Wall clock time and date at job start Fri Apr 10 2020 18:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46744 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.46807 * 174.99976 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.36943 * 119.99752 * 204.72207 * 8 5 4 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 5 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 5 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46494 * 109.47520 * 120.00284 * 2 1 3 18 18 C 1.34778 * 119.99979 * 275.00457 * 17 2 1 19 19 O 1.21284 * 119.99772 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00047 * 179.97438 * 18 17 2 21 21 O 1.42897 * 109.47115 * 179.97438 * 20 18 17 22 22 C 1.42900 * 114.00101 * 179.97438 * 21 20 18 23 23 C 1.50700 * 109.47174 * 179.97438 * 22 21 20 24 24 C 1.38652 * 120.79372 * 269.71942 * 23 22 21 25 25 C 1.38197 * 119.16319 * 179.80009 * 24 23 22 26 26 N 1.31876 * 120.76548 * 0.48850 * 25 24 23 27 27 C 1.31866 * 121.72037 * 359.73987 * 26 25 24 28 28 C 1.38200 * 120.76996 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46882 * 299.99772 * 1 2 3 31 31 H 1.09000 * 109.47436 * 59.99995 * 1 2 3 32 32 H 1.08993 * 109.47316 * 55.00068 * 4 2 1 33 33 H 1.08998 * 109.46869 * 294.99537 * 4 2 1 34 34 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 35 35 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 36 36 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 37 37 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 38 38 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 39 39 H 0.96999 * 120.00303 * 94.99255 * 17 2 1 40 40 H 1.08998 * 109.47094 * 299.99834 * 20 18 17 41 41 H 1.09004 * 109.47264 * 59.99904 * 20 18 17 42 42 H 1.08994 * 109.47325 * 300.00033 * 22 21 20 43 43 H 1.09005 * 109.46786 * 60.00213 * 22 21 20 44 44 H 1.08001 * 120.41543 * 0.02562 * 24 23 22 45 45 H 1.07998 * 119.61996 * 180.21072 * 25 24 23 46 46 H 1.08005 * 119.61462 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.42366 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1536 -1.3341 -0.1826 9 6 5.3967 -0.9892 0.2768 10 1 5.9411 -0.1828 -0.1920 11 6 5.9572 -1.6760 1.3450 12 7 5.2939 -2.6592 1.9160 13 14 7.6525 -1.2051 1.9721 14 1 7.5196 -0.1703 3.0289 15 1 8.3227 -2.4046 2.5354 16 1 8.4630 -0.6661 0.8506 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8590 1.1585 2.4115 20 6 2.6490 -0.7289 3.5876 21 8 2.6977 0.1894 4.6814 22 6 3.1623 -0.3867 5.9038 23 6 3.1735 0.6655 6.9826 24 6 4.2999 1.4431 7.2040 25 6 4.2717 2.4011 8.1996 26 7 3.1942 2.5728 8.9404 27 6 2.1070 1.8484 8.7610 28 6 2.0597 0.8749 7.7813 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -0.2616 -2.1370 33 1 1.7516 -1.7714 -1.2057 34 1 5.1507 -1.1476 -2.6703 35 1 3.7722 -2.2739 -2.6701 36 1 3.6263 -0.6885 -3.4659 37 1 3.6648 -2.0584 0.2384 38 1 5.6853 -3.1389 2.6627 39 1 2.2491 -1.6318 1.1525 40 1 1.9761 -1.5507 3.8324 41 1 3.6482 -1.1214 3.3985 42 1 2.4996 -1.2009 6.1967 43 1 4.1719 -0.7727 5.7627 44 1 5.1867 1.3045 6.6035 45 1 5.1437 3.0133 8.3762 46 1 1.2437 2.0174 9.3877 47 1 1.1665 0.2846 7.6396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135778673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:33 Heat of formation + Delta-G solvation = -35.685490 kcal Electronic energy + Delta-G solvation = -27630.734333 eV Core-core repulsion = 23814.103873 eV Total energy + Delta-G solvation = -3816.630460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18582 -39.33699 -37.55120 -36.52390 -34.17375 -33.15713 -32.33214 -31.24602 -30.79302 -28.69909 -27.83358 -26.37238 -25.85519 -23.72454 -23.49864 -21.99218 -21.29184 -20.26377 -19.59852 -17.29643 -17.15078 -16.61132 -16.47636 -16.18131 -15.63614 -15.59486 -15.36338 -14.81311 -14.16536 -14.00205 -13.84234 -13.76081 -13.66975 -13.53235 -12.98806 -12.75638 -12.65776 -12.21404 -12.03034 -11.84901 -11.78555 -11.68787 -11.50719 -11.43038 -11.03039 -10.88070 -10.77997 -10.39651 -10.29313 -9.94420 -9.79418 -9.74203 -9.54109 -9.45309 -9.18135 -9.09025 -9.01304 -8.36708 -7.01667 -5.88919 -3.14180 1.10279 1.11964 3.25289 3.36739 3.39762 3.42562 3.44871 3.82259 4.34147 4.41757 4.52335 4.68545 4.87472 5.04822 5.08027 5.09591 5.31821 5.34491 5.40474 5.46458 5.49645 5.54394 5.59061 5.61185 5.66893 5.75393 5.86689 5.93013 5.95522 5.99053 6.10844 6.13040 6.22121 6.31709 6.35080 6.39516 6.53576 6.57796 6.64482 6.82718 7.02298 7.14197 7.29028 7.63653 7.90098 8.18782 8.31616 8.92735 9.42931 9.97283 10.33125 11.33749 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003906 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.765576 B = 7166.877095 C = 8969.349793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.152 3.848 3 H 0.082 0.918 4 C -0.133 4.133 5 C 0.168 3.832 6 H 0.048 0.952 7 C -0.164 4.164 8 N -0.717 5.717 9 C -0.222 4.222 10 H 0.068 0.932 11 C -0.013 4.013 12 N -0.938 5.938 13 Si 0.898 3.102 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.284 1.284 17 N -0.696 5.696 18 C 0.532 3.468 19 O -0.546 6.546 20 C 0.040 3.960 21 O -0.359 6.359 22 C 0.098 3.902 23 C -0.037 4.037 24 C -0.149 4.149 25 C 0.094 3.906 26 N -0.486 5.486 27 C 0.092 3.908 28 C -0.152 4.152 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.378 0.622 38 H 0.253 0.747 39 H 0.405 0.595 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.138 0.862 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.294 1.324 4.856 9.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.066 0.934 7 C -0.224 4.224 8 N -0.360 5.360 9 C -0.353 4.353 10 H 0.086 0.914 11 C -0.208 4.208 12 N -0.589 5.589 13 Si 0.730 3.270 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.209 1.209 17 N -0.350 5.350 18 C 0.317 3.683 19 O -0.424 6.424 20 C -0.039 4.039 21 O -0.277 6.277 22 C 0.022 3.978 23 C -0.045 4.045 24 C -0.169 4.169 25 C -0.063 4.063 26 N -0.196 5.196 27 C -0.065 4.065 28 C -0.172 4.172 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.213 0.787 38 H 0.063 0.937 39 H 0.242 0.758 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.156 0.844 45 H 0.174 0.826 46 H 0.173 0.827 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.373 3.066 5.551 10.504 hybrid contribution 1.172 -1.537 -0.288 1.954 sum -7.202 1.529 5.263 9.050 Atomic orbital electron populations 1.22212 0.96323 1.01591 1.01958 1.20782 0.92430 0.97712 0.84359 0.89945 1.22204 0.97730 1.00630 0.96604 1.20297 0.89767 0.95911 0.88148 0.93375 1.22417 1.01528 1.00354 0.98067 1.42472 1.18512 1.40064 1.34925 1.19250 0.93015 1.12658 1.10382 0.91418 1.24563 0.98417 0.98667 0.99135 1.69600 1.38044 1.24714 1.26505 0.86309 0.84654 0.77178 0.78876 1.21803 1.21883 1.20928 1.45813 1.66401 1.14397 1.08419 1.19915 0.76960 0.87029 0.84356 1.90642 1.50423 1.15960 1.85380 1.22377 1.04133 0.91519 0.85909 1.87994 1.87049 1.35698 1.17000 1.21314 1.00084 0.92956 0.83483 1.20061 0.93668 0.96016 0.94765 1.22174 0.99542 0.96241 0.98946 1.22748 0.96309 0.95652 0.91545 1.67647 1.00184 1.25292 1.26437 1.22719 0.96105 0.91751 0.95929 1.22080 0.98687 0.99743 0.96709 0.92813 0.92419 0.92134 0.90777 0.91702 0.92880 0.93590 0.94552 0.78722 0.93709 0.75783 0.91293 0.87178 0.92030 0.91499 0.84410 0.82621 0.82733 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.48 37.16 0.35 -1.81 16 2 C 0.15 2.41 2.57 -67.93 -0.17 2.24 16 3 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.13 -1.93 4.43 -26.73 -0.12 -2.05 16 5 C 0.17 3.04 2.89 -67.93 -0.20 2.85 16 6 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 7 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 8 N -0.72 -15.57 3.84 -53.43 -0.21 -15.77 16 9 C -0.22 -5.60 9.93 -15.06 -0.15 -5.75 16 10 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 11 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 12 N -0.94 -24.10 12.83 55.49 0.71 -23.39 16 13 Si 0.90 21.19 29.55 -169.99 -5.02 16.17 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 N -0.70 -12.21 3.80 -53.81 -0.20 -12.42 16 18 C 0.53 10.64 7.87 -10.99 -0.09 10.56 16 19 O -0.55 -12.73 16.16 -14.36 -0.23 -12.97 16 20 C 0.04 0.73 6.42 36.00 0.23 0.96 16 21 O -0.36 -6.68 9.86 -55.14 -0.54 -7.22 16 22 C 0.10 1.43 6.11 36.01 0.22 1.65 16 23 C -0.04 -0.51 5.55 -104.32 -0.58 -1.09 16 24 C -0.15 -2.01 9.82 -39.44 -0.39 -2.40 16 25 C 0.09 1.19 11.18 -17.55 -0.20 1.00 16 26 N -0.49 -6.56 10.36 -13.25 -0.14 -6.70 16 27 C 0.09 1.09 11.18 -17.55 -0.20 0.90 16 28 C -0.15 -1.86 9.82 -39.44 -0.39 -2.25 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.38 8.33 5.70 -40.82 -0.23 8.09 16 38 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 39 H 0.40 7.02 6.51 -40.82 -0.27 6.75 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.11 2.24 7.91 -51.93 -0.41 1.83 16 42 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 44 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 46 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 47 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -30.69 393.61 -8.72 -39.41 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -7.61 Total: 14.97 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.41 Total: 1.98 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.16 Total: -58.28 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.78 Total: -20.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.69 -8.72 -39.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135778673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.727 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds