Wall clock time and date at job start Fri Apr 10 2020 18:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47261 * 2 1 4 4 C 1.53003 * 109.47364 * 239.99630 * 2 1 3 5 5 N 1.46499 * 109.46938 * 119.99643 * 2 1 3 6 6 C 1.34587 * 125.74834 * 74.99884 * 5 2 1 7 7 N 1.30866 * 107.62601 * 179.75249 * 6 5 2 8 8 C 1.34554 * 107.27014 * 0.24591 * 7 6 5 9 9 C 1.47863 * 126.04829 * 179.97438 * 8 7 6 10 10 O 1.21555 * 120.00309 * 172.92121 * 9 8 7 11 11 N 1.34780 * 120.00370 * 352.92824 * 9 8 7 12 12 C 1.47079 * 120.88336 * 183.52483 * 11 9 8 13 13 C 1.53693 * 108.27930 * 128.75030 * 12 11 9 14 14 N 1.46904 * 109.25662 * 54.08012 * 13 12 11 15 15 C 1.46904 * 111.00036 * 172.60938 * 14 13 12 16 16 C 1.50702 * 109.46692 * 294.30191 * 15 14 13 17 17 H 1.07997 * 120.00237 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99628 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99991 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99917 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47001 * 59.99789 * 20 18 16 22 22 H 1.48495 * 109.46850 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46731 * 300.00036 * 20 18 16 24 24 C 1.46896 * 111.27019 * 296.75769 * 14 13 12 25 25 C 1.47080 * 120.87671 * 3.79580 * 11 9 8 26 26 N 1.28855 * 125.75005 * 255.18593 * 5 2 1 27 27 H 1.09003 * 109.47141 * 300.00212 * 1 2 3 28 28 H 1.09000 * 109.47106 * 60.00193 * 1 2 3 29 29 H 1.08996 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47012 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46447 * 299.99826 * 3 2 1 32 32 H 1.08996 * 109.46979 * 59.99537 * 3 2 1 33 33 H 1.08998 * 109.46807 * 300.00385 * 4 2 1 34 34 H 1.09000 * 109.46865 * 60.00029 * 4 2 1 35 35 H 1.09002 * 109.47087 * 180.02562 * 4 2 1 36 36 H 1.07998 * 126.18567 * 0.02562 * 6 5 2 37 37 H 1.08998 * 109.62671 * 248.52053 * 12 11 9 38 38 H 1.09002 * 109.62928 * 9.09482 * 12 11 9 39 39 H 1.09001 * 109.65020 * 294.07699 * 13 12 11 40 40 H 1.09002 * 109.42275 * 173.94498 * 13 12 11 41 41 H 1.08993 * 109.47099 * 54.30217 * 15 14 13 42 42 H 1.09002 * 109.46897 * 174.30244 * 15 14 13 43 43 H 0.96996 * 119.99778 * 180.02562 * 19 18 16 44 44 H 1.09005 * 109.49430 * 303.14775 * 24 14 13 45 45 H 1.08996 * 109.49523 * 183.06307 * 24 14 13 46 46 H 1.09000 * 109.63104 * 350.89589 * 25 11 9 47 47 H 1.09000 * 109.62615 * 111.48170 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 2.0138 -2.0220 1.3924 7 7 2.5326 -2.2505 2.5719 8 6 2.8522 -1.0575 3.1056 9 6 3.4665 -0.8341 4.4320 10 8 3.8281 0.2808 4.7544 11 7 3.6256 -1.8666 5.2835 12 6 4.1630 -1.6538 6.6360 13 6 3.2098 -2.3163 7.6433 14 7 3.0105 -3.7228 7.2689 15 6 2.2478 -4.4390 8.3000 16 6 3.0600 -4.5093 9.5675 17 1 4.0441 -4.0659 9.6035 18 6 2.5467 -5.1398 10.6811 19 7 1.3484 -5.6802 10.6370 20 14 3.5537 -5.2276 12.2520 21 1 3.8541 -3.8523 12.7249 22 1 2.7826 -5.9515 13.2943 23 1 4.8245 -5.9482 11.9856 24 6 2.3592 -3.8379 5.9572 25 6 3.2719 -3.2369 4.8829 26 7 2.5213 -0.1253 2.2392 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 1.6520 -2.7674 0.6996 37 1 5.1523 -2.1051 6.7120 38 1 4.2285 -0.5851 6.8400 39 1 2.2507 -1.7984 7.6355 40 1 3.6439 -2.2637 8.6417 41 1 1.3150 -3.9101 8.4951 42 1 2.0273 -5.4486 7.9532 43 1 0.9872 -6.1234 11.4205 44 1 1.4120 -3.2988 5.9728 45 1 2.1765 -4.8887 5.7328 46 1 2.7477 -3.2152 3.9274 47 1 4.1771 -3.8374 4.7937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602202815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:34 Heat of formation + Delta-G solvation = 58.105134 kcal Electronic energy + Delta-G solvation = -27570.113193 eV Core-core repulsion = 23789.842551 eV Total energy + Delta-G solvation = -3780.270642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.61299 -41.11498 -38.99923 -38.23769 -36.08237 -34.46532 -33.70667 -32.45977 -31.71565 -30.09148 -28.48118 -28.38898 -27.44745 -25.90841 -24.42878 -24.08533 -23.58650 -22.03891 -21.12167 -20.29016 -18.59968 -18.31229 -17.83728 -17.65270 -17.20606 -16.67434 -16.29894 -16.09059 -15.82855 -15.42084 -15.34752 -15.13731 -14.96645 -14.86170 -14.37579 -14.16364 -13.91042 -13.47535 -13.29610 -13.22982 -13.16259 -12.88939 -12.77035 -12.75535 -12.56725 -12.43633 -12.37446 -12.34019 -12.21546 -11.97996 -11.79792 -11.50104 -11.46923 -11.39453 -10.67363 -10.61021 -10.56877 -9.83061 -9.06672 -8.19798 -6.29955 0.27494 1.04906 1.13443 1.42696 1.45959 1.53665 1.82101 2.17496 2.41371 2.90451 3.12332 3.22304 3.27995 3.65463 3.67321 3.78642 3.84900 3.99117 4.06673 4.24412 4.37122 4.43411 4.48172 4.58799 4.59830 4.61750 4.69933 4.74705 4.79252 4.82146 4.84309 4.91082 4.98490 5.03808 5.12450 5.14989 5.21627 5.22512 5.25110 5.37272 5.50062 5.64434 5.85788 6.03274 6.14850 6.30426 6.58155 6.77422 6.85149 7.07248 7.39579 8.91307 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.002502 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.437957 B =11186.690424 C =11643.430400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 C -0.149 4.149 4 C -0.155 4.155 5 N -0.285 5.285 6 C 0.206 3.794 7 N -0.499 5.499 8 C 0.121 3.879 9 C 0.607 3.393 10 O -0.566 6.566 11 N -0.588 5.588 12 C 0.126 3.874 13 C 0.058 3.942 14 N -0.540 5.540 15 C 0.209 3.791 16 C -0.524 4.524 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.045 3.955 25 C 0.083 3.917 26 N -0.269 5.269 27 H 0.044 0.956 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.275 0.725 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.009 0.991 40 H 0.086 0.914 41 H -0.043 1.043 42 H 0.011 0.989 43 H 0.264 0.736 44 H 0.011 0.989 45 H 0.088 0.912 46 H 0.166 0.834 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 9.164 -30.094 31.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.077 3.923 3 C -0.207 4.207 4 C -0.213 4.213 5 N -0.081 5.081 6 C -0.087 4.087 7 N -0.225 5.225 8 C -0.157 4.157 9 C 0.392 3.608 10 O -0.444 6.444 11 N -0.320 5.320 12 C 0.003 3.997 13 C -0.071 4.071 14 N -0.264 5.264 15 C 0.083 3.917 16 C -0.563 4.563 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.575 5.575 20 Si 0.795 3.205 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.084 4.084 25 C -0.039 4.039 26 N -0.109 5.109 27 H 0.063 0.937 28 H 0.132 0.868 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.290 0.710 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.027 0.973 40 H 0.104 0.896 41 H -0.025 1.025 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.029 0.971 45 H 0.106 0.894 46 H 0.182 0.818 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.810 9.823 -29.596 31.194 hybrid contribution -0.749 0.053 1.399 1.588 sum -1.559 9.876 -28.197 29.917 Atomic orbital electron populations 1.22300 0.90206 1.04685 1.04311 1.21692 0.96401 0.94052 0.80185 1.22019 1.01526 0.93075 1.04037 1.22310 1.02017 1.02372 0.94623 1.48196 1.40107 1.06765 1.13063 1.27400 0.98785 0.86983 0.95514 1.70649 1.18842 1.24440 1.08611 1.23288 1.07953 0.86880 0.97576 1.16706 0.78175 0.83890 0.82023 1.90749 1.52365 1.24370 1.76896 1.48021 1.61789 1.08359 1.13794 1.21890 0.97242 1.01296 0.79228 1.22346 0.97177 0.88239 0.99328 1.62060 1.49858 1.11826 1.02698 1.19375 0.90516 0.92081 0.89715 1.21440 1.02673 1.35868 0.96276 0.91567 1.25928 0.96171 0.94926 1.02639 1.70083 1.18011 1.38195 1.31244 0.85420 0.78550 0.78571 0.77984 1.19342 1.20938 1.19122 1.22481 0.94823 1.01161 0.89920 1.23174 1.00405 0.79276 1.01027 1.74220 1.14098 1.26156 0.96426 0.93727 0.86770 0.89884 0.92905 0.87144 0.93179 0.88974 0.86770 0.92266 0.70984 0.89352 0.89061 0.97279 0.89564 1.02522 0.97131 0.92680 0.97070 0.89401 0.81817 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 8.72 71.98 0.63 -0.22 16 2 C 0.16 1.35 1.23 3.60 0.00 1.36 16 3 C -0.15 -1.63 8.05 71.98 0.58 -1.06 16 4 C -0.16 -0.28 8.28 71.98 0.60 0.32 16 5 N -0.28 -4.94 3.17 -311.59 -0.99 -5.93 16 6 C 0.21 3.09 11.71 180.30 2.11 5.20 16 7 N -0.50 -12.20 7.73 -193.04 -1.49 -13.69 16 8 C 0.12 3.79 7.72 137.12 1.06 4.84 16 9 C 0.61 22.51 7.72 86.79 0.67 23.18 16 10 O -0.57 -24.11 16.55 -3.89 -0.06 -24.17 16 11 N -0.59 -20.92 3.00 -820.41 -2.46 -23.39 16 12 C 0.13 4.56 6.62 86.50 0.57 5.13 16 13 C 0.06 2.46 5.47 86.54 0.47 2.93 16 14 N -0.54 -24.44 4.62 -898.85 -4.15 -28.60 16 15 C 0.21 11.47 4.72 85.56 0.40 11.87 16 16 C -0.52 -30.11 8.41 25.60 0.22 -29.89 16 17 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 18 C 0.00 0.08 5.46 84.66 0.46 0.54 16 19 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 20 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C 0.05 1.72 5.62 86.39 0.49 2.21 16 25 C 0.08 2.68 6.45 86.35 0.56 3.24 16 26 N -0.27 -7.53 11.10 -52.44 -0.58 -8.12 16 27 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.05 0.82 8.02 -2.39 -0.02 0.80 16 33 H 0.09 -0.18 7.34 -2.39 -0.02 -0.20 16 34 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.27 0.73 7.53 -2.91 -0.02 0.71 16 37 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.09 3.27 7.08 -2.39 -0.02 3.25 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.09 3.80 6.67 -2.39 -0.02 3.79 16 41 H -0.04 -2.59 8.12 -2.39 -0.02 -2.61 16 42 H 0.01 0.62 7.97 -2.39 -0.02 0.60 16 43 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 45 H 0.09 3.18 7.99 -2.39 -0.02 3.16 16 46 H 0.17 4.79 3.77 -49.80 -0.19 4.60 16 47 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -80.66 375.98 2.17 -78.49 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 0.78 Total: 5.62 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 8.82 Total: 29.65 kcal Atomic # 7 Polarization: -127.06 SS G_CDS: -9.39 Total: -136.45 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.06 Total: -24.17 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -80.66 2.17 -78.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.599 kcal (2) G-P(sol) polarization free energy of solvation -80.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds