Wall clock time and date at job start Fri Apr 10 2020 18:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47091 * 2 1 4 4 C 1.53001 * 109.47035 * 240.00206 * 2 1 3 5 5 C 1.52997 * 109.47049 * 174.99875 * 4 2 1 6 6 H 1.09001 * 109.46832 * 55.00084 * 5 4 2 7 7 C 1.53006 * 109.47127 * 174.99763 * 5 4 2 8 8 N 1.46492 * 109.47244 * 295.00135 * 5 4 2 9 9 C 1.34779 * 120.00234 * 155.00032 * 8 5 4 10 10 O 1.21283 * 119.99840 * 359.97438 * 9 8 5 11 11 C 1.50701 * 120.00108 * 179.97438 * 9 8 5 12 12 O 1.42903 * 109.47057 * 180.02562 * 11 9 8 13 13 C 1.42893 * 113.99954 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.46959 * 179.97438 * 13 12 11 15 15 C 1.38649 * 120.78960 * 269.71576 * 14 13 12 16 16 C 1.38210 * 119.15748 * 179.80118 * 15 14 13 17 17 N 1.31868 * 120.76734 * 0.48554 * 16 15 14 18 18 C 1.31865 * 121.72494 * 359.74527 * 17 16 15 19 19 C 1.38211 * 120.76498 * 0.02562 * 18 17 16 20 20 N 1.46501 * 109.47050 * 120.00322 * 2 1 3 21 21 C 1.36932 * 119.99774 * 274.99958 * 20 2 1 22 22 H 1.08001 * 120.00084 * 0.02562 * 21 20 2 23 23 C 1.38815 * 120.00137 * 180.02562 * 21 20 2 24 24 N 1.31623 * 119.99788 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00205 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47191 * 89.99861 * 25 23 21 27 27 H 1.48498 * 109.46938 * 209.99887 * 25 23 21 28 28 H 1.48496 * 109.47054 * 329.99683 * 25 23 21 29 29 H 1.09006 * 109.47111 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47307 * 299.99729 * 1 2 3 31 31 H 1.09000 * 109.47516 * 59.99924 * 1 2 3 32 32 H 1.08998 * 109.47252 * 55.00071 * 4 2 1 33 33 H 1.09006 * 109.47074 * 295.00264 * 4 2 1 34 34 H 1.09001 * 109.46801 * 300.00272 * 7 5 4 35 35 H 1.09001 * 109.46998 * 59.99868 * 7 5 4 36 36 H 1.09000 * 109.47050 * 180.02562 * 7 5 4 37 37 H 0.97005 * 120.00153 * 334.99565 * 8 5 4 38 38 H 1.08997 * 109.46862 * 299.99840 * 11 9 8 39 39 H 1.08993 * 109.46756 * 60.00116 * 11 9 8 40 40 H 1.09006 * 109.46770 * 299.99602 * 13 12 11 41 41 H 1.08995 * 109.47481 * 59.99283 * 13 12 11 42 42 H 1.07995 * 120.41832 * 359.97438 * 15 14 13 43 43 H 1.07997 * 119.61261 * 180.20305 * 16 15 14 44 44 H 1.08003 * 119.62076 * 180.02562 * 18 17 16 45 45 H 1.08000 * 120.41698 * 179.97438 * 19 18 17 46 46 H 0.97001 * 119.99978 * 95.00309 * 20 2 1 47 47 H 0.97000 * 120.00436 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 1 3.9953 -0.9922 -0.3869 7 6 4.0851 -1.4383 -2.4926 8 7 3.9479 0.7894 -1.4924 9 6 5.1611 1.2136 -1.0867 10 8 5.9356 0.4341 -0.5732 11 6 5.5554 2.6563 -1.2710 12 8 6.8772 2.8571 -0.7664 13 6 7.3500 4.1996 -0.8929 14 6 8.7452 4.2959 -0.3315 15 6 8.9531 4.6063 1.0037 16 6 10.2469 4.6817 1.4839 17 7 11.2759 4.4719 0.6863 18 6 11.1158 4.1792 -0.5895 19 6 9.8516 4.0820 -1.1394 20 7 2.0183 -0.6907 1.1961 21 6 2.1491 -0.0076 2.3757 22 1 1.8918 1.0402 2.4243 23 6 2.6123 -0.6618 3.5090 24 7 2.9253 -1.9389 3.4499 25 14 2.7900 0.2698 5.1183 26 1 1.5224 0.1775 5.8863 27 1 3.8950 -0.3228 5.9139 28 1 3.0939 1.6953 4.8340 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2057 34 1 3.8000 -2.4819 -2.3595 35 1 3.6545 -1.0593 -3.4194 36 1 5.1715 -1.3617 -2.5382 37 1 3.3284 1.4129 -1.9028 38 1 5.5298 2.9073 -2.3314 39 1 4.8583 3.2955 -0.7293 40 1 7.3610 4.4832 -1.9454 41 1 6.6902 4.8706 -0.3429 42 1 8.1147 4.7841 1.6607 43 1 10.4173 4.9197 2.5235 44 1 11.9828 4.0135 -1.2120 45 1 9.7270 3.8424 -2.1851 46 1 2.2491 -1.6318 1.1525 47 1 3.2486 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135778671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:24 Heat of formation + Delta-G solvation = -66.199543 kcal Electronic energy + Delta-G solvation = -26800.176791 eV Core-core repulsion = 22982.223143 eV Total energy + Delta-G solvation = -3817.953648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -41.18378 -40.83693 -38.87960 -38.04460 -36.01599 -34.23979 -34.00446 -32.29741 -32.17286 -30.44074 -29.17255 -27.58962 -27.12313 -25.65122 -24.44910 -23.00464 -22.69222 -21.63241 -21.16422 -19.29818 -18.51179 -17.86013 -17.70318 -17.44273 -16.94558 -16.84185 -16.55248 -16.44187 -15.62585 -15.57940 -15.46683 -15.04664 -14.77017 -14.57995 -14.48101 -14.27289 -13.99892 -13.60586 -13.38860 -13.26011 -13.09349 -12.93963 -12.79482 -12.72719 -12.66533 -12.47453 -12.21483 -12.20390 -11.81170 -11.54602 -11.40322 -10.92599 -10.88999 -10.76106 -10.64715 -10.49896 -10.11679 -9.96827 -8.93965 -7.91667 -5.16781 0.11430 0.16979 1.42053 1.44845 1.51728 1.70052 1.96118 2.56527 2.74748 3.17463 3.43314 3.55763 3.70292 3.76830 3.82632 3.91157 4.03931 4.10425 4.15270 4.17712 4.21844 4.31431 4.41529 4.42805 4.45305 4.56789 4.67731 4.70893 4.81222 4.84796 4.85641 4.96407 4.96869 5.05673 5.12519 5.24965 5.32078 5.36655 5.44737 5.52614 5.65249 5.68304 5.72877 6.01734 6.31615 6.69966 6.96893 7.37161 7.41552 8.18542 8.37028 9.32377 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.003270 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.757020 B = 8561.541270 C =10411.284316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.163 3.837 3 H 0.047 0.953 4 C -0.117 4.117 5 C 0.147 3.853 6 H 0.041 0.959 7 C -0.151 4.151 8 N -0.700 5.700 9 C 0.501 3.499 10 O -0.583 6.583 11 C 0.051 3.949 12 O -0.396 6.396 13 C 0.098 3.902 14 C -0.062 4.062 15 C -0.163 4.163 16 C 0.082 3.918 17 N -0.510 5.510 18 C 0.083 3.917 19 C -0.154 4.154 20 N -0.733 5.733 21 C -0.224 4.224 22 H 0.072 0.928 23 C -0.081 4.081 24 N -0.971 5.971 25 Si 0.961 3.039 26 H -0.285 1.285 27 H -0.303 1.303 28 H -0.271 1.271 29 H 0.039 0.961 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.034 0.966 37 H 0.416 0.584 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.146 0.854 43 H 0.174 0.826 44 H 0.181 0.819 45 H 0.159 0.841 46 H 0.368 0.632 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 16.094 -18.599 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.055 3.945 3 H 0.065 0.935 4 C -0.155 4.155 5 C 0.042 3.958 6 H 0.059 0.941 7 C -0.209 4.209 8 N -0.354 5.354 9 C 0.287 3.713 10 O -0.462 6.462 11 C -0.028 4.028 12 O -0.315 6.315 13 C 0.022 3.978 14 C -0.070 4.070 15 C -0.183 4.183 16 C -0.074 4.074 17 N -0.220 5.220 18 C -0.073 4.073 19 C -0.174 4.174 20 N -0.373 5.373 21 C -0.356 4.356 22 H 0.090 0.910 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.791 3.209 26 H -0.212 1.212 27 H -0.230 1.230 28 H -0.196 1.196 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.254 0.746 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.164 0.836 43 H 0.191 0.809 44 H 0.198 0.802 45 H 0.177 0.823 46 H 0.200 0.800 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.341 15.623 -17.710 24.452 hybrid contribution -0.874 -0.094 1.079 1.392 sum 5.467 15.529 -16.631 23.401 Atomic orbital electron populations 1.22312 0.97716 1.00782 1.00801 1.20552 0.92624 0.95418 0.85925 0.93500 1.22077 0.92545 1.02196 0.98695 1.20795 0.95659 0.81165 0.98132 0.94062 1.22080 1.00214 1.00213 0.98394 1.45693 1.15944 1.11509 1.62243 1.21025 0.82088 0.90851 0.77302 1.90741 1.52886 1.58260 1.44300 1.22357 0.85570 0.92275 1.02621 1.88066 1.30597 1.29032 1.83811 1.21568 0.90773 0.83464 1.02001 1.20322 0.95821 0.96545 0.94288 1.22366 0.99501 1.00407 0.95991 1.23128 0.88095 0.95584 1.00632 1.67684 1.36115 1.12016 1.06192 1.23253 0.97873 0.94809 0.91386 1.22385 0.92836 0.99592 1.02587 1.42633 1.78194 1.10087 1.06380 1.19523 1.33784 0.93877 0.88424 0.90963 1.25455 1.03641 0.96842 1.01306 1.69805 1.53212 1.10226 1.28997 0.85304 0.76765 0.78128 0.80669 1.21179 1.23049 1.19576 0.94154 0.95194 0.90260 0.87087 0.90852 0.91480 0.89495 0.94686 0.74646 0.85825 0.87826 0.88680 0.90068 0.83578 0.80910 0.80183 0.82300 0.80014 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 9.49 71.98 0.68 -4.20 16 2 C 0.16 5.72 2.84 44.99 0.13 5.85 16 3 H 0.05 1.63 7.56 -2.39 -0.02 1.62 16 4 C -0.12 -3.14 4.29 30.59 0.13 -3.01 16 5 C 0.15 4.59 2.52 44.99 0.11 4.70 16 6 H 0.04 1.86 7.05 -2.39 -0.02 1.84 16 7 C -0.15 -3.90 9.48 71.98 0.68 -3.21 16 8 N -0.70 -18.16 4.45 -442.54 -1.97 -20.13 16 9 C 0.50 16.10 7.87 87.66 0.69 16.79 16 10 O -0.58 -26.97 16.16 16.00 0.26 -26.71 16 11 C 0.05 1.06 6.42 71.24 0.46 1.52 16 12 O -0.40 -10.73 9.86 -129.94 -1.28 -12.01 16 13 C 0.10 1.69 6.11 71.24 0.44 2.13 16 14 C -0.06 -1.28 5.55 -19.67 -0.11 -1.39 16 15 C -0.16 -3.52 9.82 22.36 0.22 -3.30 16 16 C 0.08 1.81 11.18 84.68 0.95 2.75 16 17 N -0.51 -12.31 10.36 -195.84 -2.03 -14.33 16 18 C 0.08 1.65 11.18 84.68 0.95 2.60 16 19 C -0.15 -2.88 9.82 22.36 0.22 -2.66 16 20 N -0.73 -36.21 4.49 -322.94 -1.45 -37.66 16 21 C -0.22 -12.53 9.93 84.03 0.83 -11.69 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 24 N -0.97 -62.15 13.06 21.65 0.28 -61.87 16 25 Si 0.96 48.28 29.55 68.60 2.03 50.31 16 26 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 27 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 28 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 29 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.42 6.84 8.60 -92.70 -0.80 6.05 16 38 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 1.01 8.10 -2.38 -0.02 0.99 16 41 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 42 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 43 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 44 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 46 H 0.37 20.13 7.80 -92.71 -0.72 19.41 16 47 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -87.24 398.26 2.13 -85.11 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.56 Total: 34.79 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 6.85 Total: 2.52 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -5.16 Total: -133.99 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -1.02 Total: -38.73 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -87.24 2.13 -85.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135778671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.909 kcal (2) G-P(sol) polarization free energy of solvation -87.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds