Wall clock time and date at job start Fri Apr 10 2020 18:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46726 * 2 1 4 4 C 1.53001 * 109.47187 * 240.00174 * 2 1 3 5 5 C 1.53001 * 109.47187 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47141 * 59.99816 * 5 4 2 7 7 C 1.53001 * 109.47230 * 300.00158 * 6 5 4 8 8 C 1.53001 * 109.47187 * 59.99870 * 7 6 5 9 9 H 1.09000 * 109.47311 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.47063 * 60.00347 * 8 7 6 11 11 C 1.34768 * 120.00262 * 85.00277 * 10 8 7 12 12 O 1.21277 * 119.99825 * 359.97438 * 11 10 8 13 13 C 1.50698 * 120.00119 * 180.02562 * 11 10 8 14 14 N 1.46494 * 109.47318 * 179.97438 * 13 11 10 15 15 C 1.35317 * 125.87155 * 125.32189 * 14 13 11 16 16 C 1.35352 * 106.17693 * 180.11507 * 15 14 13 17 17 C 1.50700 * 126.75361 * 179.84844 * 16 15 14 18 18 N 1.46498 * 109.46769 * 94.71485 * 17 16 15 19 19 C 1.36943 * 119.99752 * 179.72432 * 18 17 16 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 N 1.33772 * 106.49634 * 359.59642 * 16 15 14 28 28 N 1.28636 * 108.88627 * 0.25926 * 27 16 15 29 29 H 1.08999 * 109.47440 * 299.99580 * 1 2 3 30 30 H 1.08996 * 109.47055 * 60.00127 * 1 2 3 31 31 H 1.09002 * 109.47090 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47368 * 59.99891 * 4 2 1 33 33 H 1.09008 * 109.47010 * 299.99418 * 4 2 1 34 34 H 1.09002 * 109.47090 * 300.00184 * 5 4 2 35 35 H 1.09000 * 109.47311 * 179.97438 * 5 4 2 36 36 H 1.08993 * 109.47083 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.46948 * 59.99675 * 6 5 4 38 38 H 1.08999 * 109.47146 * 300.00301 * 7 6 5 39 39 H 1.08996 * 109.47368 * 179.97438 * 7 6 5 40 40 H 0.97007 * 119.99430 * 264.99935 * 10 8 7 41 41 H 1.08998 * 109.47696 * 59.99537 * 13 11 10 42 42 H 1.09000 * 109.46826 * 299.99172 * 13 11 10 43 43 H 1.08002 * 126.91295 * 359.96910 * 15 14 13 44 44 H 1.09004 * 109.47210 * 334.71843 * 17 16 15 45 45 H 1.08994 * 109.47121 * 214.71813 * 17 16 15 46 46 H 0.97001 * 120.00384 * 0.02562 * 18 17 16 47 47 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7222 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6761 -0.2074 2.1390 10 7 1.5507 -2.1027 1.2490 11 6 1.4214 -2.7720 2.4115 12 8 1.7102 -2.2312 3.4579 13 6 0.9191 -4.1928 2.4112 14 7 0.8697 -4.6937 3.7869 15 6 -0.2139 -5.2251 4.3989 16 6 0.1822 -5.5502 5.6517 17 6 -0.6641 -6.1734 6.7317 18 7 -0.4872 -7.6276 6.7124 19 6 -1.1572 -8.4108 7.6141 20 1 -1.8194 -7.9568 8.3365 21 6 -0.9852 -9.7881 7.5996 22 7 -0.1777 -10.3412 6.7195 23 14 -1.8996 -10.8565 8.8291 24 1 -2.7384 -9.9980 9.7034 25 1 -2.7667 -11.8176 8.1012 26 1 -0.9212 -11.6035 9.6597 27 7 1.4740 -5.2145 5.7408 28 7 1.8514 -4.7097 4.6194 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -0.2074 -2.1392 33 1 1.6768 -1.7490 -1.2492 34 1 3.9338 0.3058 -1.2486 35 1 3.9334 -1.2360 -2.1387 36 1 5.1695 -1.4434 0.0008 37 1 3.7158 -2.4709 0.0001 38 1 3.9331 0.3054 1.2498 39 1 3.9321 -1.2365 2.1395 40 1 1.3200 -2.5353 0.4119 41 1 1.5919 -4.8160 1.8220 42 1 -0.0800 -4.2248 1.9765 43 1 -1.1976 -5.3603 3.9740 44 1 -1.7126 -5.9326 6.5562 45 1 -0.3593 -5.7831 7.7027 46 1 0.1078 -8.0353 6.0639 47 1 -0.0578 -11.3037 6.7092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603173184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:25 Heat of formation + Delta-G solvation = 36.182351 kcal Electronic energy + Delta-G solvation = -26836.314396 eV Core-core repulsion = 23055.093111 eV Total energy + Delta-G solvation = -3781.221285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.21348 -41.43811 -39.33514 -36.86689 -35.44717 -34.82316 -33.63244 -33.47239 -31.59281 -31.31350 -29.38481 -27.56475 -27.08134 -24.77585 -24.04115 -23.16131 -22.55471 -22.32176 -21.51114 -20.09437 -19.37311 -18.70018 -18.27010 -17.23056 -16.65096 -16.56049 -16.44215 -16.04523 -15.84939 -15.53096 -15.36346 -15.13807 -14.95330 -14.71081 -14.34377 -14.26118 -13.85912 -13.73607 -13.40764 -13.17068 -13.02021 -12.88512 -12.79422 -12.63547 -12.46489 -12.42826 -12.02710 -11.87449 -11.82781 -11.80810 -11.50682 -11.41801 -11.27453 -10.96718 -10.94688 -10.77415 -10.15920 -10.10781 -9.00801 -7.92218 -5.22596 0.62546 1.27938 1.43738 1.48956 1.52261 1.55275 1.63214 2.11905 2.60582 3.32706 3.40970 3.56707 3.67377 3.74502 3.80132 3.81867 4.02439 4.03884 4.15897 4.20780 4.22268 4.28471 4.46891 4.51059 4.52850 4.59045 4.65091 4.69158 4.83736 4.87403 4.96257 5.04439 5.12181 5.16785 5.17412 5.19537 5.27635 5.30165 5.37916 5.41363 5.48050 5.52345 5.56475 5.63750 6.27740 6.42158 7.12698 7.34398 7.56522 8.05401 8.32245 9.32016 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.033481 B = 0.002061 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.098867 B =13580.049887 C =13693.469029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 H 0.088 0.912 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.131 4.131 8 C 0.155 3.845 9 H 0.061 0.939 10 N -0.696 5.696 11 C 0.502 3.498 12 O -0.566 6.566 13 C 0.088 3.912 14 N -0.279 5.279 15 C -0.017 4.017 16 C -0.042 4.042 17 C 0.237 3.763 18 N -0.738 5.738 19 C -0.242 4.242 20 H 0.084 0.916 21 C -0.079 4.079 22 N -0.973 5.973 23 Si 0.980 3.020 24 H -0.262 1.262 25 H -0.290 1.290 26 H -0.298 1.298 27 N -0.306 5.306 28 N -0.095 5.095 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.418 0.582 41 H 0.156 0.844 42 H 0.188 0.812 43 H 0.237 0.763 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.371 0.629 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 23.827 -26.483 35.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.106 0.894 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.170 4.170 8 C 0.050 3.950 9 H 0.079 0.921 10 N -0.351 5.351 11 C 0.287 3.713 12 O -0.443 6.443 13 C -0.035 4.035 14 N -0.073 5.073 15 C -0.168 4.168 16 C -0.180 4.180 17 C 0.109 3.891 18 N -0.381 5.381 19 C -0.373 4.373 20 H 0.102 0.898 21 C -0.271 4.271 22 N -0.624 5.624 23 Si 0.809 3.191 24 H -0.186 1.186 25 H -0.217 1.217 26 H -0.225 1.225 27 N -0.173 5.173 28 N -0.075 5.075 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.257 0.743 41 H 0.174 0.826 42 H 0.205 0.795 43 H 0.254 0.746 44 H 0.083 0.917 45 H 0.042 0.958 46 H 0.202 0.798 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.325 24.596 -25.408 35.439 hybrid contribution -0.801 -1.245 0.310 1.513 sum 1.525 23.351 -25.098 34.315 Atomic orbital electron populations 1.21833 0.94128 1.02579 1.01959 1.21380 0.96346 0.99997 0.93176 0.89406 1.21617 0.95122 1.01118 0.97116 1.21544 0.95891 1.00875 0.97187 1.21484 1.00242 0.99513 0.94101 1.21895 0.95358 1.01552 0.98189 1.20940 0.93383 0.81526 0.99129 0.92112 1.45772 1.66431 1.14589 1.08294 1.20656 0.78066 0.88230 0.84378 1.90848 1.50401 1.69681 1.33368 1.22414 1.10318 0.93218 0.77590 1.47019 1.07458 1.39792 1.13046 1.23900 0.96125 1.03355 0.93436 1.22337 0.92461 1.05694 0.97495 1.18949 0.95085 0.82853 0.92199 1.42525 1.54338 1.00980 1.40239 1.19745 1.18925 0.89092 1.09585 0.89810 1.25660 1.01620 0.98186 1.01662 1.69868 1.42642 1.10078 1.39786 0.84972 0.77476 0.78541 0.78133 1.18629 1.21656 1.22507 1.75040 1.13155 1.13911 1.15218 1.78239 1.15012 1.18570 0.95628 0.93837 0.91168 0.91817 0.90152 0.90929 0.91788 0.90947 0.92397 0.91892 0.90514 0.94590 0.74288 0.82637 0.79479 0.74633 0.91694 0.95831 0.79764 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.03 71.98 0.65 -0.26 16 2 C -0.09 -0.60 2.52 -10.79 -0.03 -0.62 16 3 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 4 C -0.11 -0.41 5.03 30.59 0.15 -0.26 16 5 C -0.12 -0.69 5.92 30.60 0.18 -0.51 16 6 C -0.12 -1.18 5.77 30.60 0.18 -1.01 16 7 C -0.13 -1.89 5.60 30.59 0.17 -1.72 16 8 C 0.15 1.96 2.23 44.99 0.10 2.06 16 9 H 0.06 1.15 7.58 -2.39 -0.02 1.13 16 10 N -0.70 -7.34 3.54 -442.54 -1.57 -8.90 16 11 C 0.50 9.49 7.81 87.66 0.68 10.17 16 12 O -0.57 -18.15 15.34 -3.02 -0.05 -18.20 16 13 C 0.09 1.23 6.94 85.63 0.59 1.82 16 14 N -0.28 -7.96 3.20 -351.48 -1.12 -9.08 16 15 C -0.02 -0.51 11.50 83.49 0.96 0.45 16 16 C -0.04 -1.70 6.61 41.60 0.28 -1.42 16 17 C 0.24 10.44 6.82 85.63 0.58 11.03 16 18 N -0.74 -40.01 5.59 -347.18 -1.94 -41.95 16 19 C -0.24 -13.92 9.99 84.03 0.84 -13.08 16 20 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 21 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 22 N -0.97 -61.66 13.06 21.65 0.28 -61.37 16 23 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 26 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 27 N -0.31 -14.01 12.41 -48.60 -0.60 -14.61 16 28 N -0.10 -3.80 12.13 37.02 0.45 -3.35 16 29 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.06 0.30 7.44 -2.39 -0.02 0.28 16 32 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.07 0.11 6.50 -2.38 -0.02 0.09 16 34 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.63 7.60 -2.39 -0.02 0.61 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.42 1.31 6.65 -92.70 -0.62 0.69 16 41 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.19 0.53 8.07 -2.39 -0.02 0.51 16 43 H 0.24 4.38 8.06 -2.91 -0.02 4.36 16 44 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 45 H 0.02 1.10 8.14 -2.39 -0.02 1.09 16 46 H 0.37 21.89 7.66 -92.71 -0.71 21.18 16 47 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -89.40 380.82 2.94 -86.45 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -0.34 Total: 19.49 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 5.81 Total: 2.43 kcal Atomic # 7 Polarization: -134.77 SS G_CDS: -4.50 Total: -139.28 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.05 Total: -18.20 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -89.40 2.94 -86.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603173184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.635 kcal (2) G-P(sol) polarization free energy of solvation -89.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds