Wall clock time and date at job start Fri Apr 10 2020 18:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47334 * 2 1 4 4 N 1.46507 * 109.46700 * 240.00349 * 2 1 3 5 5 C 1.34780 * 119.99821 * 85.00139 * 4 2 1 6 6 O 1.21586 * 119.99740 * 4.97859 * 5 4 2 7 7 N 1.34773 * 119.99882 * 184.98157 * 5 4 2 8 8 C 1.47077 * 120.87913 * 174.49382 * 7 5 4 9 9 C 1.53242 * 108.52414 * 129.08573 * 8 7 5 10 10 N 1.46903 * 109.33477 * 53.82899 * 9 8 7 11 11 C 1.46903 * 110.99761 * 172.75244 * 10 9 8 12 12 C 1.50699 * 109.46861 * 294.29992 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00232 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99585 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00316 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46758 * 59.99891 * 16 14 12 18 18 H 1.48495 * 109.47243 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47095 * 300.00492 * 16 14 12 20 20 C 1.46902 * 111.26992 * 296.89760 * 10 9 8 21 21 C 1.47074 * 120.88474 * 354.77206 * 7 5 4 22 22 C 1.50697 * 109.47274 * 120.00884 * 2 1 3 23 23 C 1.39875 * 126.04208 * 80.02335 * 22 2 1 24 24 N 1.30834 * 108.20206 * 179.97438 * 23 22 2 25 25 N 1.40090 * 108.20618 * 0.02562 * 24 23 22 26 26 C 1.46502 * 126.03552 * 180.02562 * 25 24 23 27 27 C 1.34947 * 107.92195 * 359.75362 * 25 24 23 28 28 H 1.09001 * 109.46527 * 299.99261 * 1 2 3 29 29 H 1.08999 * 109.47645 * 59.99382 * 1 2 3 30 30 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 31 31 H 0.96993 * 120.00525 * 265.00060 * 4 2 1 32 32 H 1.09004 * 109.63333 * 248.79767 * 8 7 5 33 33 H 1.08998 * 109.63029 * 9.37698 * 8 7 5 34 34 H 1.09001 * 109.49074 * 293.87791 * 9 8 7 35 35 H 1.08993 * 109.51799 * 173.79923 * 9 8 7 36 36 H 1.08994 * 109.47412 * 54.30090 * 11 10 9 37 37 H 1.08997 * 109.47152 * 174.30677 * 11 10 9 38 38 H 0.97004 * 119.99730 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.49340 * 303.14669 * 20 10 9 40 40 H 1.09002 * 109.49118 * 183.06673 * 20 10 9 41 41 H 1.09004 * 109.62779 * 350.62796 * 21 7 5 42 42 H 1.09003 * 109.62824 * 111.20142 * 21 7 5 43 43 H 1.07997 * 125.89987 * 359.97438 * 23 22 2 44 44 H 1.08998 * 109.47287 * 89.97143 * 26 25 24 45 45 H 1.09008 * 109.46766 * 209.97101 * 26 25 24 46 46 H 1.09001 * 109.47189 * 329.96643 * 26 25 24 47 47 H 1.08007 * 126.12221 * 180.23788 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.9450 1.1804 -2.3911 7 7 2.4995 -0.6742 -3.4805 8 6 2.5289 0.0150 -4.7795 9 6 3.8850 -0.2515 -5.4414 10 7 4.1206 -1.7003 -5.5013 11 6 5.3277 -2.0055 -6.2811 12 6 5.1100 -1.6104 -7.7190 13 1 4.1693 -1.1757 -8.0231 14 6 6.1118 -1.8039 -8.6464 15 7 7.2571 -2.3338 -8.2761 16 14 5.8418 -1.3148 -10.4289 17 1 5.5585 0.1409 -10.5052 18 1 7.0614 -1.6244 -11.2173 19 1 4.6903 -2.0727 -10.9811 20 6 4.2021 -2.2831 -4.1553 21 6 2.8590 -2.0997 -3.4408 22 6 2.0324 -0.7106 1.2303 23 6 2.1220 -2.0959 1.4017 24 7 2.6032 -2.3297 2.5956 25 7 2.8347 -1.0987 3.2230 26 6 3.3719 -0.9067 4.5724 27 6 2.4813 -0.1211 2.3626 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.2489 -1.6317 -1.1529 32 1 1.7299 -0.3671 -5.4150 33 1 2.3995 1.0867 -4.6284 34 1 4.6742 0.2214 -4.8569 35 1 3.8843 0.1589 -6.4511 36 1 6.1726 -1.4493 -5.8753 37 1 5.5356 -3.0740 -6.2254 38 1 7.9618 -2.4703 -8.9286 39 1 4.9869 -1.7818 -3.5888 40 1 4.4310 -3.3460 -4.2325 41 1 2.9479 -2.4262 -2.4047 42 1 2.0918 -2.6851 -3.9476 43 1 1.8423 -2.8434 0.6741 44 1 4.4591 -0.8444 4.5252 45 1 2.9731 0.0159 4.9943 46 1 3.0832 -1.7486 5.2017 47 1 2.5433 0.9415 2.5458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601576787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:10 Heat of formation + Delta-G solvation = 70.403802 kcal Electronic energy + Delta-G solvation = -27149.822524 eV Core-core repulsion = 23370.085193 eV Total energy + Delta-G solvation = -3779.737331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62027 -40.13037 -37.73651 -35.78204 -34.36236 -33.32555 -32.42148 -31.50535 -30.46269 -29.34842 -27.96634 -26.99249 -25.45286 -23.66497 -22.92842 -22.14959 -21.56459 -20.75306 -20.10869 -19.19255 -18.06497 -17.09385 -16.36727 -15.99922 -15.81480 -15.41696 -14.86561 -14.71139 -14.47954 -14.39476 -14.35673 -13.89951 -13.64171 -13.57536 -13.41102 -13.17186 -13.00229 -12.90796 -12.48659 -12.24152 -12.04102 -11.91462 -11.66266 -11.25537 -11.11221 -10.81322 -10.74532 -10.72335 -10.56157 -10.46853 -9.93806 -9.81343 -9.76929 -9.26273 -9.15011 -8.73304 -8.45813 -8.27525 -7.29178 -6.04085 -4.05799 1.52722 2.15408 2.38748 2.87358 3.33831 3.37805 3.38064 3.40730 3.99612 4.12346 4.41072 4.48919 4.67099 4.72575 4.81448 4.89711 4.97888 5.11237 5.23693 5.26281 5.31066 5.37662 5.41206 5.46676 5.50803 5.68381 5.70994 5.84730 5.89892 6.01938 6.07565 6.09825 6.23977 6.28552 6.46727 6.56148 6.60269 6.63819 6.76125 7.13530 7.25148 7.31421 7.33868 7.76532 8.03581 8.08379 8.15934 8.50390 8.75808 9.01278 9.58602 11.06737 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.002402 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.757477 B =11654.713801 C =12347.328282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.091 0.909 4 N -0.742 5.742 5 C 0.709 3.291 6 O -0.597 6.597 7 N -0.625 5.625 8 C 0.133 3.867 9 C 0.050 3.950 10 N -0.535 5.535 11 C 0.194 3.806 12 C -0.509 4.509 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.899 3.101 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.041 3.959 21 C 0.119 3.881 22 C -0.244 4.244 23 C 0.057 3.943 24 N -0.294 5.294 25 N -0.376 5.376 26 C 0.101 3.899 27 C 0.069 3.931 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.393 0.607 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.024 0.976 35 H 0.096 0.904 36 H -0.009 1.009 37 H 0.031 0.969 38 H 0.262 0.738 39 H 0.026 0.974 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.181 0.819 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.243 2.536 24.233 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.134 3.866 3 H 0.109 0.891 4 N -0.400 5.400 5 C 0.411 3.589 6 O -0.476 6.476 7 N -0.362 5.362 8 C 0.010 3.990 9 C -0.079 4.079 10 N -0.260 5.260 11 C 0.069 3.931 12 C -0.548 4.548 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.089 4.089 21 C -0.005 4.005 22 C -0.256 4.256 23 C -0.130 4.130 24 N -0.115 5.115 25 N -0.158 5.158 26 C -0.040 4.040 27 C -0.078 4.078 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.230 0.770 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.042 0.958 35 H 0.115 0.885 36 H 0.008 0.992 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.198 0.802 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -11.197 2.272 24.900 27.396 hybrid contribution 0.735 0.585 -1.060 1.417 sum -10.463 2.856 23.839 26.190 Atomic orbital electron populations 1.22165 0.94942 1.02086 1.02184 1.18797 0.92988 0.95648 0.79168 0.89061 1.45344 1.72164 1.13720 1.08761 1.15800 0.77909 0.84944 0.80233 1.90872 1.59118 1.12651 1.85002 1.47392 1.70925 1.10934 1.06967 1.21726 0.98281 0.97628 0.81333 1.22367 0.94404 0.89896 1.01224 1.62085 1.42071 1.10663 1.11165 1.19714 0.84414 0.96560 0.92385 1.21109 1.00099 1.40932 0.92627 0.91804 1.24995 0.95076 0.95373 0.99163 1.69948 1.04775 1.44357 1.34730 0.86544 0.77423 0.79005 0.84346 1.20222 1.21412 1.20132 1.22376 0.94664 1.00529 0.91342 1.21747 0.97867 0.81445 0.99411 1.20143 1.13923 0.93617 0.97927 1.23675 0.98755 0.95787 0.94740 1.77389 1.21957 1.03335 1.08824 1.48490 1.49851 1.03902 1.13564 1.21879 0.99586 1.03707 0.78829 1.22289 0.99275 0.95572 0.90650 0.91971 0.91847 0.92556 0.77027 0.91226 0.89313 0.95775 0.88536 0.99166 0.95101 0.92850 0.95596 0.90154 0.91326 0.90660 0.80194 0.90616 0.89380 0.89234 0.80659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.47 37.16 0.35 -1.09 16 2 C 0.24 2.47 3.05 -69.08 -0.21 2.26 16 3 H 0.09 1.07 7.50 -51.93 -0.39 0.68 16 4 N -0.74 -8.67 4.97 -59.81 -0.30 -8.97 16 5 C 0.71 10.98 8.27 -86.92 -0.72 10.26 16 6 O -0.60 -11.14 15.43 5.29 0.08 -11.06 16 7 N -0.63 -9.64 3.01 -178.20 -0.54 -10.17 16 8 C 0.13 2.22 6.61 -3.60 -0.02 2.20 16 9 C 0.05 0.98 5.46 -3.70 -0.02 0.96 16 10 N -0.53 -11.17 4.62 -235.77 -1.09 -12.26 16 11 C 0.19 4.96 4.72 -4.97 -0.02 4.94 16 12 C -0.51 -14.03 8.41 -34.44 -0.29 -14.32 16 13 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 16 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 21 C 0.12 1.61 6.53 -3.61 -0.02 1.58 16 22 C -0.24 -2.25 5.09 -105.05 -0.53 -2.79 16 23 C 0.06 0.54 11.20 -17.36 -0.19 0.35 16 24 N -0.29 -3.16 12.58 30.62 0.39 -2.77 16 25 N -0.38 -3.18 4.01 -68.16 -0.27 -3.45 16 26 C 0.10 0.43 11.47 59.85 0.69 1.12 16 27 C 0.07 0.55 11.40 -17.23 -0.20 0.36 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.39 3.88 5.17 -40.82 -0.21 3.66 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.50 7.04 -51.93 -0.37 1.13 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 36 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 37 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 38 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 41 H 0.07 0.71 5.75 -51.93 -0.30 0.42 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.18 1.30 7.72 -52.49 -0.41 0.89 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.09 0.16 8.14 -51.92 -0.42 -0.27 16 46 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.18 0.87 8.06 -52.48 -0.42 0.44 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -34.78 380.36 -9.02 -43.81 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.43 Total: 0.53 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -1.32 Total: 7.95 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -1.07 Total: -63.40 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.78 -9.02 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601576787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.209 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds