Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47492 * 2 1 4 4 C 1.50701 * 109.47291 * 120.00118 * 2 1 3 5 5 O 1.21278 * 120.00198 * 246.03200 * 4 2 1 6 6 N 1.34777 * 119.99974 * 66.02485 * 4 2 1 7 7 C 1.47084 * 120.88163 * 355.33929 * 6 4 2 8 8 C 1.53697 * 108.27639 * 128.75210 * 7 6 4 9 9 N 1.46898 * 109.25607 * 54.08287 * 8 7 6 10 10 C 1.46897 * 111.00245 * 172.60784 * 9 8 7 11 11 C 1.50702 * 109.47046 * 294.30479 * 10 9 8 12 12 H 1.08000 * 120.00270 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00081 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00372 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00320 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47053 * 59.99916 * 15 13 11 17 17 H 1.48497 * 109.47748 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47104 * 300.00268 * 15 13 11 19 19 C 1.46895 * 111.27319 * 296.75951 * 9 8 7 20 20 C 1.47079 * 120.88364 * 175.61753 * 6 4 2 21 21 N 1.46504 * 109.47063 * 240.00212 * 2 1 3 22 22 C 1.36887 * 125.31220 * 230.87646 * 21 2 1 23 23 C 1.34286 * 109.51219 * 179.87936 * 22 21 2 24 24 C 1.46747 * 107.47147 * 0.37310 * 23 22 21 25 25 N 1.30891 * 126.84715 * 179.79011 * 24 23 22 26 26 N 1.38431 * 106.30060 * 359.76951 * 24 23 22 27 27 H 0.97001 * 126.32959 * 179.97438 * 26 24 23 28 28 H 1.08999 * 109.46974 * 306.13553 * 1 2 3 29 29 H 1.09004 * 109.46918 * 66.12920 * 1 2 3 30 30 H 1.08992 * 109.47266 * 186.13140 * 1 2 3 31 31 H 1.08999 * 109.47117 * 175.40613 * 3 2 1 32 32 H 1.08998 * 109.46838 * 295.41229 * 3 2 1 33 33 H 1.09001 * 109.46776 * 55.40726 * 3 2 1 34 34 H 1.08999 * 109.62824 * 248.52540 * 7 6 4 35 35 H 1.09005 * 109.62365 * 9.10603 * 7 6 4 36 36 H 1.09006 * 109.64808 * 294.08330 * 8 7 6 37 37 H 1.09000 * 109.44273 * 173.96532 * 8 7 6 38 38 H 1.09004 * 109.47176 * 54.30306 * 10 9 8 39 39 H 1.09000 * 109.47357 * 174.30685 * 10 9 8 40 40 H 0.96992 * 120.00524 * 180.02562 * 14 13 11 41 41 H 1.09001 * 109.49125 * 303.14299 * 19 9 8 42 42 H 1.09003 * 109.49870 * 183.06396 * 19 9 8 43 43 H 1.09000 * 109.62774 * 350.90222 * 20 6 4 44 44 H 1.09003 * 109.62848 * 111.47620 * 20 6 4 45 45 H 1.08004 * 125.24551 * 0.02562 * 22 21 2 46 46 H 1.08005 * 126.26763 * 180.14699 * 23 22 21 47 47 H 0.96996 * 120.00767 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6367 -0.0941 2.0823 6 7 1.8098 -2.0308 1.3843 7 6 0.9926 -2.7766 0.4151 8 6 1.7855 -4.0151 -0.0318 9 7 2.1963 -4.7807 1.1527 10 6 2.8041 -6.0613 0.7672 11 6 1.7648 -6.9330 0.1105 12 1 0.7541 -6.5717 -0.0090 13 6 2.1046 -8.1914 -0.3389 14 7 3.3355 -8.6313 -0.1940 15 14 0.8167 -9.2717 -1.1536 16 1 0.2909 -8.5888 -2.3629 17 1 1.4309 -10.5663 -1.5432 18 1 -0.2960 -9.5189 -0.2016 19 6 3.1063 -4.0008 2.0021 20 6 2.3727 -2.7629 2.5290 21 7 2.0183 -0.6906 -1.1962 22 6 2.9466 -1.6966 -1.2056 23 6 3.1578 -2.1003 -2.4688 24 6 2.3047 -1.2843 -3.3405 25 7 2.2157 -1.3586 -4.6443 26 7 1.6128 -0.4206 -2.5090 27 1 0.9667 0.2484 -2.7848 28 1 -0.3633 0.6060 0.8300 29 1 -0.3633 0.4159 -0.9398 30 1 -0.3633 -1.0217 0.1098 31 1 3.1269 1.4435 0.0823 32 1 1.7454 1.9320 -0.9282 33 1 1.6111 1.9795 0.8460 34 1 0.0588 -3.0856 0.8847 35 1 0.7806 -2.1451 -0.4476 36 1 2.6696 -3.7033 -0.5880 37 1 1.1568 -4.6384 -0.6677 38 1 3.6207 -5.8801 0.0682 39 1 3.1900 -6.5622 1.6550 40 1 3.5746 -9.5164 -0.5104 41 1 3.9720 -3.6892 1.4176 42 1 3.4352 -4.6134 2.8416 43 1 3.0734 -2.1223 3.0646 44 1 1.5689 -3.0706 3.1979 45 1 3.4323 -2.1046 -0.3315 46 1 3.8346 -2.8800 -2.7856 47 1 2.7502 -2.0054 -5.1309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602605144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = 107.708545 kcal Electronic energy + Delta-G solvation = -29400.675517 eV Core-core repulsion = 25622.555841 eV Total energy + Delta-G solvation = -3778.119676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79497 -39.75327 -37.94730 -35.84253 -34.58582 -33.06913 -32.48027 -31.67005 -30.65713 -28.56560 -28.13795 -27.74876 -25.86598 -23.67458 -23.36392 -22.05687 -21.68490 -21.07060 -20.19222 -19.36635 -18.06576 -16.66803 -16.48163 -16.06706 -15.55112 -15.47951 -15.16574 -14.85878 -14.63117 -14.61972 -14.19716 -13.97644 -13.78590 -13.59933 -13.39130 -13.24724 -12.84974 -12.75123 -12.47886 -12.44782 -12.19442 -11.99821 -11.83533 -11.37624 -11.21290 -11.05631 -10.87907 -10.71205 -10.63808 -10.45556 -10.04407 -9.86629 -9.47030 -9.35353 -9.09368 -8.74691 -8.49872 -7.41964 -7.10662 -6.10050 -4.12294 1.30749 1.77223 2.40937 2.67044 3.29493 3.30916 3.34330 3.36379 3.64077 3.94680 4.28453 4.35130 4.38206 4.60894 4.67985 5.01066 5.09317 5.13322 5.15377 5.21541 5.27463 5.28154 5.33055 5.41208 5.48561 5.55226 5.59135 5.71026 5.72886 5.77892 5.83923 5.96115 6.02259 6.12034 6.29393 6.33153 6.48772 6.83731 7.11544 7.16719 7.21704 7.29030 7.67491 7.68434 7.79984 7.92930 8.04259 8.40086 8.65034 8.94026 9.52694 11.00570 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.004543 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.965624 B = 6161.922461 C = 7423.871127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.181 3.819 3 C -0.146 4.146 4 C 0.519 3.481 5 O -0.526 6.526 6 N -0.598 5.598 7 C 0.087 3.913 8 C 0.043 3.957 9 N -0.535 5.535 10 C 0.195 3.805 11 C -0.511 4.511 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.897 5.897 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.040 3.960 20 C 0.115 3.885 21 N -0.406 5.406 22 C 0.150 3.850 23 C -0.320 4.320 24 C 0.451 3.549 25 N -0.798 5.798 26 N -0.511 5.511 27 H 0.439 0.561 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.098 0.902 38 H -0.007 1.007 39 H 0.032 0.968 40 H 0.263 0.737 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.177 0.823 46 H 0.157 0.843 47 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 17.893 1.562 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.094 3.906 3 C -0.205 4.205 4 C 0.303 3.697 5 O -0.401 6.401 6 N -0.331 5.331 7 C -0.036 4.036 8 C -0.085 4.085 9 N -0.260 5.260 10 C 0.071 3.929 11 C -0.550 4.550 12 H 0.080 0.920 13 C -0.143 4.143 14 N -0.536 5.536 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.090 4.090 20 C -0.007 4.007 21 N -0.203 5.203 22 C 0.020 3.980 23 C -0.354 4.354 24 C 0.176 3.824 25 N -0.437 5.437 26 N -0.248 5.248 27 H 0.285 0.715 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.058 0.942 37 H 0.116 0.884 38 H 0.010 0.990 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.194 0.806 46 H 0.174 0.826 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.321 18.676 1.829 19.257 hybrid contribution 0.451 -1.139 -0.766 1.444 sum -3.870 17.538 1.063 17.991 Atomic orbital electron populations 1.22472 0.91448 1.05030 1.04132 1.20837 0.96360 0.93440 0.79927 1.22077 1.03195 0.92238 1.02982 1.20000 0.80125 0.82294 0.87298 1.90735 1.40792 1.65232 1.43359 1.48375 1.50646 1.07271 1.26812 1.22686 0.94682 0.94030 0.92152 1.22667 0.99394 0.93169 0.93319 1.62086 1.40950 1.05016 1.17966 1.19716 0.93905 0.83703 0.95608 1.21056 0.96448 0.99440 1.38007 0.91969 1.24960 0.95403 0.97869 0.96093 1.69931 1.17752 1.18889 1.47010 0.86584 0.81538 0.79628 0.79820 1.20195 1.21325 1.20184 1.22430 0.93816 0.94115 0.98607 1.21900 0.98654 0.92649 0.87492 1.46132 1.41861 1.36501 0.95807 1.22251 0.89011 0.86876 0.99855 1.22809 1.10960 1.09197 0.92442 1.19881 0.87205 0.86134 0.89230 1.69099 1.37126 1.34692 1.02764 1.43626 1.46559 1.40620 0.93950 0.71466 0.89755 0.90711 0.89851 0.90884 0.91427 0.89969 0.90343 0.88473 0.94161 0.88428 0.98964 0.95022 0.92770 0.95579 0.89671 0.89176 0.90401 0.80641 0.82556 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 8.22 37.16 0.31 -1.01 16 2 C 0.18 1.76 0.90 -132.97 -0.12 1.64 16 3 C -0.15 -1.27 8.10 37.16 0.30 -0.97 16 4 C 0.52 6.35 5.62 -10.98 -0.06 6.29 16 5 O -0.53 -7.72 15.47 5.56 0.09 -7.63 16 6 N -0.60 -7.49 2.11 -172.18 -0.36 -7.85 16 7 C 0.09 1.12 4.04 -3.36 -0.01 1.11 16 8 C 0.04 0.72 4.92 -3.46 -0.02 0.70 16 9 N -0.53 -10.03 4.62 -235.47 -1.09 -11.12 16 10 C 0.20 4.66 4.72 -4.98 -0.02 4.64 16 11 C -0.51 -13.40 8.41 -34.44 -0.29 -13.69 16 12 H 0.06 1.61 7.13 -52.49 -0.37 1.23 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 15 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 19 C 0.04 0.62 5.62 -3.70 -0.02 0.59 16 20 C 0.12 1.51 6.58 -3.60 -0.02 1.48 16 21 N -0.41 -4.38 2.11 -49.49 -0.10 -4.49 16 22 C 0.15 1.89 6.29 -16.69 -0.10 1.78 16 23 C -0.32 -4.32 10.60 -37.54 -0.40 -4.71 16 24 C 0.45 6.20 8.65 -153.74 -1.33 4.87 16 25 N -0.80 -11.95 14.17 32.44 0.46 -11.49 16 26 N -0.51 -5.60 7.04 32.40 0.23 -5.37 16 27 H 0.44 3.87 8.57 -182.65 -1.57 2.30 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.46 7.59 -51.93 -0.39 0.07 16 30 H 0.08 0.70 5.27 -51.93 -0.27 0.43 16 31 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.15 3.45 -51.93 -0.18 0.97 16 36 H 0.04 0.67 4.57 -51.93 -0.24 0.43 16 37 H 0.10 1.84 6.67 -51.93 -0.35 1.50 16 38 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 39 H 0.03 0.82 7.97 -51.93 -0.41 0.40 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 43 H 0.09 1.15 7.09 -51.93 -0.37 0.78 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.18 2.32 5.60 -52.48 -0.29 2.03 16 46 H 0.16 2.07 8.06 -52.48 -0.42 1.65 16 47 H 0.35 4.97 8.92 -40.82 -0.36 4.60 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -30.43 360.00 -9.69 -40.13 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.16 Total: 7.17 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -1.89 Total: 4.20 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -0.13 Total: -65.16 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.43 -9.69 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602605144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.834 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds