Wall clock time and date at job start Fri Apr 10 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70500 * 2 1 4 4 C 1.53626 * 109.66714 * 120.59145 * 2 1 3 5 5 C 1.53043 * 109.24378 * 174.54911 * 4 2 1 6 6 C 1.53047 * 109.53536 * 298.51105 * 5 4 2 7 7 C 1.53190 * 109.31573 * 61.36456 * 6 5 4 8 8 H 1.08991 * 109.58813 * 185.57918 * 7 6 5 9 9 C 1.53008 * 109.69980 * 65.21932 * 7 6 5 10 10 N 1.46924 * 109.58631 * 239.64182 * 2 1 3 11 11 C 1.34774 * 120.63053 * 6.62752 * 10 2 1 12 12 O 1.21287 * 120.00088 * 5.30144 * 11 10 2 13 13 C 1.50699 * 120.00297 * 185.30119 * 11 10 2 14 14 N 1.46504 * 109.47437 * 174.58706 * 13 11 10 15 15 C 1.35312 * 125.86750 * 124.99722 * 14 13 11 16 16 C 1.35360 * 106.17337 * 180.02562 * 15 14 13 17 17 C 1.50697 * 126.75186 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.46872 * 94.99582 * 17 16 15 19 19 C 1.36938 * 119.99673 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00083 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99933 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00114 * 359.73131 * 21 19 18 23 23 Si 1.86798 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47186 * 179.72607 * 23 21 19 25 25 H 1.48495 * 109.47056 * 299.72914 * 23 21 19 26 26 H 1.48506 * 109.47113 * 59.72894 * 23 21 19 27 27 N 1.33774 * 106.49205 * 0.26068 * 16 15 14 28 28 N 1.28635 * 108.88729 * 359.56797 * 27 16 15 29 29 H 1.08999 * 109.47103 * 172.95876 * 1 2 3 30 30 H 1.09001 * 109.46995 * 292.95339 * 1 2 3 31 31 H 1.08992 * 109.47324 * 52.95065 * 1 2 3 32 32 H 1.09001 * 109.63232 * 54.55538 * 4 2 1 33 33 H 1.09001 * 109.42949 * 294.41710 * 4 2 1 34 34 H 1.08999 * 109.46085 * 178.49325 * 5 4 2 35 35 H 1.08999 * 109.45058 * 58.52297 * 5 4 2 36 36 H 1.09000 * 109.49545 * 301.41236 * 6 5 4 37 37 H 1.08997 * 109.49398 * 181.31776 * 6 5 4 38 38 H 1.09000 * 109.47390 * 300.64090 * 9 7 6 39 39 H 1.08998 * 109.46605 * 60.64542 * 9 7 6 40 40 H 1.08997 * 109.46587 * 180.64210 * 9 7 6 41 41 H 1.09001 * 109.47554 * 54.58928 * 13 11 10 42 42 H 1.09005 * 109.47311 * 294.58915 * 13 11 10 43 43 H 1.07992 * 126.91642 * 0.06271 * 15 14 13 44 44 H 1.09004 * 109.46956 * 335.00213 * 17 16 15 45 45 H 1.08993 * 109.47155 * 214.99806 * 17 16 15 46 46 H 0.97000 * 120.00401 * 0.02562 * 18 17 16 47 47 H 0.97002 * 119.99835 * 0.27156 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2453 5 6 3.5712 -0.8497 1.1676 6 6 3.9615 -1.6628 -0.0689 7 6 3.4656 -0.9421 -1.3265 8 1 3.6531 -1.5638 -2.2018 9 6 4.1982 0.3926 -1.4788 10 7 2.0225 -0.6996 -1.1944 11 6 1.1674 -1.1062 -2.1535 12 8 -0.0072 -0.8122 -2.0831 13 6 1.6706 -1.9262 -3.3134 14 7 0.5378 -2.3483 -4.1411 15 6 0.4012 -2.1288 -5.4693 16 6 -0.7827 -2.6818 -5.8229 17 6 -1.3917 -2.7036 -7.2012 18 7 -1.0490 -3.9630 -7.8665 19 6 -1.4958 -4.2096 -9.1373 20 1 -2.1004 -3.4755 -9.6491 21 6 -1.1715 -5.4031 -9.7676 22 7 -0.4302 -6.2955 -9.1459 23 14 -1.7803 -5.7392 -11.5013 24 1 -1.2950 -7.0700 -11.9470 25 1 -3.2651 -5.7233 -11.5163 26 1 -1.2647 -4.6915 -12.4188 27 7 -1.3079 -3.2004 -4.7073 28 7 -0.4986 -2.9910 -3.7296 29 1 -0.3633 -1.0199 -0.1260 30 1 -0.3633 0.4008 0.9463 31 1 -0.3633 0.6191 -0.8201 32 1 1.6096 -1.7337 1.2890 33 1 1.7689 -0.1770 2.1387 34 1 3.9444 -1.3479 2.0624 35 1 4.0064 0.1472 1.0988 36 1 3.5061 -2.6515 -0.0128 37 1 5.0461 -1.7631 -0.1109 38 1 4.0135 1.0108 -0.6002 39 1 5.2684 0.2104 -1.5765 40 1 3.8344 0.9072 -2.3681 41 1 2.1931 -2.8057 -2.9371 42 1 2.3550 -1.3259 -3.9130 43 1 1.0968 -1.6163 -6.1170 44 1 -1.0035 -1.8678 -7.7832 45 1 -2.4753 -2.6182 -7.1209 46 1 -0.5063 -4.6225 -7.4067 47 1 -0.1138 -6.1208 -8.2457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603169101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:11 Heat of formation + Delta-G solvation = 93.942874 kcal Electronic energy + Delta-G solvation = -27444.321033 eV Core-core repulsion = 23665.604432 eV Total energy + Delta-G solvation = -3778.716601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.97656 -41.11009 -38.20314 -35.39466 -34.62401 -33.60271 -33.36489 -31.87395 -30.02033 -29.63417 -28.27082 -27.00969 -25.45344 -24.17342 -23.07883 -22.82408 -21.82302 -21.32676 -20.61303 -18.96189 -17.67270 -17.37868 -17.06385 -16.48582 -15.97650 -15.64624 -15.46512 -14.88214 -14.62674 -14.55556 -14.20469 -14.03333 -13.90913 -13.64668 -13.31506 -13.27944 -12.99639 -12.86903 -12.61452 -12.36532 -12.27133 -12.17038 -12.00686 -11.52242 -11.41052 -11.16705 -11.13059 -10.99759 -10.68040 -10.60395 -10.42749 -10.08188 -9.92904 -9.35799 -9.20944 -9.04441 -8.83477 -8.76893 -6.94077 -6.03734 -3.02902 1.74763 2.07199 2.20006 2.62798 2.95845 3.56808 3.61523 3.77027 3.78451 4.02088 4.18807 4.28823 4.31874 4.40535 4.53509 4.57982 4.68164 4.73217 4.78009 4.85287 4.92432 5.00256 5.10089 5.26985 5.28262 5.33851 5.35727 5.40155 5.49822 5.50272 5.53628 5.60617 5.69560 5.75844 5.82603 5.93249 5.98130 6.01286 6.33557 6.40992 6.66861 6.68686 6.78224 6.90520 7.72883 7.86476 8.82771 8.88157 9.28997 10.15765 10.31629 11.45041 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.002334 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.538679 B =11994.180281 C =12405.009206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.148 3.852 3 H 0.072 0.928 4 C -0.132 4.132 5 C -0.121 4.121 6 C -0.131 4.131 7 C 0.129 3.871 8 H 0.091 0.909 9 C -0.166 4.166 10 N -0.604 5.604 11 C 0.506 3.494 12 O -0.495 6.495 13 C 0.099 3.901 14 N -0.291 5.291 15 C -0.046 4.046 16 C -0.006 4.006 17 C 0.239 3.761 18 N -0.737 5.737 19 C -0.330 4.330 20 H 0.067 0.933 21 C -0.046 4.046 22 N -0.944 5.944 23 Si 1.083 2.917 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.295 1.295 27 N -0.254 5.254 28 N -0.069 5.069 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.189 0.811 44 H 0.038 0.962 45 H 0.040 0.960 46 H 0.368 0.632 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.315 16.588 22.833 32.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.045 3.955 3 H 0.090 0.910 4 C -0.171 4.171 5 C -0.159 4.159 6 C -0.169 4.169 7 C 0.025 3.975 8 H 0.109 0.891 9 C -0.224 4.224 10 N -0.340 5.340 11 C 0.291 3.709 12 O -0.368 6.368 13 C -0.028 4.028 14 N -0.086 5.086 15 C -0.195 4.195 16 C -0.143 4.143 17 C 0.110 3.890 18 N -0.383 5.383 19 C -0.461 4.461 20 H 0.085 0.915 21 C -0.244 4.244 22 N -0.590 5.590 23 Si 0.913 3.087 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.223 1.223 27 N -0.122 5.122 28 N -0.049 5.049 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.206 0.794 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.201 0.799 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.824 15.179 22.712 30.616 hybrid contribution 1.065 1.491 0.649 1.944 sum 14.889 16.670 23.361 32.331 Atomic orbital electron populations 1.22212 0.92307 1.04308 1.01036 1.21369 0.95892 0.94922 0.83294 0.90977 1.22105 0.95856 1.01677 0.97430 1.21557 0.95790 1.00653 0.97893 1.21943 1.01463 0.99416 0.94114 1.21405 0.79573 0.97295 0.99218 0.89073 1.22191 1.00566 0.96800 1.02811 1.48183 1.06675 1.58679 1.20433 1.20290 0.86617 0.80571 0.83374 1.90895 1.16375 1.54312 1.75225 1.21842 0.86640 1.01416 0.92854 1.46663 1.16302 1.38468 1.07123 1.23348 1.02189 1.09164 0.84838 1.22457 0.93830 1.00729 0.97330 1.18866 0.96856 0.90587 0.82689 1.42314 1.63743 1.16620 1.15639 1.20041 1.30392 1.04139 0.91493 0.91494 1.25809 0.99896 0.92710 1.05943 1.70862 1.37468 1.36377 1.14285 0.83214 0.75345 0.75859 0.74267 1.21101 1.22206 1.22265 1.75125 1.21839 1.18463 0.96807 1.78332 0.92674 1.11828 1.22020 0.91163 0.93558 0.90569 0.91203 0.90654 0.91451 0.91433 0.91094 0.90314 0.91638 0.90941 0.92037 0.85939 0.85138 0.79439 0.94405 0.94220 0.79867 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 7.62 37.16 0.28 -1.14 16 2 C 0.15 1.09 3.10 -67.38 -0.21 0.88 16 3 H 0.07 0.47 7.48 -51.93 -0.39 0.08 16 4 C -0.13 -0.76 5.40 -26.38 -0.14 -0.90 16 5 C -0.12 -0.51 5.68 -26.68 -0.15 -0.66 16 6 C -0.13 -0.53 5.56 -26.61 -0.15 -0.67 16 7 C 0.13 0.58 3.12 -67.59 -0.21 0.37 16 8 H 0.09 0.29 5.92 -51.93 -0.31 -0.02 16 9 C -0.17 -0.59 9.03 37.16 0.34 -0.25 16 10 N -0.60 -4.53 2.67 -157.48 -0.42 -4.96 16 11 C 0.51 5.46 7.48 -10.99 -0.08 5.38 16 12 O -0.49 -7.53 11.36 5.55 0.06 -7.46 16 13 C 0.10 0.92 5.30 -5.19 -0.03 0.90 16 14 N -0.29 -4.45 3.16 -62.44 -0.20 -4.65 16 15 C -0.05 -0.74 11.50 -17.04 -0.20 -0.93 16 16 C -0.01 -0.13 6.62 -82.77 -0.55 -0.68 16 17 C 0.24 5.35 6.82 -5.19 -0.04 5.32 16 18 N -0.74 -19.92 5.59 -61.09 -0.34 -20.26 16 19 C -0.33 -9.68 9.99 -15.06 -0.15 -9.83 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.05 -1.39 5.50 -17.43 -0.10 -1.48 16 22 N -0.94 -30.29 13.70 55.49 0.76 -29.53 16 23 Si 1.08 26.55 29.92 -169.99 -5.09 21.46 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 27 N -0.25 -5.62 12.41 33.29 0.41 -5.21 16 28 N -0.07 -1.35 12.24 60.35 0.74 -0.61 16 29 H 0.07 0.89 6.83 -51.93 -0.35 0.53 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.93 6.67 -51.93 -0.35 0.59 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.24 6.50 -51.93 -0.34 -0.09 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.06 0.25 5.73 -51.93 -0.30 -0.05 16 39 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.12 0.88 7.67 -51.93 -0.40 0.48 16 42 H 0.13 0.71 7.89 -51.93 -0.41 0.30 16 43 H 0.19 2.26 8.06 -52.49 -0.42 1.84 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.37 10.39 6.49 -40.82 -0.26 10.12 16 47 H 0.25 8.15 6.77 -40.82 -0.28 7.87 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -38.76 370.34 -7.11 -45.87 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.24 Total: 3.47 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.38 Total: -3.70 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: 0.95 Total: -65.22 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.06 Total: -7.46 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -5.09 Total: 21.46 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.76 -7.11 -45.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603169101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.812 kcal (2) G-P(sol) polarization free energy of solvation -38.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds