Wall clock time and date at job start Fri Apr 10 2020 18:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47334 * 2 1 4 4 N 1.46507 * 109.46700 * 240.00349 * 2 1 3 5 5 C 1.34780 * 119.99821 * 85.00139 * 4 2 1 6 6 O 1.21586 * 119.99740 * 4.97859 * 5 4 2 7 7 N 1.34773 * 119.99882 * 184.98157 * 5 4 2 8 8 C 1.47077 * 120.87913 * 174.49382 * 7 5 4 9 9 C 1.53242 * 108.52414 * 129.08573 * 8 7 5 10 10 N 1.46903 * 109.33477 * 53.82899 * 9 8 7 11 11 C 1.46903 * 110.99761 * 172.75244 * 10 9 8 12 12 C 1.50699 * 109.46861 * 294.29992 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00232 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99585 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00316 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46758 * 59.99891 * 16 14 12 18 18 H 1.48495 * 109.47243 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47095 * 300.00492 * 16 14 12 20 20 C 1.46902 * 111.26992 * 296.89760 * 10 9 8 21 21 C 1.47074 * 120.88474 * 354.77206 * 7 5 4 22 22 C 1.50697 * 109.47274 * 120.00884 * 2 1 3 23 23 C 1.39875 * 126.04208 * 80.02335 * 22 2 1 24 24 N 1.30834 * 108.20206 * 179.97438 * 23 22 2 25 25 N 1.40090 * 108.20618 * 0.02562 * 24 23 22 26 26 C 1.46502 * 126.03552 * 180.02562 * 25 24 23 27 27 C 1.34947 * 107.92195 * 359.75362 * 25 24 23 28 28 H 1.09001 * 109.46527 * 299.99261 * 1 2 3 29 29 H 1.08999 * 109.47645 * 59.99382 * 1 2 3 30 30 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 31 31 H 0.96993 * 120.00525 * 265.00060 * 4 2 1 32 32 H 1.09004 * 109.63333 * 248.79767 * 8 7 5 33 33 H 1.08998 * 109.63029 * 9.37698 * 8 7 5 34 34 H 1.09001 * 109.49074 * 293.87791 * 9 8 7 35 35 H 1.08993 * 109.51799 * 173.79923 * 9 8 7 36 36 H 1.08994 * 109.47412 * 54.30090 * 11 10 9 37 37 H 1.08997 * 109.47152 * 174.30677 * 11 10 9 38 38 H 0.97004 * 119.99730 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.49340 * 303.14669 * 20 10 9 40 40 H 1.09002 * 109.49118 * 183.06673 * 20 10 9 41 41 H 1.09004 * 109.62779 * 350.62796 * 21 7 5 42 42 H 1.09003 * 109.62824 * 111.20142 * 21 7 5 43 43 H 1.07997 * 125.89987 * 359.97438 * 23 22 2 44 44 H 1.08998 * 109.47287 * 89.97143 * 26 25 24 45 45 H 1.09008 * 109.46766 * 209.97101 * 26 25 24 46 46 H 1.09001 * 109.47189 * 329.96643 * 26 25 24 47 47 H 1.08007 * 126.12221 * 180.23788 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0181 -2.3572 6 8 1.9450 1.1804 -2.3911 7 7 2.4995 -0.6742 -3.4805 8 6 2.5289 0.0150 -4.7795 9 6 3.8850 -0.2515 -5.4414 10 7 4.1206 -1.7003 -5.5013 11 6 5.3277 -2.0055 -6.2811 12 6 5.1100 -1.6104 -7.7190 13 1 4.1693 -1.1757 -8.0231 14 6 6.1118 -1.8039 -8.6464 15 7 7.2571 -2.3338 -8.2761 16 14 5.8418 -1.3148 -10.4289 17 1 5.5585 0.1409 -10.5052 18 1 7.0614 -1.6244 -11.2173 19 1 4.6903 -2.0727 -10.9811 20 6 4.2021 -2.2831 -4.1553 21 6 2.8590 -2.0997 -3.4408 22 6 2.0324 -0.7106 1.2303 23 6 2.1220 -2.0959 1.4017 24 7 2.6032 -2.3297 2.5956 25 7 2.8347 -1.0987 3.2230 26 6 3.3719 -0.9067 4.5724 27 6 2.4813 -0.1211 2.3626 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.2489 -1.6317 -1.1529 32 1 1.7299 -0.3671 -5.4150 33 1 2.3995 1.0867 -4.6284 34 1 4.6742 0.2214 -4.8569 35 1 3.8843 0.1589 -6.4511 36 1 6.1726 -1.4493 -5.8753 37 1 5.5356 -3.0740 -6.2254 38 1 7.9618 -2.4703 -8.9286 39 1 4.9869 -1.7818 -3.5888 40 1 4.4310 -3.3460 -4.2325 41 1 2.9479 -2.4262 -2.4047 42 1 2.0918 -2.6851 -3.9476 43 1 1.8423 -2.8434 0.6741 44 1 4.4591 -0.8444 4.5252 45 1 2.9731 0.0159 4.9943 46 1 3.0832 -1.7486 5.2017 47 1 2.5433 0.9415 2.5458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601576787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:09 Heat of formation + Delta-G solvation = 45.635854 kcal Electronic energy + Delta-G solvation = -27150.896543 eV Core-core repulsion = 23370.085193 eV Total energy + Delta-G solvation = -3780.811350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28138 -41.33216 -39.16785 -36.77887 -35.94712 -34.42029 -33.90222 -32.58610 -31.68073 -30.20535 -29.57841 -27.53424 -27.14382 -24.85578 -24.14284 -23.70340 -22.47627 -21.88393 -20.97606 -20.36801 -19.19698 -18.48691 -17.86285 -17.14479 -16.70362 -16.55687 -16.34222 -15.98728 -15.67209 -15.48444 -15.41193 -15.25364 -15.07876 -14.67753 -14.53045 -14.07814 -13.84833 -13.73065 -13.53076 -13.38512 -13.32254 -13.03647 -12.79365 -12.72292 -12.55035 -12.43215 -12.33680 -12.25476 -12.13876 -11.71566 -11.45324 -11.35400 -11.12128 -10.60168 -10.40159 -10.22427 -9.57968 -9.38250 -9.03057 -8.19641 -6.29524 0.91271 1.43415 1.46313 1.53525 1.54340 1.69600 1.88109 2.16985 2.41746 2.95249 3.12665 3.24399 3.57301 3.97388 3.98145 4.08736 4.13172 4.21179 4.28351 4.29931 4.38466 4.44636 4.45322 4.48292 4.60949 4.71520 4.73731 4.79319 4.81528 4.87635 4.97150 4.99789 5.04079 5.09816 5.19209 5.24656 5.35574 5.48863 5.61731 5.64882 5.67465 5.98088 6.04549 6.10161 6.27504 6.59120 6.70276 6.85902 6.99279 7.40167 7.57982 8.91347 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.002402 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.757477 B =11654.713801 C =12347.328282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.245 3.755 3 H 0.076 0.924 4 N -0.727 5.727 5 C 0.707 3.293 6 O -0.632 6.632 7 N -0.630 5.630 8 C 0.146 3.854 9 C 0.056 3.944 10 N -0.536 5.536 11 C 0.209 3.791 12 C -0.523 4.523 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.969 3.031 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.037 3.963 21 C 0.128 3.872 22 C -0.259 4.259 23 C 0.052 3.948 24 N -0.331 5.331 25 N -0.379 5.379 26 C 0.092 3.908 27 C 0.075 3.925 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.404 0.596 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.006 0.994 35 H 0.080 0.920 36 H -0.044 1.044 37 H 0.010 0.990 38 H 0.264 0.736 39 H 0.014 0.986 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.197 0.803 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.091 0.909 47 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.745 2.563 25.312 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.139 3.861 3 H 0.094 0.906 4 N -0.385 5.385 5 C 0.409 3.591 6 O -0.513 6.513 7 N -0.366 5.366 8 C 0.022 3.978 9 C -0.073 4.073 10 N -0.261 5.261 11 C 0.083 3.917 12 C -0.561 4.561 13 H 0.085 0.915 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.794 3.206 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.092 4.092 21 C 0.005 3.995 22 C -0.271 4.271 23 C -0.134 4.134 24 N -0.153 5.153 25 N -0.160 5.160 26 C -0.048 4.048 27 C -0.073 4.073 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.242 0.758 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.024 0.976 35 H 0.099 0.901 36 H -0.026 1.026 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.107 0.893 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.213 0.787 44 H 0.100 0.900 45 H 0.135 0.865 46 H 0.109 0.891 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -12.718 2.263 26.038 29.066 hybrid contribution 1.242 0.588 -1.259 1.864 sum -11.476 2.851 24.779 27.456 Atomic orbital electron populations 1.22089 0.94079 1.02520 1.01914 1.18791 0.93542 0.94843 0.78933 0.90573 1.45280 1.71086 1.14103 1.07994 1.15921 0.77720 0.84580 0.80867 1.90850 1.60619 1.14288 1.85575 1.47400 1.71069 1.11593 1.06561 1.21487 0.96367 0.97838 0.82091 1.22297 0.95746 0.88838 1.00419 1.62017 1.39239 1.11587 1.13253 1.19368 0.85205 0.94548 0.92606 1.21443 1.00258 1.40766 0.93674 0.91517 1.25921 0.94700 0.95210 1.03892 1.70081 1.05705 1.45489 1.36305 0.85433 0.77552 0.79009 0.78617 1.19323 1.21098 1.19094 1.22526 0.96766 1.00548 0.89356 1.21813 0.95792 0.80576 1.01306 1.20055 1.15480 0.93639 0.97973 1.23977 0.98295 0.96296 0.94797 1.77335 1.23312 1.05008 1.09633 1.48821 1.49260 1.03321 1.14620 1.22203 1.00100 1.05253 0.77215 1.22778 0.97661 0.96810 0.90099 0.90446 0.93860 0.91724 0.75793 0.90087 0.89532 0.97568 0.90141 1.02629 0.97154 0.92733 0.96772 0.89294 0.87627 0.89168 0.78665 0.89976 0.86509 0.89072 0.77844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.47 71.98 0.68 -1.81 16 2 C 0.24 4.63 3.05 44.24 0.13 4.77 16 3 H 0.08 1.70 7.50 -2.39 -0.02 1.68 16 4 N -0.73 -15.63 4.97 -461.40 -2.29 -17.92 16 5 C 0.71 20.99 8.27 179.05 1.48 22.47 16 6 O -0.63 -23.26 15.43 -3.99 -0.06 -23.32 16 7 N -0.63 -18.53 3.01 -835.96 -2.52 -21.05 16 8 C 0.15 4.78 6.61 86.35 0.57 5.35 16 9 C 0.06 2.24 5.46 86.38 0.47 2.71 16 10 N -0.54 -22.64 4.62 -899.83 -4.16 -26.80 16 11 C 0.21 11.06 4.72 85.56 0.40 11.46 16 12 C -0.52 -29.32 8.41 25.60 0.22 -29.11 16 13 H 0.07 3.63 7.13 -2.91 -0.02 3.60 16 14 C 0.00 0.04 5.46 84.66 0.46 0.50 16 15 N -0.94 -56.30 13.29 21.45 0.28 -56.02 16 16 Si 0.97 44.11 29.54 68.60 2.03 46.13 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 20 C 0.04 1.25 5.62 86.38 0.49 1.73 16 21 C 0.13 3.17 6.53 86.35 0.56 3.73 16 22 C -0.26 -4.28 5.09 -20.14 -0.10 -4.38 16 23 C 0.05 0.89 11.20 85.24 0.95 1.85 16 24 N -0.33 -6.63 12.58 -57.02 -0.72 -7.35 16 25 N -0.38 -5.63 4.01 -369.55 -1.48 -7.12 16 26 C 0.09 0.59 11.47 127.77 1.47 2.06 16 27 C 0.07 1.02 11.40 83.54 0.95 1.97 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.40 6.87 5.17 -92.71 -0.48 6.39 16 32 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.09 2.91 7.04 -2.39 -0.02 2.89 16 34 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.08 3.42 6.67 -2.39 -0.02 3.41 16 36 H -0.04 -2.58 8.12 -2.39 -0.02 -2.60 16 37 H 0.01 0.58 7.97 -2.39 -0.02 0.56 16 38 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 2.82 7.99 -2.39 -0.02 2.80 16 41 H 0.11 1.85 5.75 -2.38 -0.01 1.83 16 42 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.20 2.39 7.72 -2.91 -0.02 2.37 16 44 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 46 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -76.80 380.36 0.31 -76.49 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.49 Total: 13.64 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 8.74 Total: 23.30 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -10.88 Total: -136.24 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.06 Total: -23.32 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -76.80 0.31 -76.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601576787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.127 kcal (2) G-P(sol) polarization free energy of solvation -76.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds