Wall clock time and date at job start Fri Apr 10 2020 18:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46744 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.46807 * 174.99976 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.36943 * 119.99752 * 204.72207 * 8 5 4 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 5 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 5 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48496 * 109.47166 * 329.99846 * 13 11 9 17 17 N 1.46494 * 109.47520 * 120.00284 * 2 1 3 18 18 C 1.34778 * 119.99979 * 275.00457 * 17 2 1 19 19 O 1.21284 * 119.99772 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00047 * 179.97438 * 18 17 2 21 21 O 1.42897 * 109.47115 * 179.97438 * 20 18 17 22 22 C 1.42900 * 114.00101 * 179.97438 * 21 20 18 23 23 C 1.50700 * 109.47174 * 179.97438 * 22 21 20 24 24 C 1.38652 * 120.79372 * 269.71942 * 23 22 21 25 25 C 1.38197 * 119.16319 * 179.80009 * 24 23 22 26 26 N 1.31876 * 120.76548 * 0.48850 * 25 24 23 27 27 C 1.31866 * 121.72037 * 359.73987 * 26 25 24 28 28 C 1.38200 * 120.76996 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46882 * 299.99772 * 1 2 3 31 31 H 1.09000 * 109.47436 * 59.99995 * 1 2 3 32 32 H 1.08993 * 109.47316 * 55.00068 * 4 2 1 33 33 H 1.08998 * 109.46869 * 294.99537 * 4 2 1 34 34 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 35 35 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 36 36 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 37 37 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 38 38 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 39 39 H 0.96999 * 120.00303 * 94.99255 * 17 2 1 40 40 H 1.08998 * 109.47094 * 299.99834 * 20 18 17 41 41 H 1.09004 * 109.47264 * 59.99904 * 20 18 17 42 42 H 1.08994 * 109.47325 * 300.00033 * 22 21 20 43 43 H 1.09005 * 109.46786 * 60.00213 * 22 21 20 44 44 H 1.08001 * 120.41543 * 0.02562 * 24 23 22 45 45 H 1.07998 * 119.61996 * 180.21072 * 25 24 23 46 46 H 1.08005 * 119.61462 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.42366 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1536 -1.3341 -0.1826 9 6 5.3967 -0.9892 0.2768 10 1 5.9411 -0.1828 -0.1920 11 6 5.9572 -1.6760 1.3450 12 7 5.2939 -2.6592 1.9160 13 14 7.6525 -1.2051 1.9721 14 1 7.5196 -0.1703 3.0289 15 1 8.3227 -2.4046 2.5354 16 1 8.4630 -0.6661 0.8506 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8590 1.1585 2.4115 20 6 2.6490 -0.7289 3.5876 21 8 2.6977 0.1894 4.6814 22 6 3.1623 -0.3867 5.9038 23 6 3.1735 0.6655 6.9826 24 6 4.2999 1.4431 7.2040 25 6 4.2717 2.4011 8.1996 26 7 3.1942 2.5728 8.9404 27 6 2.1070 1.8484 8.7610 28 6 2.0597 0.8749 7.7813 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -0.2616 -2.1370 33 1 1.7516 -1.7714 -1.2057 34 1 5.1507 -1.1476 -2.6703 35 1 3.7722 -2.2739 -2.6701 36 1 3.6263 -0.6885 -3.4659 37 1 3.6648 -2.0584 0.2384 38 1 5.6853 -3.1389 2.6627 39 1 2.2491 -1.6318 1.1525 40 1 1.9761 -1.5507 3.8324 41 1 3.6482 -1.1214 3.3985 42 1 2.4996 -1.2009 6.1967 43 1 4.1719 -0.7727 5.7627 44 1 5.1867 1.3045 6.6035 45 1 5.1437 3.0133 8.3762 46 1 1.2437 2.0174 9.3877 47 1 1.1665 0.2846 7.6396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135778673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:32 Heat of formation + Delta-G solvation = -53.986985 kcal Electronic energy + Delta-G solvation = -27631.527945 eV Core-core repulsion = 23814.103873 eV Total energy + Delta-G solvation = -3817.424072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.19490 -40.80053 -38.88676 -38.02513 -35.76622 -34.25314 -34.02811 -32.26680 -32.19515 -30.34905 -29.10426 -27.59847 -27.09519 -25.57708 -24.45825 -23.01851 -22.65565 -21.69761 -21.10063 -19.12328 -18.44269 -17.83584 -17.71147 -17.40498 -16.99044 -16.72871 -16.55434 -16.50266 -15.65801 -15.51945 -15.34742 -15.06773 -14.78029 -14.59490 -14.34610 -14.19748 -13.94291 -13.58863 -13.37369 -13.29933 -13.08563 -12.89428 -12.78483 -12.77312 -12.57582 -12.49444 -12.28122 -12.15315 -11.71178 -11.60047 -11.40204 -10.92280 -10.89172 -10.74451 -10.61111 -10.52864 -10.13406 -9.84792 -8.82689 -7.86899 -5.08595 0.08571 0.15240 1.44614 1.48767 1.52143 1.74479 2.05719 2.59319 2.76261 3.16473 3.46616 3.53924 3.69602 3.72798 3.82081 3.96519 4.06156 4.10619 4.14311 4.17071 4.23075 4.37047 4.38501 4.40638 4.56788 4.61676 4.64343 4.70318 4.84082 4.84517 4.88654 4.93499 4.94362 5.09118 5.14999 5.16670 5.32110 5.37785 5.42876 5.60315 5.63796 5.70280 5.76299 5.98914 6.37020 6.72328 6.93990 7.41648 7.45919 8.17476 8.45763 9.34516 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003906 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.765576 B = 7166.877095 C = 8969.349793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.052 0.948 4 C -0.119 4.119 5 C 0.161 3.839 6 H 0.027 0.973 7 C -0.154 4.154 8 N -0.719 5.719 9 C -0.226 4.226 10 H 0.054 0.946 11 C -0.049 4.049 12 N -0.945 5.945 13 Si 0.938 3.062 14 H -0.298 1.298 15 H -0.294 1.294 16 H -0.285 1.285 17 N -0.686 5.686 18 C 0.522 3.478 19 O -0.587 6.587 20 C 0.048 3.952 21 O -0.385 6.385 22 C 0.096 3.904 23 C -0.057 4.057 24 C -0.167 4.167 25 C 0.089 3.911 26 N -0.505 5.505 27 C 0.090 3.910 28 C -0.153 4.153 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.376 0.624 38 H 0.250 0.750 39 H 0.407 0.593 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.136 0.864 45 H 0.178 0.822 46 H 0.187 0.813 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.010 0.632 4.352 10.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.071 0.929 4 C -0.157 4.157 5 C 0.052 3.948 6 H 0.045 0.955 7 C -0.214 4.214 8 N -0.362 5.362 9 C -0.358 4.358 10 H 0.072 0.928 11 C -0.243 4.243 12 N -0.596 5.596 13 Si 0.770 3.230 14 H -0.226 1.226 15 H -0.220 1.220 16 H -0.211 1.211 17 N -0.339 5.339 18 C 0.309 3.691 19 O -0.469 6.469 20 C -0.031 4.031 21 O -0.304 6.304 22 C 0.020 3.980 23 C -0.066 4.066 24 C -0.186 4.186 25 C -0.067 4.067 26 N -0.214 5.214 27 C -0.067 4.067 28 C -0.173 4.173 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.211 0.789 38 H 0.059 0.941 39 H 0.245 0.755 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.154 0.846 45 H 0.195 0.805 46 H 0.204 0.796 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.092 2.357 5.005 11.509 hybrid contribution 1.701 -1.283 -0.161 2.136 sum -8.392 1.074 4.844 9.748 Atomic orbital electron populations 1.22105 0.93756 1.02864 1.02228 1.20943 0.94378 0.96142 0.84285 0.92946 1.22122 0.94714 1.01707 0.97137 1.20502 0.92253 0.94353 0.87658 0.95494 1.22270 1.00031 1.00901 0.98164 1.42507 1.17505 1.40254 1.35980 1.19329 0.94312 1.11976 1.10225 0.92793 1.24945 1.00262 0.99327 0.99769 1.69648 1.38367 1.24994 1.26554 0.85687 0.82786 0.76498 0.78043 1.22635 1.22003 1.21081 1.45861 1.65321 1.14349 1.08385 1.20336 0.76614 0.86693 0.85466 1.90610 1.52544 1.17610 1.86091 1.22269 1.03305 0.91984 0.85535 1.87960 1.87349 1.36928 1.18178 1.21490 1.00311 0.93934 0.82280 1.20216 0.94670 0.96471 0.95213 1.22309 0.99745 0.96950 0.99635 1.23097 0.97015 0.95545 0.91055 1.67716 1.00838 1.25989 1.26892 1.23280 0.96558 0.90928 0.95885 1.22358 0.98832 0.99904 0.96161 0.90953 0.94441 0.89609 0.87328 0.90175 0.95335 0.93167 0.91297 0.78884 0.94073 0.75510 0.88085 0.89559 0.89320 0.92142 0.84596 0.80476 0.79563 0.82391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.48 71.98 0.68 -2.99 16 2 C 0.15 4.48 2.57 44.99 0.12 4.59 16 3 H 0.05 1.93 7.58 -2.39 -0.02 1.92 16 4 C -0.12 -3.12 4.43 30.60 0.14 -2.98 16 5 C 0.16 5.62 2.89 44.99 0.13 5.75 16 6 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 7 C -0.15 -4.82 9.49 71.98 0.68 -4.14 16 8 N -0.72 -31.09 3.84 -322.94 -1.24 -32.33 16 9 C -0.23 -11.54 9.93 84.03 0.83 -10.71 16 10 H 0.05 2.86 7.83 -2.91 -0.02 2.84 16 11 C -0.05 -2.56 5.50 84.86 0.47 -2.09 16 12 N -0.94 -48.63 12.83 21.65 0.28 -48.36 16 13 Si 0.94 44.11 29.55 68.60 2.03 46.13 16 14 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 16 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 17 N -0.69 -23.81 3.80 -442.53 -1.68 -25.49 16 18 C 0.52 21.20 7.87 87.66 0.69 21.89 16 19 O -0.59 -28.14 16.16 16.00 0.26 -27.88 16 20 C 0.05 1.77 6.42 71.24 0.46 2.23 16 21 O -0.39 -14.51 9.86 -129.94 -1.28 -15.79 16 22 C 0.10 2.78 6.11 71.24 0.44 3.22 16 23 C -0.06 -1.59 5.55 -19.67 -0.11 -1.70 16 24 C -0.17 -4.56 9.82 22.36 0.22 -4.35 16 25 C 0.09 2.23 11.18 84.68 0.95 3.17 16 26 N -0.50 -13.12 10.36 -195.85 -2.03 -15.15 16 27 C 0.09 1.99 11.18 84.68 0.95 2.94 16 28 C -0.15 -3.53 9.82 22.36 0.22 -3.32 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.38 16.36 5.70 -92.71 -0.53 15.83 16 38 H 0.25 12.76 8.31 -92.71 -0.77 11.99 16 39 H 0.41 13.78 6.51 -92.71 -0.60 13.17 16 40 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.09 3.60 7.91 -2.38 -0.02 3.58 16 42 H 0.09 2.03 8.10 -2.39 -0.02 2.01 16 43 H 0.06 1.79 8.10 -2.38 -0.02 1.77 16 44 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 45 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 46 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 47 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -67.64 393.61 3.02 -64.63 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -0.17 Total: 42.71 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.85 Total: 11.53 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -4.67 Total: -121.32 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -1.02 Total: -43.67 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -67.64 3.02 -64.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135778673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.638 kcal (2) G-P(sol) polarization free energy of solvation -67.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds