500 20 N -0.387 5.387 21 C -0.447 4.447 22 H 0.083 0.917 23 C -0.301 4.301 24 N -0.631 5.631 25 Si 0.947 3.053 26 H -0.225 1.225 27 H -0.204 1.204 28 H -0.203 1.203 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.250 0.750 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.206 0.794 43 H 0.199 0.801 44 H 0.188 0.812 45 H 0.165 0.835 46 H 0.186 0.814 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.036 18.982 -10.514 22.072 hybrid contribution -0.481 -0.643 -1.648 1.833 sum 3.555 18.340 -12.162 22.291 Atomic orbital electron populations 1.22302 0.97809 1.00720 1.00784 1.20440 0.92481 0.95291 0.85540 0.93584 1.22093 0.92771 1.02153 0.98727 1.20795 0.95527 0.81307 0.98091 0.93626 1.22097 1.00313 1.00341 0.98365 1.45835 1.16338 1.11448 1.61926 1.20796 0.81843 0.90521 0.76848 1.90729 1.52498 1.58249 1.45210 1.21814 0.97690 0.93167 1.05107 1.21544 0.95924 0.80107 1.03730 1.45570 1.47537 1.10302 1.16673 1.22716 0.94942 0.90076 0.92584 1.21199 1.06952 0.94950 1.01454 1.21896 0.88054 1.01042 0.90323 1.22131 1.12008 0.91270 1.04531 1.17759 0.79798 0.91368 0.81374 1.90933 1.59993 1.55903 1.43214 1.42644 1.79447 1.09350 1.07211 1.20279 1.39100 0.95036 0.90236 0.91733 1.27044 1.00270 0.97620 1.05174 1.70983 1.54546 1.09633 1.27890 0.82712 0.76865 0.73600 0.72111 1.22517 1.20376 1.20263 0.94193 0.95156 0.90386 0.90806 0.87507 0.90033 0.94566 0.91196 0.74986 0.87589 0.85572 0.87586 0.90551 0.79356 0.80068 0.81155 0.83454 0.81390 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.01 9.49 71.98 0.68 -4.32 16 2 C 0.17 6.05 2.84 44.99 0.13 6.18 16 3 H 0.05 1.64 7.56 -2.38 -0.02 1.62 16 4 C -0.12 -3.30 4.29 30.60 0.13 -3.17 16 5 C 0.15 4.66 2.52 45.00 0.11 4.78 16 6 H 0.05 2.00 7.05 -2.39 -0.02 1.98 16 7 C -0.15 -4.15 9.48 71.98 0.68 -3.47 16 8 N -0.70 -19.24 4.45 -442.51 -1.97 -21.20 16 9 C 0.51 16.27 7.79 87.66 0.68 16.95 16 10 O -0.59 -24.91 15.64 -3.04 -0.05 -24.95 16 11 C -0.14 -3.14 6.02 29.85 0.18 -2.96 16 12 C 0.11 2.76 4.63 86.38 0.40 3.16 16 13 N -0.49 -10.53 2.58 -650.96 -1.68 -12.21 16 14 C 0.12 1.62 10.28 83.42 0.86 2.48 16 15 C -0.22 -2.02 10.01 22.08 0.22 -1.80 16 16 C 0.01 0.09 10.10 22.32 0.23 0.32 16 17 C -0.28 -5.27 9.99 22.40 0.22 -5.05 16 18 C 0.49 13.11 7.41 84.82 0.63 13.74 16 19 O -0.61 -22.22 16.63 -5.54 -0.09 -22.32 16 20 N -0.74 -36.12 4.49 -322.94 -1.45 -37.57 16 21 C -0.31 -17.32 9.93 84.03 0.83 -16.49 16 22 H 0.06 3.44 7.83 -2.91 -0.02 3.41 16 23 C -0.11 -6.45 5.50 84.86 0.47 -5.98 16 24 N -0.98 -62.84 13.70 21.65 0.30 -62.54 16 25 Si 1.12 52.22 29.92 68.60 2.05 54.27 16 26 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 29 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.41 8.09 8.60 -92.71 -0.80 7.29 16 38 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.11 2.58 7.97 -2.39 -0.02 2.56 16 41 H 0.08 2.45 7.33 -2.39 -0.02 2.43 16 42 H 0.19 1.49 8.04 -2.91 -0.02 1.47 16 43 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 44 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 45 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 46 H 0.35 18.61 6.63 -92.71 -0.61 17.99 16 47 H 0.24 15.50 6.77 -92.71 -0.63 14.87 16 Total: -1.00 -87.00 392.40 3.26 -83.73 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.30 Total: 38.43 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 6.46 Total: 4.36 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -4.80 Total: -133.53 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -0.14 Total: -47.27 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.05 Total: 54.27 kcal Total: -87.00 3.26 -83.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134514430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.715 kcal (2) G-P(sol) polarization free energy of solvation -86.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds