Wall clock time and date at job start Fri Apr 10 2020 18:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00067 * 2 1 4 4 C 1.52784 * 109.42409 * 187.11427 * 3 2 1 5 5 N 1.47087 * 108.76501 * 306.42561 * 4 3 2 6 6 C 1.34776 * 120.87856 * 231.12056 * 5 4 3 7 7 O 1.21845 * 119.99450 * 179.72683 * 6 5 4 8 8 N 1.33830 * 120.00372 * 359.71863 * 6 5 4 9 9 C 1.32928 * 120.00162 * 179.97438 * 8 6 5 10 10 C 1.41213 * 126.37767 * 359.69325 * 9 8 6 11 11 C 1.34954 * 108.24269 * 180.26297 * 10 9 8 12 12 N 1.36451 * 108.95312 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.85668 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47234 * 274.97452 * 13 12 11 15 15 H 1.08007 * 119.99535 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00285 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99800 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00010 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47425 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47330 * 119.99829 * 18 16 14 21 21 H 1.48504 * 109.47324 * 239.99682 * 18 16 14 22 22 N 1.37425 * 126.38159 * 180.02562 * 9 8 6 23 23 H 0.97000 * 126.36166 * 359.75382 * 22 9 8 24 24 C 1.47080 * 118.23588 * 50.85234 * 5 4 3 25 25 C 1.46897 * 111.00426 * 124.30203 * 2 1 3 26 26 C 1.53006 * 109.48829 * 52.78227 * 25 2 1 27 27 C 1.52996 * 109.49405 * 292.70983 * 25 2 1 28 28 H 1.09004 * 109.47137 * 295.70290 * 1 2 3 29 29 H 1.09003 * 109.46993 * 55.69475 * 1 2 3 30 30 H 1.09001 * 109.47268 * 175.69528 * 1 2 3 31 31 H 1.08996 * 109.49603 * 307.21395 * 3 2 1 32 32 H 1.09002 * 109.49231 * 67.26959 * 3 2 1 33 33 H 1.09004 * 109.55991 * 186.60948 * 4 3 2 34 34 H 1.09001 * 109.46057 * 66.18051 * 4 3 2 35 35 H 1.08001 * 125.87379 * 0.22585 * 10 9 8 36 36 H 1.08004 * 125.52286 * 179.97438 * 11 10 9 37 37 H 1.09002 * 109.46867 * 34.97508 * 13 12 11 38 38 H 1.09003 * 109.47508 * 154.97021 * 13 12 11 39 39 H 0.96998 * 120.00120 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.62898 * 68.79432 * 24 5 4 41 41 H 1.09000 * 109.62711 * 189.37497 * 24 5 4 42 42 H 1.08998 * 109.47218 * 179.86463 * 26 25 2 43 43 H 1.08991 * 109.47338 * 299.86924 * 26 25 2 44 44 H 1.09000 * 109.46967 * 59.87361 * 26 25 2 45 45 H 1.09005 * 109.46944 * 300.13244 * 27 25 2 46 46 H 1.09002 * 109.47577 * 60.12790 * 27 25 2 47 47 H 1.08997 * 109.47632 * 180.13029 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5123 1.3334 -0.1785 5 7 4.0869 0.4460 0.8442 6 6 5.1056 0.8582 1.6244 7 8 5.5661 0.1115 2.4700 8 7 5.6114 2.0877 1.4704 9 6 6.6158 2.4944 2.2403 10 6 7.2444 1.7477 3.2608 11 6 8.2111 2.5129 3.8098 12 7 8.2280 3.7240 3.1815 13 6 9.1332 4.8353 3.4844 14 6 8.5662 5.6503 4.6181 15 1 7.6253 5.3688 5.0677 16 6 9.2479 6.7559 5.0807 17 7 10.3932 7.0989 4.5329 18 14 8.5454 7.7657 6.4864 19 1 7.2555 7.1743 6.9245 20 1 9.5018 7.7653 7.6224 21 1 8.3200 9.1606 6.0296 22 7 7.2315 3.7222 2.1958 23 1 7.0162 4.4521 1.5942 24 6 3.5163 -0.9011 0.9967 25 6 1.9955 -0.7728 1.1328 26 6 1.3640 -2.1665 1.1375 27 6 1.6587 -0.0549 2.4412 28 1 -0.3633 0.4457 0.9260 29 1 -0.3633 0.5792 -0.8489 30 1 -0.3634 -1.0248 -0.0771 31 1 1.5456 1.9337 -0.8183 32 1 1.7551 1.8533 0.9477 33 1 3.9188 2.3380 -0.0617 34 1 3.7517 0.9515 -1.1709 35 1 6.9941 0.7383 3.5522 36 1 8.8648 2.2151 4.6163 37 1 10.1081 4.4417 3.7720 38 1 9.2420 5.4662 2.6022 39 1 10.8730 7.8764 4.8585 40 1 3.7561 -1.5017 0.1194 41 1 3.9255 -1.3730 1.8900 42 1 1.7566 -2.7405 1.9768 43 1 0.2822 -2.0749 1.2344 44 1 1.6034 -2.6769 0.2046 45 1 2.1078 0.9384 2.4367 46 1 0.5767 0.0361 2.5378 47 1 2.0515 -0.6274 3.2815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602852882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:43 Heat of formation + Delta-G solvation = 76.764657 kcal Electronic energy + Delta-G solvation = -27553.772697 eV Core-core repulsion = 23774.311193 eV Total energy + Delta-G solvation = -3779.461504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.25981 -41.29022 -39.53169 -36.07662 -35.56110 -34.69710 -33.93765 -32.47779 -32.21979 -29.91078 -28.65918 -28.26640 -27.67467 -25.48360 -24.65775 -23.68196 -22.91115 -22.60880 -20.63801 -19.30505 -18.89022 -18.39862 -17.66455 -17.40180 -16.76029 -16.61372 -16.52252 -15.93176 -15.80275 -15.52636 -15.46189 -15.32781 -14.78440 -14.54762 -14.32611 -14.28745 -14.04839 -13.64861 -13.54420 -13.12373 -13.08599 -12.93404 -12.80299 -12.75868 -12.61487 -12.33823 -12.22185 -12.11721 -12.03594 -11.93183 -11.60837 -11.20090 -11.15595 -10.77574 -10.49203 -9.82990 -9.61459 -9.14918 -8.52596 -8.17703 -6.55528 0.33072 0.62278 1.36624 1.42022 1.51529 1.69236 2.16202 2.31274 2.90060 2.94456 3.01164 3.15780 3.71205 3.92728 3.93890 4.00648 4.12695 4.21952 4.33582 4.41123 4.43536 4.56899 4.57370 4.66963 4.68840 4.73838 4.81708 4.85276 4.87249 4.87703 4.94661 4.98330 5.02241 5.10278 5.10803 5.23884 5.29121 5.37745 5.52226 5.71549 5.84626 5.89177 6.11018 6.13993 6.18353 6.35149 6.58894 6.85246 7.02316 7.18358 8.11387 8.66808 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023254 B = 0.002510 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.822529 B =11150.940819 C =11467.514237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.533 5.533 3 C 0.043 3.957 4 C 0.129 3.871 5 N -0.609 5.609 6 C 0.676 3.324 7 O -0.661 6.661 8 N -0.715 5.715 9 C 0.471 3.529 10 C -0.347 4.347 11 C 0.176 3.824 12 N -0.351 5.351 13 C 0.268 3.732 14 C -0.564 4.564 15 H 0.058 0.942 16 C 0.030 3.970 17 N -0.913 5.913 18 Si 0.964 3.036 19 H -0.274 1.274 20 H -0.273 1.273 21 H -0.278 1.278 22 N -0.467 5.467 23 H 0.451 0.549 24 C 0.142 3.858 25 C 0.096 3.904 26 C -0.133 4.133 27 C -0.167 4.167 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.026 0.974 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.171 0.829 36 H 0.222 0.778 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.274 0.726 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.033 0.967 46 H 0.068 0.932 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 -11.540 -7.477 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.257 5.257 3 C -0.086 4.086 4 C 0.006 3.994 5 N -0.344 5.344 6 C 0.376 3.624 7 O -0.546 6.546 8 N -0.480 5.480 9 C 0.218 3.782 10 C -0.379 4.379 11 C 0.032 3.968 12 N -0.137 5.137 13 C 0.151 3.849 14 C -0.602 4.602 15 H 0.076 0.924 16 C -0.173 4.173 17 N -0.551 5.551 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.199 1.199 21 H -0.204 1.204 22 N -0.190 5.190 23 H 0.300 0.700 24 C 0.018 3.982 25 C 0.005 3.995 26 C -0.191 4.191 27 C -0.226 4.226 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.188 0.812 36 H 0.238 0.762 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.334 -11.237 -8.119 19.941 hybrid contribution -0.106 1.243 1.686 2.097 sum -14.440 -9.994 -6.433 18.702 Atomic orbital electron populations 1.22528 0.86107 1.03411 1.00779 1.62224 1.08890 1.12962 1.41654 1.22443 0.94973 0.90038 1.01146 1.21541 0.92175 0.95163 0.90561 1.46922 1.34523 1.15516 1.37443 1.16851 0.80903 0.84274 0.80365 1.90685 1.64268 1.60182 1.39468 1.68066 1.21806 1.20039 1.38113 1.18940 0.87322 0.83194 0.88757 1.22273 1.05233 1.04686 1.05736 1.23308 0.96803 0.82071 0.94578 1.47828 1.25489 1.15259 1.25109 1.19721 0.86835 0.81623 0.96695 1.21634 1.07978 1.12153 1.18431 0.92369 1.25591 0.94870 0.97747 0.99052 1.69964 1.15180 1.27424 1.42526 0.85410 0.78477 0.78278 0.78948 1.19827 1.19863 1.20406 1.44384 1.28609 1.15182 1.30850 0.70025 1.21585 0.91698 0.82989 1.01888 1.21417 0.93822 0.95588 0.88659 1.21844 1.01178 0.93082 1.03024 1.22300 1.01484 1.00342 0.98487 0.95751 0.90369 0.89632 0.87813 0.95535 0.89254 0.91436 0.81216 0.76167 0.91135 0.93853 0.91708 0.91107 0.90935 0.91608 0.90637 0.90976 0.94742 0.91271 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.76 127.69 1.12 1.40 16 2 N -0.53 -10.68 4.68 -872.62 -4.08 -14.76 16 3 C 0.04 0.94 5.23 86.23 0.45 1.39 16 4 C 0.13 3.49 6.56 86.20 0.57 4.06 16 5 N -0.61 -20.10 2.48 -837.42 -2.08 -22.18 16 6 C 0.68 27.64 8.23 179.35 1.48 29.12 16 7 O -0.66 -30.04 12.71 -4.81 -0.06 -30.10 16 8 N -0.72 -28.81 9.09 -322.54 -2.93 -31.74 16 9 C 0.47 18.60 8.07 133.95 1.08 19.69 16 10 C -0.35 -13.19 9.52 22.25 0.21 -12.98 16 11 C 0.18 5.87 11.45 83.22 0.95 6.82 16 12 N -0.35 -12.86 3.63 -350.84 -1.28 -14.13 16 13 C 0.27 11.02 6.19 85.63 0.53 11.55 16 14 C -0.56 -26.46 9.39 25.60 0.24 -26.22 16 15 H 0.06 2.84 7.81 -2.91 -0.02 2.81 16 16 C 0.03 1.42 5.46 84.65 0.46 1.89 16 17 N -0.91 -45.83 13.29 21.45 0.28 -45.55 16 18 Si 0.96 38.97 29.54 68.60 2.03 41.00 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 22 N -0.47 -16.67 7.38 -54.78 -0.40 -17.07 16 23 H 0.45 14.23 8.96 -213.28 -1.91 12.31 16 24 C 0.14 3.99 5.28 86.35 0.46 4.45 16 25 C 0.10 2.10 0.69 3.61 0.00 2.10 16 26 C -0.13 -2.12 8.00 71.98 0.58 -1.55 16 27 C -0.17 -4.08 7.68 71.98 0.55 -3.53 16 28 H 0.02 0.37 6.52 -2.39 -0.02 0.36 16 29 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 30 H 0.09 1.03 6.21 -2.39 -0.01 1.01 16 31 H 0.10 1.79 8.06 -2.39 -0.02 1.77 16 32 H 0.03 0.67 6.10 -2.39 -0.01 0.66 16 33 H 0.09 2.65 6.91 -2.38 -0.02 2.63 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.17 6.98 5.77 -2.91 -0.02 6.97 16 36 H 0.22 5.52 8.06 -2.91 -0.02 5.50 16 37 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 2.31 7.06 -2.39 -0.02 2.30 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 0.97 6.33 -2.39 -0.02 0.96 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.03 1.03 5.92 -2.38 -0.01 1.02 16 46 H 0.07 1.41 6.60 -2.39 -0.02 1.40 16 47 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -61.97 368.32 -0.77 -62.73 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -0.92 Total: 33.61 kcal Atomic # 6 Polarization: 29.51 SS G_CDS: 8.68 Total: 38.19 kcal Atomic # 7 Polarization: -134.94 SS G_CDS: -10.49 Total: -145.43 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.06 Total: -30.10 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -61.97 -0.77 -62.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602852882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.499 kcal (2) G-P(sol) polarization free energy of solvation -61.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds