Wall clock time and date at job start Fri Apr 10 2020 18:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46715 * 2 1 4 4 C 1.52990 * 109.47142 * 119.99812 * 2 1 3 5 5 C 1.52999 * 109.47163 * 184.99811 * 4 2 1 6 6 H 1.09002 * 109.47720 * 305.00333 * 5 4 2 7 7 C 1.53004 * 109.47399 * 184.99945 * 5 4 2 8 8 N 1.46501 * 109.46875 * 65.00456 * 5 4 2 9 9 C 1.34776 * 120.00069 * 204.99888 * 8 5 4 10 10 O 1.21284 * 119.99916 * 0.02562 * 9 8 5 11 11 C 1.50699 * 120.00251 * 179.97438 * 9 8 5 12 12 O 1.42899 * 109.47367 * 180.02562 * 11 9 8 13 13 C 1.42904 * 114.00002 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.46984 * 179.97438 * 13 12 11 15 15 C 1.38654 * 120.78409 * 90.00116 * 14 13 12 16 16 C 1.38209 * 119.15786 * 180.02562 * 15 14 13 17 17 N 1.31870 * 120.76375 * 0.26353 * 16 15 14 18 18 C 1.31872 * 121.72489 * 359.46946 * 17 16 15 19 19 C 1.38200 * 120.76402 * 0.52682 * 18 17 16 20 20 N 1.46500 * 109.47018 * 240.00177 * 2 1 3 21 21 C 1.36940 * 120.00057 * 84.99939 * 20 2 1 22 22 H 1.08003 * 119.99955 * 359.97438 * 21 20 2 23 23 C 1.38814 * 120.00131 * 179.97438 * 21 20 2 24 24 N 1.31616 * 120.00266 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99656 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47725 * 89.99902 * 25 23 21 27 27 H 1.48507 * 109.46768 * 209.99808 * 25 23 21 28 28 H 1.48499 * 109.47235 * 329.99069 * 25 23 21 29 29 H 1.09000 * 109.46715 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47083 * 299.99965 * 1 2 3 31 31 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 32 32 H 1.09001 * 109.47168 * 65.00678 * 4 2 1 33 33 H 1.08996 * 109.47333 * 304.99976 * 4 2 1 34 34 H 1.08994 * 109.47412 * 180.02562 * 7 5 4 35 35 H 1.08999 * 109.47329 * 300.00421 * 7 5 4 36 36 H 1.09004 * 109.46786 * 60.00683 * 7 5 4 37 37 H 0.97000 * 120.00586 * 24.99789 * 8 5 4 38 38 H 1.09004 * 109.47221 * 59.99899 * 11 9 8 39 39 H 1.09005 * 109.47075 * 300.00164 * 11 9 8 40 40 H 1.08996 * 109.46864 * 60.00311 * 13 12 11 41 41 H 1.08997 * 109.47440 * 300.00110 * 13 12 11 42 42 H 1.07995 * 120.42251 * 0.04566 * 15 14 13 43 43 H 1.08002 * 119.61346 * 179.97438 * 16 15 14 44 44 H 1.08004 * 119.61160 * 180.27376 * 18 17 16 45 45 H 1.08004 * 120.41549 * 179.76941 * 19 18 17 46 46 H 0.97000 * 119.99963 * 264.99751 * 20 2 1 47 47 H 0.97000 * 119.99910 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 1 3.9955 -0.9922 0.3867 7 6 4.0852 -1.4382 2.4924 8 7 3.9479 0.7894 1.4924 9 6 5.1611 1.2136 1.0867 10 8 5.9356 0.4342 0.5731 11 6 5.5550 2.6566 1.2701 12 8 6.8764 2.8577 0.7645 13 6 7.3487 4.2006 0.8902 14 6 8.7441 4.2968 0.3290 15 6 8.9520 4.6005 -1.0078 16 6 10.2459 4.6797 -1.4870 17 7 11.2746 4.4653 -0.6902 18 6 11.1146 4.1793 0.5872 19 6 9.8503 4.0832 1.1370 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3758 22 1 1.8918 1.0404 -2.4244 23 6 2.6123 -0.6616 -3.5091 24 7 2.7375 -0.0052 -4.6430 25 14 3.0565 -2.4741 -3.4252 26 1 1.8595 -3.2926 -3.7451 27 1 4.1324 -2.7659 -4.4064 28 1 3.5312 -2.8046 -2.0575 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7517 -1.7715 1.2055 33 1 1.6054 -0.2617 2.1369 34 1 5.1714 -1.3610 2.5386 35 1 3.6547 -1.0593 3.4193 36 1 3.8002 -2.4819 2.3594 37 1 3.3285 1.4130 1.9028 38 1 5.5290 2.9085 2.3303 39 1 4.8578 3.2953 0.7277 40 1 7.3603 4.4846 1.9424 41 1 6.6885 4.8710 0.3401 42 1 8.1135 4.7733 -1.6661 43 1 10.4164 4.9154 -2.5271 44 1 11.9815 4.0144 1.2098 45 1 9.7257 3.8450 2.1831 46 1 2.2491 -1.6317 -1.1527 47 1 3.0608 -0.4624 -5.4350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135778674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:34 Heat of formation + Delta-G solvation = -63.897893 kcal Electronic energy + Delta-G solvation = -26848.261243 eV Core-core repulsion = 23030.407402 eV Total energy + Delta-G solvation = -3817.853841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.18996 -40.86288 -38.92426 -38.13553 -36.09789 -34.24559 -34.08139 -32.43081 -32.17427 -31.01387 -29.18805 -27.60909 -27.13371 -25.33828 -24.44950 -23.00789 -22.69196 -21.73481 -21.26189 -19.72726 -18.54460 -17.87962 -17.70786 -17.45801 -16.99088 -16.85629 -16.54936 -16.47592 -15.94933 -15.51530 -15.23886 -15.11213 -14.76873 -14.62671 -14.55848 -14.31249 -14.01987 -14.01121 -13.43988 -13.36630 -13.12057 -13.01842 -12.82471 -12.73864 -12.63175 -12.47592 -12.39094 -11.99451 -11.86622 -11.68328 -11.43649 -10.97411 -10.91595 -10.77096 -10.66036 -10.50489 -10.11852 -9.99576 -9.26434 -8.02058 -5.31271 0.11063 0.16861 1.31981 1.37386 1.42241 1.67118 1.94606 2.47351 2.74070 3.16566 3.31666 3.55559 3.66586 3.68806 3.76529 3.81575 3.91980 4.09177 4.10993 4.17543 4.20112 4.30374 4.36530 4.41068 4.44504 4.53326 4.67085 4.67650 4.78178 4.83321 4.85563 4.92313 4.96356 5.01803 5.09711 5.21819 5.32005 5.33642 5.39575 5.62205 5.63021 5.72744 5.80243 6.00328 6.23263 6.66821 6.96684 7.11384 7.37906 7.91011 8.05330 9.20138 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.003132 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.506717 B = 8936.913826 C =10252.587602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.047 0.953 4 C -0.120 4.120 5 C 0.142 3.858 6 H 0.043 0.957 7 C -0.152 4.152 8 N -0.701 5.701 9 C 0.502 3.498 10 O -0.582 6.582 11 C 0.049 3.951 12 O -0.396 6.396 13 C 0.098 3.902 14 C -0.062 4.062 15 C -0.164 4.164 16 C 0.082 3.918 17 N -0.509 5.509 18 C 0.084 3.916 19 C -0.153 4.153 20 N -0.750 5.750 21 C -0.211 4.211 22 H 0.057 0.943 23 C -0.067 4.067 24 N -0.986 5.986 25 Si 0.945 3.055 26 H -0.274 1.274 27 H -0.305 1.305 28 H -0.259 1.259 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.025 0.975 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.417 0.583 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.173 0.827 44 H 0.182 0.818 45 H 0.161 0.839 46 H 0.360 0.640 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 9.618 22.654 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.158 4.158 5 C 0.037 3.963 6 H 0.061 0.939 7 C -0.210 4.210 8 N -0.355 5.355 9 C 0.289 3.711 10 O -0.461 6.461 11 C -0.030 4.030 12 O -0.315 6.315 13 C 0.022 3.978 14 C -0.070 4.070 15 C -0.184 4.184 16 C -0.074 4.074 17 N -0.219 5.219 18 C -0.073 4.073 19 C -0.173 4.173 20 N -0.394 5.394 21 C -0.342 4.342 22 H 0.075 0.925 23 C -0.258 4.258 24 N -0.638 5.638 25 Si 0.774 3.226 26 H -0.200 1.200 27 H -0.233 1.233 28 H -0.184 1.184 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.254 0.746 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.162 0.838 43 H 0.190 0.810 44 H 0.199 0.801 45 H 0.178 0.822 46 H 0.193 0.807 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.858 9.148 21.754 24.576 hybrid contribution -0.766 -0.749 -0.644 1.250 sum 6.093 8.399 21.111 23.523 Atomic orbital electron populations 1.22286 0.97169 1.01336 1.00886 1.20543 0.92880 0.95541 0.85212 0.93536 1.22140 0.92411 1.02684 0.98574 1.20898 0.95814 0.81233 0.98360 0.93870 1.22091 1.00289 1.00290 0.98312 1.45708 1.15906 1.11625 1.62282 1.20973 0.82125 0.90766 0.77245 1.90723 1.52911 1.58186 1.44313 1.22366 0.85568 0.92458 1.02597 1.88060 1.30598 1.28986 1.83831 1.21566 0.90786 0.83443 1.02009 1.20317 0.95833 0.96604 0.94229 1.22366 0.99497 1.00445 0.96044 1.23115 0.88067 0.95562 1.00657 1.67689 1.36053 1.11991 1.06209 1.23267 0.97885 0.94811 0.91332 1.22379 0.92765 0.99538 1.02602 1.42870 1.79761 1.09436 1.07301 1.18980 1.33760 0.94254 0.87242 0.92487 1.25385 1.02998 1.01885 0.95561 1.69862 1.55485 1.37380 1.01099 0.85545 0.77527 0.82003 0.77557 1.19993 1.23277 1.18364 0.93191 0.90053 0.95582 0.89826 0.86674 0.94659 0.89496 0.91043 0.74588 0.85716 0.88167 0.88561 0.90292 0.83812 0.80965 0.80074 0.82184 0.80690 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.61 9.49 71.98 0.68 -3.92 16 2 C 0.17 5.46 2.84 44.99 0.13 5.58 16 3 H 0.05 1.60 7.56 -2.39 -0.02 1.58 16 4 C -0.12 -2.81 4.29 30.59 0.13 -2.68 16 5 C 0.14 3.99 2.52 44.99 0.11 4.11 16 6 H 0.04 1.74 7.05 -2.39 -0.02 1.73 16 7 C -0.15 -3.43 9.48 71.98 0.68 -2.75 16 8 N -0.70 -17.26 4.45 -442.52 -1.97 -19.23 16 9 C 0.50 15.79 7.87 87.66 0.69 16.48 16 10 O -0.58 -26.10 16.16 15.99 0.26 -25.84 16 11 C 0.05 1.04 6.42 71.24 0.46 1.50 16 12 O -0.40 -10.92 9.86 -129.94 -1.28 -12.20 16 13 C 0.10 1.77 6.11 71.24 0.44 2.20 16 14 C -0.06 -1.33 5.55 -19.67 -0.11 -1.44 16 15 C -0.16 -3.73 9.82 22.36 0.22 -3.51 16 16 C 0.08 1.88 11.18 84.68 0.95 2.83 16 17 N -0.51 -12.52 10.36 -195.84 -2.03 -14.55 16 18 C 0.08 1.67 11.18 84.68 0.95 2.62 16 19 C -0.15 -2.89 9.82 22.36 0.22 -2.67 16 20 N -0.75 -34.13 4.30 -322.95 -1.39 -35.51 16 21 C -0.21 -12.09 10.41 84.03 0.87 -11.22 16 22 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 24 N -0.99 -65.63 13.97 21.65 0.30 -65.33 16 25 Si 0.94 48.46 27.74 68.60 1.90 50.36 16 26 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 27 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 28 H -0.26 -12.31 6.52 99.48 0.65 -11.66 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.12 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.42 6.47 8.60 -92.71 -0.80 5.67 16 38 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.10 1.07 8.10 -2.39 -0.02 1.05 16 41 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 42 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 43 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 44 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 46 H 0.36 16.29 5.66 -92.71 -0.52 15.76 16 47 H 0.25 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -90.06 395.15 2.27 -87.79 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.42 Total: 31.03 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 6.89 Total: 3.48 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -5.08 Total: -134.62 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.02 Total: -38.04 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.90 Total: 50.36 kcal Total: -90.06 2.27 -87.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135778674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.896 kcal (2) G-P(sol) polarization free energy of solvation -90.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds