Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47684 * 2 1 4 4 C 1.50703 * 109.47289 * 120.00356 * 2 1 3 5 5 O 1.21285 * 119.99890 * 23.33524 * 4 2 1 6 6 N 1.34768 * 120.00468 * 203.34609 * 4 2 1 7 7 C 1.46930 * 120.62730 * 4.72603 * 6 4 2 8 8 C 1.52768 * 109.00705 * 233.58961 * 7 6 4 9 9 C 1.53038 * 109.38128 * 305.58596 * 8 7 6 10 10 C 1.52997 * 109.44817 * 181.25865 * 9 8 7 11 11 C 1.53036 * 109.53822 * 61.24223 * 9 8 7 12 12 C 1.46924 * 120.63747 * 185.00998 * 6 4 2 13 13 N 1.46507 * 109.46642 * 239.99696 * 2 1 3 14 14 C 1.35307 * 125.87315 * 324.99846 * 13 2 1 15 15 C 1.35342 * 106.17807 * 179.97438 * 14 13 2 16 16 C 1.50702 * 126.75512 * 179.97438 * 15 14 13 17 17 N 1.46503 * 109.47584 * 94.99732 * 16 15 14 18 18 C 1.36933 * 120.00295 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99749 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99996 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00422 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00093 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46814 * 60.00054 * 22 20 18 24 24 H 1.48495 * 109.47202 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47018 * 300.00354 * 22 20 18 26 26 N 1.33774 * 106.49765 * 0.02562 * 15 14 13 27 27 N 1.28629 * 108.88232 * 0.02562 * 26 15 14 28 28 H 1.09003 * 109.46947 * 303.83531 * 1 2 3 29 29 H 1.09003 * 109.47000 * 63.83331 * 1 2 3 30 30 H 1.08994 * 109.47518 * 183.83991 * 1 2 3 31 31 H 1.08998 * 109.58950 * 353.41835 * 7 6 4 32 32 H 1.09003 * 109.58876 * 113.84863 * 7 6 4 33 33 H 1.09006 * 109.56127 * 185.55502 * 8 7 6 34 34 H 1.08990 * 109.36145 * 65.49853 * 8 7 6 35 35 H 1.09005 * 109.45955 * 301.22194 * 9 8 7 36 36 H 1.09003 * 109.47041 * 299.93839 * 10 9 8 37 37 H 1.09003 * 109.47576 * 59.93762 * 10 9 8 38 38 H 1.09005 * 109.47214 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.49816 * 178.68222 * 11 9 8 40 40 H 1.08997 * 109.52319 * 58.60342 * 11 9 8 41 41 H 1.08995 * 109.58670 * 246.15561 * 12 6 4 42 42 H 1.09009 * 109.58350 * 6.43426 * 12 6 4 43 43 H 1.08008 * 126.91019 * 0.25246 * 14 13 2 44 44 H 1.09000 * 109.47649 * 215.00052 * 16 15 14 45 45 H 1.09000 * 109.46615 * 335.00128 * 16 15 14 46 46 H 0.96999 * 119.99388 * 0.02562 * 17 16 15 47 47 H 0.97000 * 120.00713 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.3252 -1.5175 1.7959 6 7 3.2673 -0.4491 1.7026 7 6 4.0959 0.5992 1.0916 8 6 5.4498 0.0036 0.7095 9 6 6.0782 -0.6587 1.9378 10 6 7.4482 -1.2283 1.5645 11 6 5.1722 -1.7900 2.4290 12 6 3.8130 -1.2110 2.8341 13 7 2.0182 -0.6907 -1.1962 14 6 1.4357 -1.7588 -1.7883 15 6 2.2123 -2.0704 -2.8521 16 6 1.9878 -3.1901 -3.8354 17 7 1.2696 -2.6768 -5.0046 18 6 0.9517 -3.5185 -6.0368 19 1 1.2307 -4.5607 -5.9892 20 6 0.2717 -3.0319 -7.1448 21 7 -0.0680 -1.7616 -7.2031 22 14 -0.1614 -4.1800 -8.5533 23 1 -1.0309 -5.2740 -8.0507 24 1 -0.8802 -3.4206 -9.6078 25 1 1.0829 -4.7579 -9.1213 26 7 3.2191 -1.1896 -2.8584 27 7 3.0756 -0.3863 -1.8640 28 1 -0.3633 0.5722 0.8537 29 1 -0.3633 0.4532 -0.9224 30 1 -0.3634 -1.0253 0.0688 31 1 3.6016 0.9817 0.1986 32 1 4.2446 1.4097 1.8050 33 1 6.1068 0.7939 0.3462 34 1 5.3088 -0.7415 -0.0734 35 1 6.1961 0.0817 2.7291 36 1 7.3305 -1.9690 0.7735 37 1 8.0937 -0.4226 1.2146 38 1 7.8963 -1.6997 2.4393 39 1 5.6315 -2.2763 3.2896 40 1 5.0338 -2.5187 1.6303 41 1 3.9381 -0.5511 3.6926 42 1 3.1307 -2.0210 3.0923 43 1 0.5303 -2.2591 -1.4775 44 1 2.9493 -3.5965 -4.1492 45 1 1.3981 -3.9757 -3.3629 46 1 1.0193 -1.7406 -5.0474 47 1 -0.5428 -1.4215 -7.9775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603182978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = 52.133880 kcal Electronic energy + Delta-G solvation = -27878.171046 eV Core-core repulsion = 24097.641472 eV Total energy + Delta-G solvation = -3780.529575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.41404 -41.52790 -39.01305 -37.06780 -36.20695 -35.04460 -33.79593 -32.39568 -31.76303 -31.51174 -29.42961 -27.80018 -26.33635 -24.78810 -24.51326 -24.41231 -22.92362 -22.35134 -21.31739 -20.25636 -19.33370 -18.89972 -18.25466 -17.56886 -16.75113 -16.49916 -16.26374 -15.94175 -15.58784 -15.48837 -15.37532 -15.12160 -14.94303 -14.62459 -14.47911 -14.27938 -14.07963 -13.77755 -13.66130 -13.33151 -13.07640 -12.85793 -12.75979 -12.74648 -12.72342 -12.55290 -12.25952 -12.14267 -12.04348 -11.92601 -11.84634 -11.72282 -11.41790 -11.37826 -10.95312 -10.75798 -10.25739 -9.84812 -9.02663 -7.93013 -5.23725 0.40786 0.68488 1.40792 1.50656 1.53965 1.60052 1.71549 1.77149 2.59641 3.03232 3.14434 3.35788 3.44515 3.59611 3.76632 3.77936 3.82764 3.92768 4.02764 4.12365 4.21446 4.25837 4.34218 4.38571 4.46577 4.53069 4.59929 4.65746 4.70119 4.73216 4.80945 4.83898 4.90868 5.00579 5.01397 5.04715 5.08141 5.12209 5.16342 5.30128 5.39273 5.47742 5.50512 5.52055 6.07106 6.26331 6.75516 7.33457 7.42133 8.03587 8.30637 9.30648 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.002898 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.248859 B = 9658.668683 C =10380.599072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.123 3.877 3 H 0.157 0.843 4 C 0.507 3.493 5 O -0.552 6.552 6 N -0.597 5.597 7 C 0.098 3.902 8 C -0.127 4.127 9 C -0.087 4.087 10 C -0.146 4.146 11 C -0.126 4.126 12 C 0.109 3.891 13 N -0.281 5.281 14 C -0.018 4.018 15 C -0.031 4.031 16 C 0.236 3.764 17 N -0.737 5.737 18 C -0.247 4.247 19 H 0.083 0.917 20 C -0.075 4.075 21 N -0.971 5.971 22 Si 0.979 3.021 23 H -0.273 1.273 24 H -0.296 1.296 25 H -0.278 1.278 26 N -0.285 5.285 27 N -0.087 5.087 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.037 0.963 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.037 0.963 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.210 0.790 44 H 0.031 0.969 45 H 0.056 0.944 46 H 0.372 0.628 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.427 7.205 26.830 29.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.019 3.981 3 H 0.174 0.826 4 C 0.292 3.708 5 O -0.429 6.429 6 N -0.329 5.329 7 C -0.023 4.023 8 C -0.165 4.165 9 C -0.105 4.105 10 C -0.204 4.204 11 C -0.164 4.164 12 C -0.013 4.013 13 N -0.076 5.076 14 C -0.169 4.169 15 C -0.168 4.168 16 C 0.108 3.892 17 N -0.380 5.380 18 C -0.379 4.379 19 H 0.101 0.899 20 C -0.267 4.267 21 N -0.622 5.622 22 Si 0.807 3.193 23 H -0.199 1.199 24 H -0.222 1.222 25 H -0.204 1.204 26 N -0.153 5.153 27 N -0.065 5.065 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.056 0.944 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.226 0.774 44 H 0.049 0.951 45 H 0.074 0.926 46 H 0.203 0.797 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.280 7.577 26.991 29.859 hybrid contribution -1.223 -0.932 -1.105 1.893 sum 9.057 6.646 25.885 28.218 Atomic orbital electron populations 1.22101 0.88061 1.05332 1.05557 1.22073 0.99106 0.98675 0.78253 0.82579 1.20562 0.82211 0.82667 0.85386 1.90722 1.56421 1.35444 1.60283 1.48287 1.14142 1.36965 1.33516 1.22032 0.91427 0.89615 0.99235 1.21842 0.96047 1.00845 0.97763 1.21130 0.94554 0.97284 0.97566 1.21808 0.96241 1.00935 1.01367 1.21961 0.94765 0.97992 1.01652 1.21787 0.94933 0.96442 0.88105 1.47299 1.17815 1.21700 1.20811 1.23573 1.03094 0.93453 0.96772 1.22173 0.94623 1.01012 0.98993 1.18936 0.95438 0.90200 0.84588 1.42462 1.67930 1.09625 1.17973 1.19651 1.29026 0.92793 0.96387 0.89933 1.25627 1.01987 0.97728 1.01364 1.69841 1.46456 1.14632 1.31267 0.85134 0.77903 0.77725 0.78507 1.19901 1.22228 1.20435 1.75019 1.22791 1.04101 1.13352 1.78096 1.04590 1.21132 1.02724 0.86812 0.89825 0.90807 0.89673 0.87555 0.89052 0.94390 0.88687 0.94524 0.91810 0.91516 0.88625 0.94410 0.88396 0.90703 0.77367 0.95086 0.92624 0.79670 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.34 71.98 0.60 -1.97 16 2 C 0.12 2.42 2.78 44.24 0.12 2.54 16 3 H 0.16 2.18 6.36 -2.39 -0.02 2.17 16 4 C 0.51 11.03 7.15 87.66 0.63 11.66 16 5 O -0.55 -15.26 15.42 -3.04 -0.05 -15.31 16 6 N -0.60 -10.39 2.98 -819.72 -2.44 -12.84 16 7 C 0.10 1.33 6.24 86.22 0.54 1.87 16 8 C -0.13 -1.96 5.34 30.53 0.16 -1.80 16 9 C -0.09 -1.05 2.68 -10.77 -0.03 -1.08 16 10 C -0.15 -1.85 9.19 71.98 0.66 -1.19 16 11 C -0.13 -1.78 5.36 30.67 0.16 -1.61 16 12 C 0.11 1.63 6.42 86.36 0.55 2.18 16 13 N -0.28 -7.85 3.24 -330.74 -1.07 -8.92 16 14 C -0.02 -0.57 10.63 83.49 0.89 0.31 16 15 C -0.03 -1.20 6.61 41.59 0.28 -0.92 16 16 C 0.24 10.31 6.82 85.63 0.58 10.89 16 17 N -0.74 -39.63 5.59 -347.18 -1.94 -41.58 16 18 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 19 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 21 N -0.97 -61.15 13.06 21.65 0.28 -60.87 16 22 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 N -0.28 -11.54 12.41 -48.60 -0.60 -12.14 16 27 N -0.09 -2.86 12.37 37.02 0.46 -2.40 16 28 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.44 6.97 -2.39 -0.02 1.42 16 31 H 0.09 1.29 4.72 -2.39 -0.01 1.28 16 32 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.42 7.04 -2.38 -0.02 1.40 16 43 H 0.21 5.61 7.41 -2.91 -0.02 5.59 16 44 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.37 21.69 7.66 -92.71 -0.71 20.98 16 47 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -76.07 379.28 3.38 -72.69 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.26 Total: 28.88 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 6.46 Total: 3.61 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -5.32 Total: -138.74 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.05 Total: -15.31 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -76.07 3.38 -72.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603182978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.823 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds