Wall clock time and date at job start Fri Apr 10 2020 18:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47261 * 2 1 4 4 C 1.53003 * 109.47364 * 239.99630 * 2 1 3 5 5 N 1.46499 * 109.46938 * 119.99643 * 2 1 3 6 6 C 1.34587 * 125.74834 * 74.99884 * 5 2 1 7 7 N 1.30866 * 107.62601 * 179.75249 * 6 5 2 8 8 C 1.34554 * 107.27014 * 0.24591 * 7 6 5 9 9 C 1.47863 * 126.04829 * 179.97438 * 8 7 6 10 10 O 1.21555 * 120.00309 * 172.92121 * 9 8 7 11 11 N 1.34780 * 120.00370 * 352.92824 * 9 8 7 12 12 C 1.47079 * 120.88336 * 183.52483 * 11 9 8 13 13 C 1.53693 * 108.27930 * 128.75030 * 12 11 9 14 14 N 1.46904 * 109.25662 * 54.08012 * 13 12 11 15 15 C 1.46904 * 111.00036 * 172.60938 * 14 13 12 16 16 C 1.50702 * 109.46692 * 294.30191 * 15 14 13 17 17 H 1.07997 * 120.00237 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99628 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99991 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99917 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47001 * 59.99789 * 20 18 16 22 22 H 1.48495 * 109.46850 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46731 * 300.00036 * 20 18 16 24 24 C 1.46896 * 111.27019 * 296.75769 * 14 13 12 25 25 C 1.47080 * 120.87671 * 3.79580 * 11 9 8 26 26 N 1.28855 * 125.75005 * 255.18593 * 5 2 1 27 27 H 1.09003 * 109.47141 * 300.00212 * 1 2 3 28 28 H 1.09000 * 109.47106 * 60.00193 * 1 2 3 29 29 H 1.08996 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47012 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46447 * 299.99826 * 3 2 1 32 32 H 1.08996 * 109.46979 * 59.99537 * 3 2 1 33 33 H 1.08998 * 109.46807 * 300.00385 * 4 2 1 34 34 H 1.09000 * 109.46865 * 60.00029 * 4 2 1 35 35 H 1.09002 * 109.47087 * 180.02562 * 4 2 1 36 36 H 1.07998 * 126.18567 * 0.02562 * 6 5 2 37 37 H 1.08998 * 109.62671 * 248.52053 * 12 11 9 38 38 H 1.09002 * 109.62928 * 9.09482 * 12 11 9 39 39 H 1.09001 * 109.65020 * 294.07699 * 13 12 11 40 40 H 1.09002 * 109.42275 * 173.94498 * 13 12 11 41 41 H 1.08993 * 109.47099 * 54.30217 * 15 14 13 42 42 H 1.09002 * 109.46897 * 174.30244 * 15 14 13 43 43 H 0.96996 * 119.99778 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.49430 * 303.14775 * 24 14 13 45 45 H 1.08996 * 109.49523 * 183.06307 * 24 14 13 46 46 H 1.09000 * 109.63104 * 350.89589 * 25 11 9 47 47 H 1.09000 * 109.62615 * 111.48170 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 2.0138 -2.0220 1.3924 7 7 2.5326 -2.2505 2.5719 8 6 2.8522 -1.0575 3.1056 9 6 3.4665 -0.8341 4.4320 10 8 3.8281 0.2808 4.7544 11 7 3.6256 -1.8666 5.2835 12 6 4.1630 -1.6538 6.6360 13 6 3.2098 -2.3163 7.6433 14 7 3.0105 -3.7228 7.2689 15 6 2.2478 -4.4390 8.3000 16 6 3.0600 -4.5093 9.5675 17 1 4.0441 -4.0659 9.6035 18 6 2.5467 -5.1398 10.6811 19 7 1.3484 -5.6802 10.6370 20 14 3.5537 -5.2276 12.2520 21 1 3.8541 -3.8523 12.7249 22 1 2.7826 -5.9515 13.2943 23 1 4.8245 -5.9482 11.9856 24 6 2.3592 -3.8379 5.9572 25 6 3.2719 -3.2369 4.8829 26 7 2.5213 -0.1253 2.2392 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 1.6520 -2.7674 0.6996 37 1 5.1523 -2.1051 6.7120 38 1 4.2285 -0.5851 6.8400 39 1 2.2507 -1.7984 7.6355 40 1 3.6439 -2.2637 8.6417 41 1 1.3150 -3.9101 8.4951 42 1 2.0273 -5.4486 7.9532 43 1 0.9872 -6.1234 11.4205 44 1 1.4120 -3.2988 5.9728 45 1 2.1765 -4.8887 5.7328 46 1 2.7477 -3.2152 3.9274 47 1 4.1771 -3.8374 4.7937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:35 Heat of formation + Delta-G solvation = 81.387503 kcal Electronic energy + Delta-G solvation = -27569.103593 eV Core-core repulsion = 23789.842551 eV Total energy + Delta-G solvation = -3779.261042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.72689 -39.68991 -37.75488 -37.29540 -34.40576 -32.90688 -32.27688 -31.35410 -30.40833 -28.31608 -28.12708 -27.97418 -25.71009 -24.59192 -23.29754 -22.82029 -21.82758 -20.61508 -20.36780 -18.94194 -17.41961 -16.81801 -16.69651 -16.34396 -16.00589 -15.10654 -15.00237 -14.69783 -14.66475 -14.34575 -14.25527 -13.77400 -13.67567 -13.43114 -13.29379 -13.06068 -12.94830 -12.70594 -12.50935 -12.40712 -12.03043 -11.91908 -11.81836 -11.48408 -11.21581 -11.09554 -10.80236 -10.66557 -10.63519 -10.59058 -10.46416 -10.14216 -9.91576 -9.69519 -9.50888 -9.13625 -8.42819 -8.32185 -7.20805 -6.00231 -4.01708 1.32365 1.85546 1.95775 3.03658 3.36328 3.39959 3.43068 3.43885 3.78034 3.94464 4.04516 4.15314 4.41413 4.45802 4.58610 4.80133 4.91647 4.98584 4.99407 5.04104 5.11348 5.20176 5.33073 5.35259 5.48174 5.51550 5.58383 5.67840 5.77641 5.80511 5.86870 5.97357 6.03200 6.11729 6.23763 6.40971 6.58280 6.59300 6.71454 6.92592 7.32249 7.37295 7.56316 7.82059 7.87491 8.10520 8.21499 8.31238 8.57011 9.05570 9.62459 11.10593 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.002502 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.437957 B =11186.690424 C =11643.430400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.166 3.834 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.293 5.293 6 C 0.188 3.812 7 N -0.478 5.478 8 C 0.152 3.848 9 C 0.609 3.391 10 O -0.532 6.532 11 N -0.584 5.584 12 C 0.116 3.884 13 C 0.053 3.947 14 N -0.537 5.537 15 C 0.194 3.806 16 C -0.508 4.508 17 H 0.063 0.937 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.044 3.956 25 C 0.071 3.929 26 N -0.249 5.249 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.222 0.778 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.024 0.976 40 H 0.097 0.903 41 H -0.010 1.010 42 H 0.031 0.969 43 H 0.261 0.739 44 H 0.022 0.978 45 H 0.079 0.921 46 H 0.146 0.854 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 9.651 -27.436 29.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.085 3.915 3 C -0.206 4.206 4 C -0.218 4.218 5 N -0.090 5.090 6 C -0.106 4.106 7 N -0.203 5.203 8 C -0.128 4.128 9 C 0.393 3.607 10 O -0.407 6.407 11 N -0.316 5.316 12 C -0.006 4.006 13 C -0.077 4.077 14 N -0.263 5.263 15 C 0.069 3.931 16 C -0.547 4.547 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.085 4.085 25 C -0.051 4.051 26 N -0.087 5.087 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.238 0.762 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.042 0.958 40 H 0.115 0.885 41 H 0.008 0.992 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.040 0.960 45 H 0.097 0.903 46 H 0.162 0.838 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.983 10.306 -26.896 28.820 hybrid contribution -0.597 -0.156 0.758 0.977 sum -1.580 10.150 -26.138 28.084 Atomic orbital electron populations 1.22273 0.91683 1.03735 1.04178 1.21174 0.95355 0.94359 0.80653 1.21998 1.02603 0.92248 1.03794 1.22263 1.02724 1.01196 0.95627 1.47768 1.41617 1.06195 1.13384 1.26518 1.01261 0.86473 0.96359 1.70930 1.17508 1.25172 1.06727 1.23811 1.05630 0.85417 0.97941 1.16369 0.78819 0.84526 0.81033 1.90788 1.50897 1.23212 1.75789 1.47966 1.61817 1.07841 1.14008 1.22047 0.97654 1.01405 0.79472 1.22411 0.97323 0.89101 0.98828 1.62104 1.50502 1.11220 1.02428 1.19711 0.91544 0.93137 0.88716 1.21130 1.02416 1.35777 0.95348 0.91838 1.24996 0.95078 0.95538 0.99006 1.69952 1.16318 1.37499 1.30100 0.86553 0.80079 0.78185 0.82550 1.20257 1.21423 1.20137 1.22382 0.94795 1.00432 0.90914 1.23117 1.00490 0.80126 1.01371 1.74296 1.13680 1.25341 0.95334 0.91179 0.89577 0.91245 0.91242 0.90326 0.90488 0.91048 0.89315 0.91107 0.76196 0.90527 0.89357 0.95777 0.88451 0.99230 0.95074 0.92893 0.95966 0.90257 0.83753 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 8.72 37.16 0.32 -0.36 16 2 C 0.17 0.94 1.23 -131.82 -0.16 0.78 16 3 C -0.15 -0.90 8.05 37.16 0.30 -0.60 16 4 C -0.16 -0.47 8.28 37.16 0.31 -0.17 16 5 N -0.29 -2.81 3.17 -49.84 -0.16 -2.97 16 6 C 0.19 1.70 11.71 -90.48 -1.06 0.64 16 7 N -0.48 -6.22 7.73 -12.37 -0.10 -6.32 16 8 C 0.15 2.37 7.72 -156.35 -1.21 1.17 16 9 C 0.61 11.07 7.72 -12.32 -0.10 10.98 16 10 O -0.53 -10.95 16.55 5.32 0.09 -10.86 16 11 N -0.58 -10.31 3.00 -173.28 -0.52 -10.83 16 12 C 0.12 2.08 6.62 -3.37 -0.02 2.05 16 13 C 0.05 1.07 5.47 -3.46 -0.02 1.06 16 14 N -0.54 -11.88 4.62 -235.46 -1.09 -12.97 16 15 C 0.19 5.12 4.72 -4.97 -0.02 5.09 16 16 C -0.51 -14.32 8.41 -34.44 -0.29 -14.61 16 17 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 20 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.04 0.83 5.62 -3.70 -0.02 0.81 16 25 C 0.07 1.17 6.45 -3.60 -0.02 1.15 16 26 N -0.25 -3.50 11.10 32.07 0.36 -3.14 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.62 8.02 -51.93 -0.42 0.20 16 33 H 0.07 0.12 7.34 -51.93 -0.38 -0.26 16 34 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.22 0.89 7.53 -52.49 -0.39 0.50 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.09 1.54 7.08 -51.93 -0.37 1.17 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 2.08 6.67 -51.93 -0.35 1.73 16 41 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 42 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 46 H 0.15 2.19 3.77 -75.94 -0.29 1.90 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 375.98 15.07 5.67 5.67 Total: -1.00 -35.37 375.98 -9.73 -45.09 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -7.60 Total: -3.72 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -2.09 Total: 9.46 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.77 Total: -62.41 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.37 -9.73 -45.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.482 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds