Wall clock time and date at job start Fri Apr 10 2020 18:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00067 * 2 1 4 4 C 1.52784 * 109.42409 * 187.11427 * 3 2 1 5 5 N 1.47087 * 108.76501 * 306.42561 * 4 3 2 6 6 C 1.34776 * 120.87856 * 231.12056 * 5 4 3 7 7 O 1.21845 * 119.99450 * 179.72683 * 6 5 4 8 8 N 1.33830 * 120.00372 * 359.71863 * 6 5 4 9 9 C 1.32928 * 120.00162 * 179.97438 * 8 6 5 10 10 C 1.41213 * 126.37767 * 359.69325 * 9 8 6 11 11 C 1.34954 * 108.24269 * 180.26297 * 10 9 8 12 12 N 1.36451 * 108.95312 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.85668 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47234 * 274.97452 * 13 12 11 15 15 H 1.08007 * 119.99535 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00285 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99800 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00010 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47425 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47330 * 119.99829 * 18 16 14 21 21 H 1.48504 * 109.47324 * 239.99682 * 18 16 14 22 22 N 1.37425 * 126.38159 * 180.02562 * 9 8 6 23 23 H 0.97000 * 126.36166 * 359.75382 * 22 9 8 24 24 C 1.47080 * 118.23588 * 50.85234 * 5 4 3 25 25 C 1.46897 * 111.00426 * 124.30203 * 2 1 3 26 26 C 1.53006 * 109.48829 * 52.78227 * 25 2 1 27 27 C 1.52996 * 109.49405 * 292.70983 * 25 2 1 28 28 H 1.09004 * 109.47137 * 295.70290 * 1 2 3 29 29 H 1.09003 * 109.46993 * 55.69475 * 1 2 3 30 30 H 1.09001 * 109.47268 * 175.69528 * 1 2 3 31 31 H 1.08996 * 109.49603 * 307.21395 * 3 2 1 32 32 H 1.09002 * 109.49231 * 67.26959 * 3 2 1 33 33 H 1.09004 * 109.55991 * 186.60948 * 4 3 2 34 34 H 1.09001 * 109.46057 * 66.18051 * 4 3 2 35 35 H 1.08001 * 125.87379 * 0.22585 * 10 9 8 36 36 H 1.08004 * 125.52286 * 179.97438 * 11 10 9 37 37 H 1.09002 * 109.46867 * 34.97508 * 13 12 11 38 38 H 1.09003 * 109.47508 * 154.97021 * 13 12 11 39 39 H 0.96998 * 120.00120 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.62898 * 68.79432 * 24 5 4 41 41 H 1.09000 * 109.62711 * 189.37497 * 24 5 4 42 42 H 1.08998 * 109.47218 * 179.86463 * 26 25 2 43 43 H 1.08991 * 109.47338 * 299.86924 * 26 25 2 44 44 H 1.09000 * 109.46967 * 59.87361 * 26 25 2 45 45 H 1.09005 * 109.46944 * 300.13244 * 27 25 2 46 46 H 1.09002 * 109.47577 * 60.12790 * 27 25 2 47 47 H 1.08997 * 109.47632 * 180.13029 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5123 1.3334 -0.1785 5 7 4.0869 0.4460 0.8442 6 6 5.1056 0.8582 1.6244 7 8 5.5661 0.1115 2.4700 8 7 5.6114 2.0877 1.4704 9 6 6.6158 2.4944 2.2403 10 6 7.2444 1.7477 3.2608 11 6 8.2111 2.5129 3.8098 12 7 8.2280 3.7240 3.1815 13 6 9.1332 4.8353 3.4844 14 6 8.5662 5.6503 4.6181 15 1 7.6253 5.3688 5.0677 16 6 9.2479 6.7559 5.0807 17 7 10.3932 7.0989 4.5329 18 14 8.5454 7.7657 6.4864 19 1 7.2555 7.1743 6.9245 20 1 9.5018 7.7653 7.6224 21 1 8.3200 9.1606 6.0296 22 7 7.2315 3.7222 2.1958 23 1 7.0162 4.4521 1.5942 24 6 3.5163 -0.9011 0.9967 25 6 1.9955 -0.7728 1.1328 26 6 1.3640 -2.1665 1.1375 27 6 1.6587 -0.0549 2.4412 28 1 -0.3633 0.4457 0.9260 29 1 -0.3633 0.5792 -0.8489 30 1 -0.3634 -1.0248 -0.0771 31 1 1.5456 1.9337 -0.8183 32 1 1.7551 1.8533 0.9477 33 1 3.9188 2.3380 -0.0617 34 1 3.7517 0.9515 -1.1709 35 1 6.9941 0.7383 3.5522 36 1 8.8648 2.2151 4.6163 37 1 10.1081 4.4417 3.7720 38 1 9.2420 5.4662 2.6022 39 1 10.8730 7.8764 4.8585 40 1 3.7561 -1.5017 0.1194 41 1 3.9255 -1.3730 1.8900 42 1 1.7566 -2.7405 1.9768 43 1 0.2822 -2.0749 1.2344 44 1 1.6034 -2.6769 0.2046 45 1 2.1078 0.9384 2.4367 46 1 0.5767 0.0361 2.5378 47 1 2.0515 -0.6274 3.2815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602852882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:44 Heat of formation + Delta-G solvation = 94.740691 kcal Electronic energy + Delta-G solvation = -27552.993198 eV Core-core repulsion = 23774.311193 eV Total energy + Delta-G solvation = -3778.682005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78406 -40.16477 -38.19782 -34.64792 -34.09625 -33.24052 -32.76159 -31.01456 -30.59993 -28.89594 -27.38583 -27.23643 -26.35137 -24.37240 -23.10936 -22.59459 -21.49868 -21.16327 -19.30859 -18.25622 -17.17593 -16.82720 -16.32542 -16.09925 -15.63330 -15.20631 -14.98720 -14.62329 -14.55007 -14.48779 -14.29522 -14.03915 -13.51133 -13.24023 -13.10157 -12.76960 -12.58544 -12.45487 -12.29293 -12.02395 -11.96128 -11.86306 -11.66813 -11.35178 -11.30528 -11.15461 -11.08577 -10.96509 -10.61843 -10.53583 -10.36952 -9.65260 -9.55017 -9.00965 -8.92527 -8.51153 -8.28011 -8.05063 -6.86204 -6.47712 -4.65232 1.81106 2.10580 3.04176 3.13616 3.16716 3.19975 3.42285 3.84055 4.06362 4.43694 4.58993 4.74936 4.81621 4.86605 4.94380 5.05538 5.20618 5.29148 5.32973 5.43475 5.48160 5.51196 5.54956 5.65298 5.73070 5.73816 5.75541 5.87692 5.97395 5.99523 6.02891 6.05662 6.10798 6.27739 6.31866 6.54636 6.57551 6.75953 6.95010 7.01774 7.15433 7.33399 7.40227 7.52116 7.65732 7.86220 8.26326 8.44451 8.50484 9.05401 9.62473 10.52753 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023254 B = 0.002510 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.822529 B =11150.940819 C =11467.514237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.530 5.530 3 C 0.035 3.965 4 C 0.130 3.870 5 N -0.611 5.611 6 C 0.690 3.310 7 O -0.632 6.632 8 N -0.711 5.711 9 C 0.486 3.514 10 C -0.333 4.333 11 C 0.161 3.839 12 N -0.347 5.347 13 C 0.255 3.745 14 C -0.556 4.556 15 H 0.070 0.930 16 C 0.069 3.931 17 N -0.887 5.887 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.280 1.280 22 N -0.472 5.472 23 H 0.444 0.556 24 C 0.146 3.854 25 C 0.091 3.909 26 C -0.139 4.139 27 C -0.175 4.175 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.182 0.818 36 H 0.186 0.814 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.271 0.729 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.233 -11.189 -7.144 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.255 5.255 3 C -0.093 4.093 4 C 0.006 3.994 5 N -0.346 5.346 6 C 0.391 3.609 7 O -0.514 6.514 8 N -0.475 5.475 9 C 0.233 3.767 10 C -0.366 4.366 11 C 0.016 3.984 12 N -0.132 5.132 13 C 0.139 3.861 14 C -0.595 4.595 15 H 0.088 0.912 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.205 1.205 22 N -0.195 5.195 23 H 0.290 0.710 24 C 0.021 3.979 25 C 0.001 3.999 26 C -0.197 4.197 27 C -0.233 4.233 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.199 0.801 36 H 0.203 0.797 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.858 -10.881 -7.752 18.542 hybrid contribution -0.529 1.166 1.625 2.069 sum -13.387 -9.715 -6.127 17.639 Atomic orbital electron populations 1.22444 0.87984 1.02171 1.00283 1.62208 1.07295 1.13695 1.42279 1.22528 0.96547 0.89278 1.00990 1.21442 0.90685 0.96264 0.90991 1.46785 1.35518 1.14465 1.37862 1.16515 0.80103 0.84340 0.79971 1.90715 1.63053 1.59565 1.38072 1.68008 1.21598 1.19979 1.37917 1.18727 0.87042 0.82599 0.88341 1.22382 1.04268 1.04849 1.05124 1.22793 0.97407 0.83356 0.94820 1.47960 1.25408 1.15221 1.24658 1.20028 0.86651 0.81523 0.97921 1.21460 1.08472 1.11716 1.17819 0.91205 1.24955 0.94599 0.96812 0.97194 1.69904 1.14280 1.26813 1.41362 0.86252 0.79340 0.79676 0.81197 1.19408 1.20397 1.20539 1.44427 1.28894 1.15293 1.30849 0.70952 1.21444 0.89860 0.84104 1.02484 1.21466 0.95550 0.93992 0.88913 1.21876 1.00420 0.94953 1.02481 1.22366 1.00725 1.02096 0.98128 0.95581 0.91684 0.91086 0.90200 0.94038 0.87951 0.92358 0.80062 0.79707 0.91457 0.93136 0.91915 0.91939 0.88983 0.91886 0.92279 0.91651 0.91841 0.93005 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 8.76 60.06 0.53 0.70 16 2 N -0.53 -5.86 4.68 -227.17 -1.06 -6.92 16 3 C 0.04 0.41 5.23 -3.93 -0.02 0.39 16 4 C 0.13 1.78 6.56 -3.83 -0.03 1.76 16 5 N -0.61 -9.92 2.48 -178.70 -0.44 -10.36 16 6 C 0.69 13.70 8.23 -87.76 -0.72 12.98 16 7 O -0.63 -13.84 12.71 5.06 0.06 -13.77 16 8 N -0.71 -13.97 9.09 -15.79 -0.14 -14.11 16 9 C 0.49 9.46 8.07 -155.29 -1.25 8.21 16 10 C -0.33 -6.29 9.52 -39.62 -0.38 -6.67 16 11 C 0.16 2.75 11.45 -16.66 -0.19 2.56 16 12 N -0.35 -6.45 3.63 -62.24 -0.23 -6.68 16 13 C 0.26 5.32 6.19 -5.20 -0.03 5.29 16 14 C -0.56 -13.24 9.39 -34.44 -0.32 -13.57 16 15 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 16 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -22.53 13.29 55.43 0.74 -21.80 16 18 Si 0.91 19.28 29.54 -169.99 -5.02 14.26 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 N -0.47 -8.43 7.38 31.33 0.23 -8.20 16 23 H 0.44 6.97 8.96 -182.55 -1.64 5.34 16 24 C 0.15 2.04 5.28 -3.60 -0.02 2.02 16 25 C 0.09 1.05 0.69 -131.48 -0.09 0.96 16 26 C -0.14 -1.27 8.00 37.16 0.30 -0.97 16 27 C -0.17 -2.16 7.68 37.16 0.29 -1.87 16 28 H 0.03 0.24 6.52 -51.93 -0.34 -0.10 16 29 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.07 0.56 6.21 -51.93 -0.32 0.24 16 31 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 32 H 0.04 0.54 6.10 -51.93 -0.32 0.22 16 33 H 0.10 1.50 6.91 -51.93 -0.36 1.14 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.18 3.63 5.77 -52.49 -0.30 3.33 16 36 H 0.19 2.51 8.06 -52.48 -0.42 2.09 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.42 7.06 -51.93 -0.37 1.05 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.48 6.33 -51.93 -0.33 0.15 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.94 5.92 -51.93 -0.31 0.63 16 46 H 0.05 0.57 6.60 -51.93 -0.34 0.22 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -28.93 368.32 -10.74 -39.67 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -8.39 Total: 8.97 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: -2.04 Total: 13.39 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -0.91 Total: -68.07 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.06 Total: -13.77 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.93 -10.74 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602852882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.413 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds