Wall clock time and date at job start Fri Apr 10 2020 18:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00106 * 2 1 4 4 H 1.48499 * 109.47468 * 270.00198 * 3 2 1 5 5 H 1.48501 * 109.46896 * 30.00331 * 3 2 1 6 6 H 1.48503 * 109.46858 * 150.00058 * 3 2 1 7 7 C 1.37883 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00292 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99520 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47364 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00318 * 169.99704 * 10 9 7 12 12 C 1.53245 * 109.33753 * 187.25055 * 11 10 9 13 13 N 1.47076 * 108.52194 * 306.17053 * 12 11 10 14 14 C 1.34781 * 120.88035 * 231.18572 * 13 12 11 15 15 O 1.21589 * 119.99628 * 184.99804 * 14 13 12 16 16 N 1.34776 * 120.00087 * 4.99588 * 14 13 12 17 17 C 1.46495 * 120.00155 * 174.91664 * 16 14 13 18 18 C 1.52991 * 109.47394 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.47398 * 180.02562 * 18 17 16 20 20 N 1.46500 * 109.47218 * 180.02562 * 19 18 17 21 21 C 1.34952 * 126.03757 * 125.00075 * 20 19 18 22 22 C 1.35313 * 107.74277 * 179.97438 * 21 20 19 23 23 C 1.39870 * 107.92495 * 359.97438 * 22 21 20 24 24 N 1.30839 * 108.20118 * 359.74316 * 23 22 21 25 25 C 1.47083 * 118.23762 * 51.46027 * 13 12 11 26 26 C 1.46902 * 110.99866 * 294.30055 * 10 9 7 27 27 H 0.97005 * 120.00405 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.48036 * 59.99919 * 9 7 2 29 29 H 1.09008 * 109.47240 * 300.00054 * 9 7 2 30 30 H 1.09002 * 109.49249 * 67.29250 * 11 10 9 31 31 H 1.08996 * 109.49240 * 307.21011 * 11 10 9 32 32 H 1.08997 * 109.62577 * 186.46020 * 12 11 10 33 33 H 1.08999 * 109.62517 * 65.88672 * 12 11 10 34 34 H 0.97002 * 119.99918 * 354.92028 * 16 14 13 35 35 H 1.09000 * 109.47150 * 300.00346 * 17 16 14 36 36 H 1.09001 * 109.47077 * 59.99908 * 17 16 14 37 37 H 1.09000 * 109.47108 * 300.00193 * 18 17 16 38 38 H 1.09001 * 109.47230 * 59.99822 * 18 17 16 39 39 H 1.09000 * 109.47085 * 300.00130 * 19 18 17 40 40 H 1.09001 * 109.46867 * 60.00423 * 19 18 17 41 41 H 1.07995 * 126.12608 * 359.95299 * 21 20 19 42 42 H 1.08002 * 126.03590 * 179.97438 * 22 21 20 43 43 H 1.08007 * 125.89720 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.62702 * 68.25130 * 25 13 12 45 45 H 1.09001 * 109.62840 * 188.83105 * 25 13 12 46 46 H 1.09004 * 109.49255 * 292.70649 * 26 10 9 47 47 H 1.09003 * 109.49166 * 52.77973 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5210 -4.8936 0.2356 12 6 2.5635 -6.0034 0.4087 13 7 3.4621 -5.9859 -0.7555 14 6 3.7129 -7.1117 -1.4528 15 8 4.5274 -7.0990 -2.3554 16 7 3.0609 -8.2516 -1.1494 17 6 3.2498 -9.4459 -1.9765 18 6 2.4020 -10.5913 -1.4197 19 6 2.5998 -11.8388 -2.2831 20 7 1.7875 -12.9353 -1.7503 21 6 0.8741 -13.6531 -2.4371 22 6 0.3463 -14.5670 -1.5902 23 6 0.9583 -14.4025 -0.3434 24 7 1.8266 -13.4285 -0.4397 25 6 4.0846 -4.7084 -1.1350 26 6 2.9776 -3.6486 -1.2508 27 1 -0.4851 0.8400 0.0004 28 1 0.6247 -2.5564 -0.8919 29 1 0.6240 -2.5574 0.8881 30 1 0.8799 -5.1261 -0.6148 31 1 0.9152 -4.8196 1.1387 32 1 2.0628 -6.9696 0.4703 33 1 3.1384 -5.8271 1.3178 34 1 2.4665 -8.2812 -0.3834 35 1 2.9427 -9.2313 -3.0000 36 1 4.3013 -9.7330 -1.9653 37 1 2.7087 -10.8060 -0.3960 38 1 1.3506 -10.3039 -1.4312 39 1 2.2934 -11.6243 -3.3069 40 1 3.6512 -12.1260 -2.2710 41 1 0.6113 -13.5215 -3.4763 42 1 -0.4135 -15.2949 -1.8341 43 1 0.7526 -14.9821 0.5445 44 1 4.8030 -4.4101 -0.3715 45 1 4.5901 -4.8182 -2.0945 46 1 2.3163 -3.8984 -2.0806 47 1 3.4281 -2.6716 -1.4258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601568343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:05 Heat of formation + Delta-G solvation = 66.377010 kcal Electronic energy + Delta-G solvation = -26280.643022 eV Core-core repulsion = 22500.731076 eV Total energy + Delta-G solvation = -3779.911946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46103 -40.26176 -37.79806 -36.27675 -34.46011 -33.94995 -32.40804 -31.18777 -30.58658 -30.02996 -28.19923 -26.14288 -25.26462 -23.32131 -22.56993 -22.12562 -21.41565 -21.00609 -20.65143 -19.25568 -17.99921 -17.63039 -16.45487 -16.34549 -16.14342 -15.48993 -15.04448 -14.89798 -14.66197 -14.53827 -14.31073 -14.03595 -13.87377 -13.80885 -13.51613 -13.29609 -13.10187 -12.70149 -12.52847 -12.29279 -12.09212 -11.96236 -11.51576 -11.30906 -11.16237 -10.96493 -10.84473 -10.76627 -10.64043 -10.52835 -10.05277 -9.87618 -9.79101 -9.29827 -9.22312 -8.96955 -8.50218 -8.35486 -7.34734 -6.07601 -4.09400 1.53378 2.08647 2.51040 2.68601 3.26074 3.29554 3.36009 3.40144 3.81238 4.06291 4.36364 4.38455 4.46260 4.56533 4.66193 4.75648 4.80498 4.96670 5.17815 5.18447 5.26876 5.27945 5.34531 5.40077 5.41534 5.60023 5.61401 5.65425 5.69351 5.81202 5.91175 6.01882 6.17099 6.28750 6.34832 6.39941 6.53673 6.62330 6.65936 7.00990 7.19985 7.26119 7.34400 7.72740 7.95291 7.99523 8.10481 8.45901 8.62845 8.97903 9.55260 11.03198 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.026836 B = 0.001921 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.138639 B =14573.897606 C =15196.289223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.118 3.882 13 N -0.625 5.625 14 C 0.708 3.292 15 O -0.596 6.596 16 N -0.751 5.751 17 C 0.143 3.857 18 C -0.144 4.144 19 C 0.138 3.862 20 N -0.372 5.372 21 C 0.053 3.947 22 C -0.277 4.277 23 C 0.043 3.957 24 N -0.295 5.295 25 C 0.133 3.867 26 C 0.051 3.949 27 H 0.262 0.738 28 H -0.009 1.009 29 H 0.031 0.969 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.396 0.604 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.173 0.827 42 H 0.146 0.854 43 H 0.182 0.818 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.024 0.976 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 -27.074 -3.415 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.005 4.005 13 N -0.362 5.362 14 C 0.410 3.590 15 O -0.475 6.475 16 N -0.410 5.410 17 C 0.018 3.982 18 C -0.182 4.182 19 C 0.016 3.984 20 N -0.155 5.155 21 C -0.093 4.093 22 C -0.306 4.306 23 C -0.143 4.143 24 N -0.116 5.116 25 C 0.010 3.990 26 C -0.079 4.079 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.233 0.767 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.191 0.809 42 H 0.164 0.836 43 H 0.199 0.801 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.042 0.958 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.339 -26.034 -3.161 26.437 hybrid contribution -1.365 0.273 -0.685 1.552 sum 1.974 -25.760 -3.846 26.121 Atomic orbital electron populations 1.69952 1.06099 1.26867 1.50834 1.24995 0.94873 0.99389 0.95339 0.86487 0.79813 0.82994 0.78068 1.20716 1.21263 1.19716 1.21141 0.93524 0.89840 1.50302 0.91741 1.19729 0.89999 0.87228 0.96157 1.62076 1.27840 1.02428 1.33650 1.22382 0.94728 0.90966 1.00837 1.21774 0.91880 0.98173 0.88713 1.47417 1.49440 1.07939 1.31360 1.15794 0.81054 0.80188 0.82009 1.90888 1.37778 1.84690 1.34183 1.45185 1.51025 1.10629 1.34140 1.20974 0.99873 0.83005 0.94376 1.22045 1.01558 0.93340 1.01297 1.21599 0.95657 0.83744 0.97385 1.48744 1.31247 1.27420 1.08041 1.22620 0.93022 0.94465 0.99167 1.21540 1.08924 1.06351 0.93827 1.23926 0.95006 0.96418 0.98970 1.77368 1.23060 1.14421 0.96759 1.21846 0.95367 0.80459 1.01308 1.22457 0.95181 0.99219 0.90995 0.92879 0.99138 0.95057 0.95573 0.90096 0.91321 0.90548 0.76707 0.91524 0.91231 0.89591 0.90581 0.88119 0.89191 0.80936 0.83575 0.80074 0.91094 0.89351 0.95752 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.92 8.41 -34.44 -0.29 -14.21 16 8 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 9 C 0.19 4.89 4.72 -4.98 -0.02 4.87 16 10 N -0.53 -11.00 4.62 -235.46 -1.09 -12.09 16 11 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 12 C 0.12 1.57 6.59 -3.60 -0.02 1.55 16 13 N -0.62 -9.53 3.00 -177.91 -0.53 -10.07 16 14 C 0.71 10.84 8.31 -86.91 -0.72 10.12 16 15 O -0.60 -11.11 15.83 5.29 0.08 -11.03 16 16 N -0.75 -8.36 5.47 -65.23 -0.36 -8.72 16 17 C 0.14 1.25 5.68 -4.05 -0.02 1.23 16 18 C -0.14 -0.97 5.52 -26.74 -0.15 -1.12 16 19 C 0.14 0.79 6.51 -4.04 -0.03 0.77 16 20 N -0.37 -2.98 3.68 -61.37 -0.23 -3.21 16 21 C 0.05 0.35 11.45 -17.22 -0.20 0.15 16 22 C -0.28 -1.92 10.80 -40.01 -0.43 -2.35 16 23 C 0.04 0.34 12.03 -17.36 -0.21 0.14 16 24 N -0.29 -2.95 12.42 30.63 0.38 -2.57 16 25 C 0.13 2.20 6.61 -3.37 -0.02 2.18 16 26 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 29 H 0.03 0.84 7.97 -51.92 -0.41 0.42 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 32 H 0.07 0.69 5.63 -51.93 -0.29 0.40 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 3.66 5.97 -40.82 -0.24 3.41 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.35 8.07 -51.93 -0.42 -0.07 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.09 1.47 7.09 -51.93 -0.37 1.10 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.10 1.98 6.67 -51.93 -0.35 1.64 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -34.75 382.75 -10.01 -44.77 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.50 Total: 0.01 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -2.25 Total: 6.37 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -1.09 Total: -62.17 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.75 -10.01 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601568343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.144 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds