Wall clock time and date at job start Fri Apr 10 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70500 * 2 1 4 4 C 1.53626 * 109.66714 * 120.59145 * 2 1 3 5 5 C 1.53043 * 109.24378 * 174.54911 * 4 2 1 6 6 C 1.53047 * 109.53536 * 298.51105 * 5 4 2 7 7 C 1.53190 * 109.31573 * 61.36456 * 6 5 4 8 8 H 1.08991 * 109.58813 * 185.57918 * 7 6 5 9 9 C 1.53008 * 109.69980 * 65.21932 * 7 6 5 10 10 N 1.46924 * 109.58631 * 239.64182 * 2 1 3 11 11 C 1.34774 * 120.63053 * 6.62752 * 10 2 1 12 12 O 1.21287 * 120.00088 * 5.30144 * 11 10 2 13 13 C 1.50699 * 120.00297 * 185.30119 * 11 10 2 14 14 N 1.46504 * 109.47437 * 174.58706 * 13 11 10 15 15 C 1.35312 * 125.86750 * 124.99722 * 14 13 11 16 16 C 1.35360 * 106.17337 * 180.02562 * 15 14 13 17 17 C 1.50697 * 126.75186 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.46872 * 94.99582 * 17 16 15 19 19 C 1.36938 * 119.99673 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00083 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99933 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00114 * 359.73131 * 21 19 18 23 23 Si 1.86798 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47186 * 179.72607 * 23 21 19 25 25 H 1.48495 * 109.47056 * 299.72914 * 23 21 19 26 26 H 1.48506 * 109.47113 * 59.72894 * 23 21 19 27 27 N 1.33774 * 106.49205 * 0.26068 * 16 15 14 28 28 N 1.28635 * 108.88729 * 359.56797 * 27 16 15 29 29 H 1.08999 * 109.47103 * 172.95876 * 1 2 3 30 30 H 1.09001 * 109.46995 * 292.95339 * 1 2 3 31 31 H 1.08992 * 109.47324 * 52.95065 * 1 2 3 32 32 H 1.09001 * 109.63232 * 54.55538 * 4 2 1 33 33 H 1.09001 * 109.42949 * 294.41710 * 4 2 1 34 34 H 1.08999 * 109.46085 * 178.49325 * 5 4 2 35 35 H 1.08999 * 109.45058 * 58.52297 * 5 4 2 36 36 H 1.09000 * 109.49545 * 301.41236 * 6 5 4 37 37 H 1.08997 * 109.49398 * 181.31776 * 6 5 4 38 38 H 1.09000 * 109.47390 * 300.64090 * 9 7 6 39 39 H 1.08998 * 109.46605 * 60.64542 * 9 7 6 40 40 H 1.08997 * 109.46587 * 180.64210 * 9 7 6 41 41 H 1.09001 * 109.47554 * 54.58928 * 13 11 10 42 42 H 1.09005 * 109.47311 * 294.58915 * 13 11 10 43 43 H 1.07992 * 126.91642 * 0.06271 * 15 14 13 44 44 H 1.09004 * 109.46956 * 335.00213 * 17 16 15 45 45 H 1.08993 * 109.47155 * 214.99806 * 17 16 15 46 46 H 0.97000 * 120.00401 * 0.02562 * 18 17 16 47 47 H 0.97002 * 119.99835 * 0.27156 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2453 5 6 3.5712 -0.8497 1.1676 6 6 3.9615 -1.6628 -0.0689 7 6 3.4656 -0.9421 -1.3265 8 1 3.6531 -1.5638 -2.2018 9 6 4.1982 0.3926 -1.4788 10 7 2.0225 -0.6996 -1.1944 11 6 1.1674 -1.1062 -2.1535 12 8 -0.0072 -0.8122 -2.0831 13 6 1.6706 -1.9262 -3.3134 14 7 0.5378 -2.3483 -4.1411 15 6 0.4012 -2.1288 -5.4693 16 6 -0.7827 -2.6818 -5.8229 17 6 -1.3917 -2.7036 -7.2012 18 7 -1.0490 -3.9630 -7.8665 19 6 -1.4958 -4.2096 -9.1373 20 1 -2.1004 -3.4755 -9.6491 21 6 -1.1715 -5.4031 -9.7676 22 7 -0.4302 -6.2955 -9.1459 23 14 -1.7803 -5.7392 -11.5013 24 1 -1.2950 -7.0700 -11.9470 25 1 -3.2651 -5.7233 -11.5163 26 1 -1.2647 -4.6915 -12.4188 27 7 -1.3079 -3.2004 -4.7073 28 7 -0.4986 -2.9910 -3.7296 29 1 -0.3633 -1.0199 -0.1260 30 1 -0.3633 0.4008 0.9463 31 1 -0.3633 0.6191 -0.8201 32 1 1.6096 -1.7337 1.2890 33 1 1.7689 -0.1770 2.1387 34 1 3.9444 -1.3479 2.0624 35 1 4.0064 0.1472 1.0988 36 1 3.5061 -2.6515 -0.0128 37 1 5.0461 -1.7631 -0.1109 38 1 4.0135 1.0108 -0.6002 39 1 5.2684 0.2104 -1.5765 40 1 3.8344 0.9072 -2.3681 41 1 2.1931 -2.8057 -2.9371 42 1 2.3550 -1.3259 -3.9130 43 1 1.0968 -1.6163 -6.1170 44 1 -1.0035 -1.8678 -7.7832 45 1 -2.4753 -2.6182 -7.1209 46 1 -0.5063 -4.6225 -7.4067 47 1 -0.1138 -6.1208 -8.2457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603169101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:11 Heat of formation + Delta-G solvation = 65.998865 kcal Electronic energy + Delta-G solvation = -27445.532776 eV Core-core repulsion = 23665.604432 eV Total energy + Delta-G solvation = -3779.928344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.32622 -41.79558 -38.88393 -37.18298 -35.85373 -34.43887 -33.94011 -33.68778 -31.50160 -30.58265 -29.14098 -27.48066 -27.32709 -24.94559 -24.75260 -23.83709 -22.79364 -22.45787 -21.56884 -19.74971 -19.40400 -18.58679 -18.01356 -17.38606 -16.90052 -16.69936 -16.51094 -15.93266 -15.80429 -15.74581 -15.25081 -15.03954 -14.86095 -14.75681 -14.48704 -14.31056 -13.95128 -13.80449 -13.68506 -13.33626 -12.95767 -12.78205 -12.75096 -12.65283 -12.54526 -12.52506 -12.07289 -11.90301 -11.86111 -11.83415 -11.59447 -11.42118 -11.35083 -11.25928 -10.94888 -10.26790 -10.24158 -9.67080 -9.13990 -8.40095 -5.34087 0.51876 1.14340 1.37035 1.42658 1.61661 1.72670 1.86579 1.88676 2.75217 3.06779 3.31429 3.41566 3.62369 3.66535 3.80330 3.83951 3.90720 3.92258 3.98084 3.98661 4.15396 4.16547 4.26382 4.37277 4.46039 4.48082 4.63566 4.64916 4.75418 4.78003 4.92544 4.99611 5.03543 5.05064 5.06457 5.07550 5.13304 5.20192 5.27180 5.29392 5.51147 5.53467 5.58469 5.62525 6.24372 6.47847 6.97951 7.05811 7.45927 7.95588 8.09783 9.11690 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.002334 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.538679 B =11994.180281 C =12405.009206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.146 3.854 3 H 0.088 0.912 4 C -0.128 4.128 5 C -0.119 4.119 6 C -0.130 4.130 7 C 0.121 3.879 8 H 0.111 0.889 9 C -0.162 4.162 10 N -0.594 5.594 11 C 0.500 3.500 12 O -0.551 6.551 13 C 0.087 3.913 14 N -0.276 5.276 15 C -0.016 4.016 16 C -0.043 4.043 17 C 0.243 3.757 18 N -0.749 5.749 19 C -0.334 4.334 20 H 0.074 0.926 21 C -0.106 4.106 22 N -0.975 5.975 23 Si 1.133 2.867 24 H -0.293 1.293 25 H -0.280 1.280 26 H -0.270 1.270 27 N -0.304 5.304 28 N -0.094 5.094 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.151 0.849 42 H 0.181 0.819 43 H 0.236 0.764 44 H 0.063 0.937 45 H 0.023 0.977 46 H 0.358 0.642 47 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.370 18.254 22.710 34.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.044 3.956 3 H 0.106 0.894 4 C -0.166 4.166 5 C -0.156 4.156 6 C -0.168 4.168 7 C 0.019 3.981 8 H 0.129 0.871 9 C -0.220 4.220 10 N -0.328 5.328 11 C 0.287 3.713 12 O -0.429 6.429 13 C -0.036 4.036 14 N -0.070 5.070 15 C -0.167 4.167 16 C -0.182 4.182 17 C 0.116 3.884 18 N -0.394 5.394 19 C -0.465 4.465 20 H 0.092 0.908 21 C -0.297 4.297 22 N -0.623 5.623 23 Si 0.957 3.043 24 H -0.220 1.220 25 H -0.206 1.206 26 H -0.196 1.196 27 N -0.171 5.171 28 N -0.073 5.073 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.168 0.832 42 H 0.198 0.802 43 H 0.252 0.748 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.189 0.811 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 16.922 16.897 22.665 32.948 hybrid contribution 0.190 1.089 0.852 1.396 sum 17.112 17.986 23.517 34.196 Atomic orbital electron populations 1.22029 0.94686 1.01671 1.00549 1.21418 0.93926 0.96108 0.84145 0.89435 1.22063 0.97270 1.00458 0.96827 1.21563 0.94103 1.01533 0.98431 1.21962 1.02683 0.98580 0.93604 1.21759 0.77365 0.98540 1.00432 0.87113 1.22176 1.01488 0.95806 1.02519 1.48286 1.07857 1.57272 1.19367 1.20576 0.86211 0.80448 0.84114 1.90902 1.18683 1.56654 1.76611 1.22493 0.85205 1.03176 0.92764 1.47027 1.16208 1.36272 1.07531 1.23875 1.00868 1.06651 0.85336 1.22297 0.96048 1.03562 0.96243 1.18844 0.96129 0.89246 0.84210 1.42518 1.63576 1.18020 1.15275 1.20451 1.29501 1.04180 0.92386 0.90761 1.27376 0.99901 0.92795 1.09622 1.70988 1.39689 1.37611 1.14016 0.82577 0.75633 0.75882 0.70210 1.21957 1.20642 1.19553 1.75041 1.23873 1.20313 0.97897 1.78220 0.93998 1.13369 1.21719 0.94416 0.92248 0.93187 0.93059 0.89649 0.90767 0.90204 0.92274 0.88128 0.91842 0.89015 0.92491 0.83174 0.80161 0.74804 0.91920 0.95948 0.81051 0.94906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 7.62 71.98 0.55 -2.26 16 2 C 0.15 2.03 3.10 45.12 0.14 2.17 16 3 H 0.09 0.99 7.48 -2.39 -0.02 0.97 16 4 C -0.13 -1.31 5.40 30.82 0.17 -1.14 16 5 C -0.12 -0.66 5.68 30.62 0.17 -0.49 16 6 C -0.13 -0.63 5.56 30.67 0.17 -0.46 16 7 C 0.12 0.67 3.12 44.98 0.14 0.81 16 8 H 0.11 0.19 5.92 -2.39 -0.01 0.17 16 9 C -0.16 -0.52 9.03 71.98 0.65 0.13 16 10 N -0.59 -7.90 2.67 -770.53 -2.06 -9.96 16 11 C 0.50 10.30 7.48 87.66 0.66 10.96 16 12 O -0.55 -17.35 11.36 -3.05 -0.03 -17.39 16 13 C 0.09 1.38 5.30 85.63 0.45 1.83 16 14 N -0.28 -8.05 3.16 -351.45 -1.11 -9.17 16 15 C -0.02 -0.49 11.50 83.49 0.96 0.47 16 16 C -0.04 -1.78 6.62 41.60 0.28 -1.50 16 17 C 0.24 10.97 6.82 85.63 0.58 11.56 16 18 N -0.75 -40.97 5.59 -347.18 -1.94 -42.91 16 19 C -0.33 -19.62 9.99 84.03 0.84 -18.78 16 20 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.11 -6.39 5.50 84.86 0.47 -5.93 16 22 N -0.97 -63.47 13.70 21.65 0.30 -63.18 16 23 Si 1.13 53.03 29.92 68.60 2.05 55.08 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 N -0.30 -13.91 12.41 -48.60 -0.60 -14.51 16 28 N -0.09 -3.74 12.24 37.02 0.45 -3.28 16 29 H 0.04 1.04 6.83 -2.39 -0.02 1.02 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.32 6.67 -2.39 -0.02 1.30 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.08 0.29 6.50 -2.39 -0.02 0.27 16 36 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.06 0.25 5.73 -2.39 -0.01 0.24 16 39 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.15 1.62 7.67 -2.39 -0.02 1.60 16 42 H 0.18 1.03 7.89 -2.38 -0.02 1.01 16 43 H 0.24 4.57 8.06 -2.91 -0.02 4.55 16 44 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.36 20.74 6.49 -92.71 -0.60 20.13 16 47 H 0.24 15.84 6.77 -92.71 -0.63 15.21 16 Total: -1.00 -89.75 370.34 3.79 -85.95 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.52 Total: 21.99 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 6.22 Total: -2.63 kcal Atomic # 7 Polarization: -138.04 SS G_CDS: -4.97 Total: -143.01 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.03 Total: -17.39 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 2.05 Total: 55.08 kcal Total: -89.75 3.79 -85.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603169101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.953 kcal (2) G-P(sol) polarization free energy of solvation -89.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds