Wall clock time and date at job start Fri Apr 10 2020 18:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46715 * 2 1 4 4 C 1.52990 * 109.47142 * 119.99812 * 2 1 3 5 5 C 1.52999 * 109.47163 * 184.99811 * 4 2 1 6 6 H 1.09002 * 109.47720 * 305.00333 * 5 4 2 7 7 C 1.53004 * 109.47399 * 184.99945 * 5 4 2 8 8 N 1.46501 * 109.46875 * 65.00456 * 5 4 2 9 9 C 1.34776 * 120.00069 * 204.99888 * 8 5 4 10 10 O 1.21284 * 119.99916 * 0.02562 * 9 8 5 11 11 C 1.50699 * 120.00251 * 179.97438 * 9 8 5 12 12 O 1.42899 * 109.47367 * 180.02562 * 11 9 8 13 13 C 1.42904 * 114.00002 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.46984 * 179.97438 * 13 12 11 15 15 C 1.38654 * 120.78409 * 90.00116 * 14 13 12 16 16 C 1.38209 * 119.15786 * 180.02562 * 15 14 13 17 17 N 1.31870 * 120.76375 * 0.26353 * 16 15 14 18 18 C 1.31872 * 121.72489 * 359.46946 * 17 16 15 19 19 C 1.38200 * 120.76402 * 0.52682 * 18 17 16 20 20 N 1.46500 * 109.47018 * 240.00177 * 2 1 3 21 21 C 1.36940 * 120.00057 * 84.99939 * 20 2 1 22 22 H 1.08003 * 119.99955 * 359.97438 * 21 20 2 23 23 C 1.38814 * 120.00131 * 179.97438 * 21 20 2 24 24 N 1.31616 * 120.00266 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99656 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47725 * 89.99902 * 25 23 21 27 27 H 1.48507 * 109.46768 * 209.99808 * 25 23 21 28 28 H 1.48499 * 109.47235 * 329.99069 * 25 23 21 29 29 H 1.09000 * 109.46715 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47083 * 299.99965 * 1 2 3 31 31 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 32 32 H 1.09001 * 109.47168 * 65.00678 * 4 2 1 33 33 H 1.08996 * 109.47333 * 304.99976 * 4 2 1 34 34 H 1.08994 * 109.47412 * 180.02562 * 7 5 4 35 35 H 1.08999 * 109.47329 * 300.00421 * 7 5 4 36 36 H 1.09004 * 109.46786 * 60.00683 * 7 5 4 37 37 H 0.97000 * 120.00586 * 24.99789 * 8 5 4 38 38 H 1.09004 * 109.47221 * 59.99899 * 11 9 8 39 39 H 1.09005 * 109.47075 * 300.00164 * 11 9 8 40 40 H 1.08996 * 109.46864 * 60.00311 * 13 12 11 41 41 H 1.08997 * 109.47440 * 300.00110 * 13 12 11 42 42 H 1.07995 * 120.42251 * 0.04566 * 15 14 13 43 43 H 1.08002 * 119.61346 * 179.97438 * 16 15 14 44 44 H 1.08004 * 119.61160 * 180.27376 * 18 17 16 45 45 H 1.08004 * 120.41549 * 179.76941 * 19 18 17 46 46 H 0.97000 * 119.99963 * 264.99751 * 20 2 1 47 47 H 0.97000 * 119.99910 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9955 -0.9922 0.3867 7 6 4.0852 -1.4382 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1611 1.2136 1.0867 10 8 5.9356 0.4342 0.5731 11 6 5.5550 2.6566 1.2701 12 8 6.8764 2.8577 0.7645 13 6 7.3487 4.2006 0.8902 14 6 8.7441 4.2968 0.3290 15 6 8.9520 4.6005 -1.0078 16 6 10.2459 4.6797 -1.4870 17 7 11.2746 4.4653 -0.6902 18 6 11.1146 4.1793 0.5872 19 6 9.8503 4.0832 1.1370 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3758 22 1 1.8918 1.0404 -2.4244 23 6 2.6123 -0.6616 -3.5091 24 7 2.7375 -0.0052 -4.6430 25 14 3.0565 -2.4741 -3.4252 26 1 1.8595 -3.2926 -3.7451 27 1 4.1324 -2.7659 -4.4064 28 1 3.5312 -2.8046 -2.0575 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7517 -1.7715 1.2055 33 1 1.6054 -0.2617 2.1369 34 1 5.1714 -1.3610 2.5386 35 1 3.6547 -1.0593 3.4193 36 1 3.8002 -2.4819 2.3594 37 1 3.3285 1.4130 1.9028 38 1 5.5290 2.9085 2.3303 39 1 4.8578 3.2953 0.7277 40 1 7.3603 4.4846 1.9424 41 1 6.6885 4.8710 0.3401 42 1 8.1135 4.7733 -1.6661 43 1 10.4164 4.9154 -2.5271 44 1 11.9815 4.0144 1.2098 45 1 9.7257 3.8450 2.1831 46 1 2.2491 -1.6317 -1.1527 47 1 3.0608 -0.4624 -5.4350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135778674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:36 Heat of formation + Delta-G solvation = -36.089921 kcal Electronic energy + Delta-G solvation = -26847.055399 eV Core-core repulsion = 23030.407402 eV Total energy + Delta-G solvation = -3816.647997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36670 -39.69849 -37.89936 -36.77502 -34.55692 -33.40100 -32.19111 -31.39195 -31.08266 -29.26241 -28.28613 -26.49018 -26.22879 -23.65725 -23.31185 -22.21989 -21.51497 -20.42566 -19.83878 -17.78176 -17.43776 -16.91024 -16.87456 -16.49876 -15.94573 -15.77075 -15.68607 -14.80364 -14.45001 -14.29719 -13.99920 -13.91607 -13.78446 -13.61226 -13.19711 -12.99480 -12.64191 -12.50606 -12.33049 -12.08761 -11.99150 -11.93519 -11.72352 -11.71140 -11.22658 -10.91826 -10.67115 -10.49554 -10.27276 -9.98416 -9.95789 -9.93538 -9.68404 -9.54257 -9.49429 -9.32336 -8.88889 -8.80137 -7.22356 -5.72195 -3.07035 0.93019 0.96507 2.84088 2.93049 3.42941 3.46070 3.51496 3.60320 4.00043 4.29020 4.46729 4.52655 4.65049 4.78878 4.85464 4.91236 4.95573 5.00862 5.08103 5.11082 5.18099 5.24435 5.30728 5.42843 5.51591 5.58984 5.59745 5.75042 5.75336 5.80276 5.85887 5.99020 6.10231 6.16788 6.23681 6.30302 6.41198 6.49632 6.52725 6.69192 6.78019 6.85784 6.97427 7.71142 7.77588 8.02282 8.46620 8.49212 9.25143 9.98288 10.17080 11.46408 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.003132 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.506717 B = 8936.913826 C =10252.587602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.054 0.946 4 C -0.134 4.134 5 C 0.145 3.855 6 H 0.100 0.900 7 C -0.162 4.162 8 N -0.716 5.716 9 C 0.515 3.485 10 O -0.513 6.513 11 C 0.045 3.955 12 O -0.353 6.353 13 C 0.099 3.901 14 C -0.044 4.044 15 C -0.147 4.147 16 C 0.096 3.904 17 N -0.483 5.483 18 C 0.093 3.907 19 C -0.152 4.152 20 N -0.745 5.745 21 C -0.239 4.239 22 H 0.087 0.913 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.882 3.118 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.276 1.276 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.395 0.605 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.139 0.861 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.135 0.865 46 H 0.360 0.640 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 9.660 18.620 22.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.173 4.173 5 C 0.041 3.959 6 H 0.118 0.882 7 C -0.220 4.220 8 N -0.370 5.370 9 C 0.299 3.701 10 O -0.386 6.386 11 C -0.035 4.035 12 O -0.271 6.271 13 C 0.022 3.978 14 C -0.052 4.052 15 C -0.167 4.167 16 C -0.060 4.060 17 N -0.193 5.193 18 C -0.064 4.064 19 C -0.172 4.172 20 N -0.389 5.389 21 C -0.369 4.369 22 H 0.105 0.895 23 C -0.189 4.189 24 N -0.583 5.583 25 Si 0.713 3.287 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.202 1.202 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.229 0.771 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.157 0.843 43 H 0.176 0.824 44 H 0.174 0.826 45 H 0.153 0.847 46 H 0.193 0.807 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.253 9.161 17.622 21.507 hybrid contribution -1.133 -0.875 0.517 1.522 sum 7.120 8.286 18.138 21.175 Atomic orbital electron populations 1.22426 0.98987 1.00861 1.00302 1.20191 0.91759 0.95792 0.85533 0.92838 1.22220 0.93730 1.02198 0.99152 1.21003 0.95026 0.80192 0.99711 0.88189 1.22195 1.01679 1.00070 0.98086 1.45809 1.16214 1.11632 1.63301 1.20034 0.82263 0.89221 0.78564 1.90757 1.50797 1.56035 1.41057 1.22244 0.86064 0.95633 0.99574 1.88119 1.29450 1.26562 1.82959 1.21360 0.91501 0.85026 0.99868 1.19966 0.94590 0.96613 0.94062 1.22171 0.99273 0.99890 0.95390 1.22809 0.87989 0.95403 0.99821 1.67666 1.35460 1.10983 1.05147 1.22754 0.96559 0.95506 0.91554 1.22063 0.93248 1.00434 1.01432 1.42776 1.79583 1.09363 1.07144 1.18986 1.36934 0.95411 0.85568 0.89490 1.24633 1.01284 0.97423 0.95602 1.69689 1.52747 1.35557 1.00263 0.86574 0.77954 0.86951 0.77219 1.21288 1.21799 1.20241 0.93620 0.94377 0.92415 0.90693 0.91508 0.92408 0.92895 0.91817 0.77126 0.90521 0.89899 0.91851 0.91509 0.84268 0.82407 0.82644 0.84694 0.80750 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.49 37.16 0.35 -2.33 16 2 C 0.18 3.12 2.84 -67.93 -0.19 2.92 16 3 H 0.05 0.97 7.56 -51.93 -0.39 0.58 16 4 C -0.13 -1.84 4.29 -26.74 -0.11 -1.96 16 5 C 0.14 2.18 2.52 -67.93 -0.17 2.01 16 6 H 0.10 2.01 7.05 -51.93 -0.37 1.64 16 7 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 8 N -0.72 -9.60 4.45 -53.80 -0.24 -9.84 16 9 C 0.51 8.27 7.87 -10.99 -0.09 8.18 16 10 O -0.51 -11.10 16.16 -14.36 -0.23 -11.34 16 11 C 0.04 0.53 6.42 36.01 0.23 0.76 16 12 O -0.35 -5.04 9.86 -55.14 -0.54 -5.58 16 13 C 0.10 0.99 6.11 36.01 0.22 1.21 16 14 C -0.04 -0.49 5.55 -104.32 -0.58 -1.07 16 15 C -0.15 -1.64 9.82 -39.44 -0.39 -2.03 16 16 C 0.10 1.07 11.18 -17.55 -0.20 0.88 16 17 N -0.48 -5.89 10.36 -13.25 -0.14 -6.03 16 18 C 0.09 0.96 11.18 -17.55 -0.20 0.77 16 19 C -0.15 -1.52 9.82 -39.45 -0.39 -1.91 16 20 N -0.75 -17.16 4.30 -53.43 -0.23 -17.39 16 21 C -0.24 -6.71 10.41 -15.06 -0.16 -6.87 16 22 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.89 13.97 55.49 0.78 -29.11 16 25 Si 0.88 22.92 27.74 -169.99 -4.71 18.20 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 28 H -0.28 -6.81 6.52 56.52 0.37 -6.45 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 3.84 8.60 -40.82 -0.35 3.49 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 41 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 45 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.36 8.32 5.66 -40.82 -0.23 8.09 16 47 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -38.11 395.15 -8.47 -46.58 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -7.69 Total: 9.60 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.41 Total: -1.05 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.17 Total: -62.36 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.78 Total: -16.92 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.11 -8.47 -46.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135778674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.485 kcal (2) G-P(sol) polarization free energy of solvation -38.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds