Wall clock time and date at job start Fri Apr 10 2020 18:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47684 * 2 1 4 4 C 1.50703 * 109.47289 * 120.00356 * 2 1 3 5 5 O 1.21285 * 119.99890 * 23.33524 * 4 2 1 6 6 N 1.34768 * 120.00468 * 203.34609 * 4 2 1 7 7 C 1.46930 * 120.62730 * 4.72603 * 6 4 2 8 8 C 1.52768 * 109.00705 * 233.58961 * 7 6 4 9 9 C 1.53038 * 109.38128 * 305.58596 * 8 7 6 10 10 C 1.52997 * 109.44817 * 181.25865 * 9 8 7 11 11 C 1.53036 * 109.53822 * 61.24223 * 9 8 7 12 12 C 1.46924 * 120.63747 * 185.00998 * 6 4 2 13 13 N 1.46507 * 109.46642 * 239.99696 * 2 1 3 14 14 C 1.35307 * 125.87315 * 324.99846 * 13 2 1 15 15 C 1.35342 * 106.17807 * 179.97438 * 14 13 2 16 16 C 1.50702 * 126.75512 * 179.97438 * 15 14 13 17 17 N 1.46503 * 109.47584 * 94.99732 * 16 15 14 18 18 C 1.36933 * 120.00295 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99749 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99996 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00422 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00093 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46814 * 60.00054 * 22 20 18 24 24 H 1.48495 * 109.47202 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47018 * 300.00354 * 22 20 18 26 26 N 1.33774 * 106.49765 * 0.02562 * 15 14 13 27 27 N 1.28629 * 108.88232 * 0.02562 * 26 15 14 28 28 H 1.09003 * 109.46947 * 303.83531 * 1 2 3 29 29 H 1.09003 * 109.47000 * 63.83331 * 1 2 3 30 30 H 1.08994 * 109.47518 * 183.83991 * 1 2 3 31 31 H 1.08998 * 109.58950 * 353.41835 * 7 6 4 32 32 H 1.09003 * 109.58876 * 113.84863 * 7 6 4 33 33 H 1.09006 * 109.56127 * 185.55502 * 8 7 6 34 34 H 1.08990 * 109.36145 * 65.49853 * 8 7 6 35 35 H 1.09005 * 109.45955 * 301.22194 * 9 8 7 36 36 H 1.09003 * 109.47041 * 299.93839 * 10 9 8 37 37 H 1.09003 * 109.47576 * 59.93762 * 10 9 8 38 38 H 1.09005 * 109.47214 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.49816 * 178.68222 * 11 9 8 40 40 H 1.08997 * 109.52319 * 58.60342 * 11 9 8 41 41 H 1.08995 * 109.58670 * 246.15561 * 12 6 4 42 42 H 1.09009 * 109.58350 * 6.43426 * 12 6 4 43 43 H 1.08008 * 126.91019 * 0.25246 * 14 13 2 44 44 H 1.09000 * 109.47649 * 215.00052 * 16 15 14 45 45 H 1.09000 * 109.46615 * 335.00128 * 16 15 14 46 46 H 0.96999 * 119.99388 * 0.02562 * 17 16 15 47 47 H 0.97000 * 120.00713 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.3252 -1.5175 1.7959 6 7 3.2673 -0.4491 1.7026 7 6 4.0959 0.5992 1.0916 8 6 5.4498 0.0036 0.7095 9 6 6.0782 -0.6587 1.9378 10 6 7.4482 -1.2283 1.5645 11 6 5.1722 -1.7900 2.4290 12 6 3.8130 -1.2110 2.8341 13 7 2.0182 -0.6907 -1.1962 14 6 1.4357 -1.7588 -1.7883 15 6 2.2123 -2.0704 -2.8521 16 6 1.9878 -3.1901 -3.8354 17 7 1.2696 -2.6768 -5.0046 18 6 0.9517 -3.5185 -6.0368 19 1 1.2307 -4.5607 -5.9892 20 6 0.2717 -3.0319 -7.1448 21 7 -0.0680 -1.7616 -7.2031 22 14 -0.1614 -4.1800 -8.5533 23 1 -1.0309 -5.2740 -8.0507 24 1 -0.8802 -3.4206 -9.6078 25 1 1.0829 -4.7579 -9.1213 26 7 3.2191 -1.1896 -2.8584 27 7 3.0756 -0.3863 -1.8640 28 1 -0.3633 0.5722 0.8537 29 1 -0.3633 0.4532 -0.9224 30 1 -0.3634 -1.0253 0.0688 31 1 3.6016 0.9817 0.1986 32 1 4.2446 1.4097 1.8050 33 1 6.1068 0.7939 0.3462 34 1 5.3088 -0.7415 -0.0734 35 1 6.1961 0.0817 2.7291 36 1 7.3305 -1.9690 0.7735 37 1 8.0937 -0.4226 1.2146 38 1 7.8963 -1.6997 2.4393 39 1 5.6315 -2.2763 3.2896 40 1 5.0338 -2.5187 1.6303 41 1 3.9381 -0.5511 3.6926 42 1 3.1307 -2.0210 3.0923 43 1 0.5303 -2.2591 -1.4775 44 1 2.9493 -3.5965 -4.1492 45 1 1.3981 -3.9757 -3.3629 46 1 1.0193 -1.7406 -5.0474 47 1 -0.5428 -1.4215 -7.9775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603182978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:42 Heat of formation + Delta-G solvation = 75.501981 kcal Electronic energy + Delta-G solvation = -27877.157729 eV Core-core repulsion = 24097.641472 eV Total energy + Delta-G solvation = -3779.516258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.10427 -40.67632 -38.24771 -35.65804 -34.59400 -34.30501 -31.96664 -31.63740 -30.54910 -29.91257 -28.75411 -26.14402 -25.29222 -23.80102 -23.56729 -22.79038 -21.95266 -20.90784 -20.52654 -19.32756 -18.07757 -17.43687 -16.93483 -16.58079 -15.52742 -15.38460 -15.01619 -14.71372 -14.66595 -14.51075 -14.23720 -13.89567 -13.75102 -13.45129 -13.38111 -13.10945 -13.02494 -12.66916 -12.58890 -12.19894 -12.19476 -12.11842 -11.74579 -11.58770 -11.35094 -11.22102 -10.95444 -10.84927 -10.77405 -10.76259 -10.61513 -10.42170 -10.09803 -9.77223 -9.63625 -9.09124 -8.86250 -8.82454 -6.89177 -5.71330 -3.00867 1.55382 1.81717 2.49874 2.77014 2.89934 3.48480 3.52466 3.53840 3.85771 4.04239 4.28044 4.39803 4.45520 4.48164 4.64458 4.68652 4.74832 4.86763 4.97409 5.07975 5.20851 5.24818 5.27834 5.31567 5.33970 5.39235 5.42292 5.49236 5.52270 5.63883 5.64898 5.66123 5.72214 5.81243 5.84136 5.88165 6.08842 6.10932 6.20041 6.40688 6.67717 6.70545 6.79026 6.86927 7.60933 7.73318 8.45942 8.79528 9.57735 10.13313 10.49602 11.51407 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.002898 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.248859 B = 9658.668683 C =10380.599072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 H 0.128 0.872 4 C 0.511 3.489 5 O -0.520 6.520 6 N -0.601 5.601 7 C 0.101 3.899 8 C -0.128 4.128 9 C -0.092 4.092 10 C -0.147 4.147 11 C -0.130 4.130 12 C 0.111 3.889 13 N -0.295 5.295 14 C -0.029 4.029 15 C -0.005 4.005 16 C 0.233 3.767 17 N -0.725 5.725 18 C -0.240 4.240 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.285 1.285 26 N -0.246 5.246 27 N -0.096 5.096 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.188 0.812 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.128 6.588 24.896 27.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.146 0.854 4 C 0.295 3.705 5 O -0.395 6.395 6 N -0.334 5.334 7 C -0.022 4.022 8 C -0.166 4.166 9 C -0.111 4.111 10 C -0.204 4.204 11 C -0.168 4.168 12 C -0.011 4.011 13 N -0.091 5.091 14 C -0.180 4.180 15 C -0.142 4.142 16 C 0.104 3.896 17 N -0.370 5.370 18 C -0.371 4.371 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 N -0.114 5.114 27 N -0.074 5.074 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.205 0.795 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.930 6.971 25.013 27.800 hybrid contribution -1.215 -0.776 -0.662 1.586 sum 8.715 6.195 24.352 26.596 Atomic orbital electron populations 1.22066 0.89297 1.05542 1.04411 1.21642 0.98081 0.97804 0.80126 0.85397 1.20488 0.81726 0.82948 0.85337 1.90732 1.55396 1.34073 1.59254 1.48134 1.14706 1.36990 1.33581 1.21865 0.92279 0.89401 0.98612 1.21865 0.95248 1.01392 0.98133 1.21133 0.95064 0.97221 0.97652 1.21816 0.95961 1.01158 1.01504 1.21993 0.94650 0.98268 1.01930 1.21661 0.95351 0.96399 0.87680 1.47028 1.18963 1.22516 1.20560 1.23372 1.03190 0.93497 0.97891 1.22436 0.93262 1.00562 0.97910 1.18947 0.96278 0.88980 0.85411 1.42287 1.67488 1.10421 1.16799 1.19187 1.29968 0.92073 0.95863 0.90954 1.24746 1.01389 0.96153 0.98573 1.69667 1.45133 1.12672 1.30635 0.86237 0.78054 0.79643 0.82055 1.21236 1.21743 1.21202 1.75072 1.21641 1.03028 1.11641 1.78198 1.04085 1.21888 1.03260 0.89366 0.89866 0.89683 0.88939 0.90936 0.90225 0.90650 0.91100 0.92464 0.92440 0.92709 0.90531 0.91378 0.91182 0.88926 0.79467 0.94338 0.94465 0.78095 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.34 37.16 0.31 -1.13 16 2 C 0.13 1.38 2.78 -69.08 -0.19 1.18 16 3 H 0.13 1.06 6.36 -51.93 -0.33 0.73 16 4 C 0.51 5.89 7.15 -10.99 -0.08 5.81 16 5 O -0.52 -7.39 15.42 5.55 0.09 -7.30 16 6 N -0.60 -5.75 2.98 -173.02 -0.52 -6.27 16 7 C 0.10 0.80 6.24 -3.93 -0.02 0.78 16 8 C -0.13 -1.08 5.34 -26.83 -0.14 -1.22 16 9 C -0.09 -0.65 2.68 -90.58 -0.24 -0.90 16 10 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 11 C -0.13 -1.00 5.36 -26.61 -0.14 -1.15 16 12 C 0.11 0.93 6.42 -3.71 -0.02 0.91 16 13 N -0.29 -4.22 3.24 -55.89 -0.18 -4.40 16 14 C -0.03 -0.47 10.63 -17.05 -0.18 -0.66 16 15 C 0.00 -0.09 6.61 -82.78 -0.55 -0.63 16 16 C 0.23 5.00 6.82 -5.19 -0.04 4.97 16 17 N -0.73 -19.17 5.59 -61.09 -0.34 -19.51 16 18 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 22 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 N -0.25 -4.87 12.41 33.29 0.41 -4.46 16 27 N -0.10 -1.58 12.37 60.35 0.75 -0.84 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.88 6.97 -51.93 -0.36 0.52 16 31 H 0.09 0.80 4.72 -51.93 -0.24 0.55 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.91 7.04 -51.92 -0.37 0.55 16 43 H 0.19 2.60 7.41 -52.48 -0.39 2.21 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.39 10.93 7.66 -40.82 -0.31 10.62 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -34.53 379.28 -7.05 -41.58 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.47 Total: 6.12 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.21 Total: -0.18 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: 0.85 Total: -63.60 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.09 Total: -7.30 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.53 -7.05 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603182978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.084 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds