Wall clock time and date at job start Fri Apr 10 2020 18:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47522 * 2 1 4 4 C 1.50700 * 109.47325 * 239.99886 * 2 1 3 5 5 O 1.21283 * 119.99691 * 245.47785 * 4 2 1 6 6 N 1.34776 * 119.99920 * 65.47824 * 4 2 1 7 7 C 1.46501 * 119.99871 * 4.88086 * 6 4 2 8 8 C 1.46501 * 119.99829 * 184.88058 * 6 4 2 9 9 C 1.50703 * 109.47001 * 90.00003 * 8 6 4 10 10 H 1.08000 * 119.99783 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99741 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99988 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 119.99693 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47314 * 59.99898 * 13 11 9 15 15 H 1.48505 * 109.47279 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47230 * 299.99439 * 13 11 9 17 17 N 1.46511 * 109.47393 * 119.99773 * 2 1 3 18 18 C 1.35313 * 125.86060 * 34.99861 * 17 2 1 19 19 C 1.35355 * 106.16940 * 179.97438 * 18 17 2 20 20 C 1.50703 * 126.74695 * 180.02562 * 19 18 17 21 21 C 1.53116 * 109.52432 * 274.99348 * 20 19 18 22 22 C 1.53031 * 109.28059 * 177.56279 * 21 20 19 23 23 N 1.46853 * 109.52382 * 300.82499 * 22 21 20 24 24 C 1.46839 * 111.19592 * 61.74221 * 23 22 21 25 25 C 1.53036 * 109.52568 * 298.25636 * 24 23 22 26 26 N 1.33767 * 106.49802 * 0.25980 * 19 18 17 27 27 N 1.28635 * 108.88457 * 359.56708 * 26 19 18 28 28 H 1.09001 * 109.46914 * 190.22275 * 1 2 3 29 29 H 1.09000 * 109.46905 * 310.22045 * 1 2 3 30 30 H 1.08994 * 109.46891 * 70.22294 * 1 2 3 31 31 H 1.08994 * 109.46910 * 95.76467 * 7 6 4 32 32 H 1.09004 * 109.46931 * 215.76476 * 7 6 4 33 33 H 1.09005 * 109.47064 * 335.76114 * 7 6 4 34 34 H 1.09000 * 109.47071 * 209.99911 * 8 6 4 35 35 H 1.08997 * 109.46813 * 329.99882 * 8 6 4 36 36 H 0.96999 * 119.99743 * 179.97438 * 12 11 9 37 37 H 1.07998 * 126.91805 * 0.02562 * 18 17 2 38 38 H 1.09010 * 109.51605 * 154.87321 * 20 19 18 39 39 H 1.09008 * 109.49751 * 57.62030 * 21 20 19 40 40 H 1.08997 * 109.53777 * 297.52753 * 21 20 19 41 41 H 1.09001 * 109.46540 * 180.80697 * 22 21 20 42 42 H 1.08997 * 109.46261 * 60.84042 * 22 21 20 43 43 H 1.00895 * 110.99624 * 185.83899 * 23 22 21 44 44 H 1.08997 * 109.46947 * 58.27433 * 24 23 22 45 45 H 1.09007 * 109.46279 * 178.24398 * 24 23 22 46 46 H 1.09006 * 109.50328 * 299.24465 * 25 24 23 47 47 H 1.09000 * 109.54216 * 179.14602 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6455 -1.7512 -1.1218 6 7 1.8003 -0.1892 -2.4515 7 6 1.1544 1.1196 -2.5785 8 6 2.1938 -0.9315 -3.6516 9 6 1.0559 -1.8167 -4.0904 10 1 0.1321 -1.8258 -3.5310 11 6 1.1946 -2.6158 -5.2055 12 7 2.3197 -2.6050 -5.8864 13 14 -0.2161 -3.7125 -5.7498 14 1 -1.4048 -2.8759 -6.0535 15 1 0.1832 -4.4660 -6.9656 16 1 -0.5481 -4.6682 -4.6627 17 7 2.0184 -0.6906 1.1963 18 6 1.4357 -1.7587 1.7884 19 6 2.2131 -2.0709 2.8515 20 6 1.9888 -3.1910 3.8346 21 6 1.0312 -2.7228 4.9339 22 6 0.7595 -3.8824 5.8948 23 7 0.1714 -5.0059 5.1543 24 6 1.0925 -5.5032 4.1244 25 6 1.3741 -4.3920 3.1105 26 7 3.2168 -1.1867 2.8610 27 7 3.0756 -0.3860 1.8642 28 1 -0.3633 -1.0114 0.1824 29 1 -0.3633 0.6636 0.7847 30 1 -0.3633 0.3477 -0.9670 31 1 1.9160 1.8909 -2.6932 32 1 0.5026 1.1198 -3.4522 33 1 0.5641 1.3218 -1.6847 34 1 2.4368 -0.2297 -4.4495 35 1 3.0667 -1.5452 -3.4292 36 1 2.4174 -3.1675 -6.6706 37 1 0.5326 -2.2615 1.4753 38 1 2.9406 -3.4809 4.2798 39 1 0.0937 -2.3952 4.4845 40 1 1.4815 -1.8946 5.4810 41 1 0.0668 -3.5565 6.6707 42 1 1.6955 -4.2004 6.3541 43 1 -0.1045 -5.7470 5.7809 44 1 2.0269 -5.8136 4.5919 45 1 0.6415 -6.3544 3.6143 46 1 0.4420 -4.0906 2.6325 47 1 2.0696 -4.7561 2.3544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603190525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:53 Heat of formation + Delta-G solvation = 69.509987 kcal Electronic energy + Delta-G solvation = -27801.766795 eV Core-core repulsion = 24021.990705 eV Total energy + Delta-G solvation = -3779.776090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.14894 -39.51145 -38.71452 -35.26665 -35.14601 -33.49903 -32.71405 -31.00794 -30.70104 -29.74202 -27.84881 -26.41704 -25.16202 -24.23917 -23.41348 -23.03307 -21.52205 -21.14557 -19.57932 -19.06989 -17.33334 -16.99255 -16.75071 -16.62261 -15.57060 -15.25018 -15.06242 -14.84242 -14.70040 -14.47120 -14.17323 -13.96628 -13.61448 -13.50648 -13.38675 -13.11179 -12.69128 -12.40068 -12.32757 -12.19568 -11.96281 -11.68014 -11.58302 -11.35078 -11.30167 -11.12228 -10.99753 -10.84007 -10.72036 -10.67258 -10.43269 -10.28296 -10.10147 -9.78679 -9.15799 -8.86133 -8.70137 -8.54141 -7.88735 -6.15233 -4.21592 1.77494 2.37471 2.71652 2.97773 3.23999 3.29730 3.31438 3.66112 3.98619 4.24490 4.33161 4.47576 4.59410 4.63154 4.69137 4.76716 4.95192 5.04866 5.10507 5.18925 5.20338 5.21322 5.29653 5.36771 5.37879 5.43554 5.55949 5.57619 5.64688 5.71631 5.76928 5.80168 5.87655 6.02251 6.07544 6.07807 6.31827 6.34627 6.67035 6.78311 6.87514 7.11988 7.26705 7.32834 7.78942 8.07897 8.10958 8.63897 8.72597 8.83686 9.43815 10.92958 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.003383 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.376026 B = 8275.404909 C = 9546.171437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 H 0.131 0.869 4 C 0.498 3.502 5 O -0.522 6.522 6 N -0.591 5.591 7 C 0.063 3.937 8 C 0.246 3.754 9 C -0.533 4.533 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.892 5.892 13 Si 0.900 3.100 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.276 1.276 17 N -0.266 5.266 18 C -0.022 4.022 19 C -0.021 4.021 20 C 0.004 3.996 21 C -0.106 4.106 22 C 0.059 3.941 23 N -0.691 5.691 24 C 0.059 3.941 25 C -0.113 4.113 26 N -0.270 5.270 27 N -0.083 5.083 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.046 0.954 36 H 0.266 0.734 37 H 0.184 0.816 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.341 0.659 44 H 0.031 0.969 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 2.749 18.850 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 H 0.149 0.851 4 C 0.281 3.719 5 O -0.397 6.397 6 N -0.324 5.324 7 C -0.080 4.080 8 C 0.127 3.873 9 C -0.572 4.572 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.530 5.530 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.201 1.201 17 N -0.058 5.058 18 C -0.173 4.173 19 C -0.159 4.159 20 C -0.017 4.017 21 C -0.145 4.145 22 C -0.071 4.071 23 N -0.323 5.323 24 C -0.070 4.070 25 C -0.151 4.151 26 N -0.136 5.136 27 N -0.062 5.062 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.201 0.799 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.159 0.841 44 H 0.050 0.950 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.814 3.519 18.343 19.561 hybrid contribution -1.004 -1.661 -0.294 1.963 sum -6.818 1.858 18.048 19.382 Atomic orbital electron populations 1.22372 0.90047 1.04827 1.05401 1.21660 0.97169 0.97908 0.81829 0.85141 1.20013 0.81594 0.86074 0.84248 1.90761 1.40187 1.23161 1.85632 1.48084 1.58294 1.19270 1.06712 1.22053 0.97932 0.84902 1.03152 1.19377 0.96971 0.91419 0.79513 1.21336 1.00075 1.24497 1.11273 0.92413 1.24942 0.96074 0.96725 0.96248 1.69919 1.24884 1.39735 1.18473 0.86537 0.82055 0.80621 0.78100 1.20135 1.21066 1.20136 1.46837 1.17312 1.21658 1.20021 1.23133 1.03439 0.93634 0.97054 1.21693 0.94630 1.00515 0.99067 1.19392 0.99378 0.90346 0.92587 1.21626 0.99552 0.97220 0.96083 1.21922 0.97705 0.91954 0.95472 1.60282 1.42805 1.11779 1.17401 1.21920 0.94387 0.97259 0.93453 1.21685 1.01532 0.94294 0.97591 1.74966 1.21072 1.04016 1.13573 1.78233 1.03689 1.21869 1.02404 0.90378 0.90327 0.87705 0.92947 0.90186 0.91371 0.94537 0.93640 0.92474 0.79939 0.89896 0.90966 0.91267 0.90719 0.95095 0.84117 0.95047 0.90456 0.90735 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 8.52 37.16 0.32 -1.48 16 2 C 0.12 1.75 2.82 -69.08 -0.19 1.55 16 3 H 0.13 1.57 7.74 -51.93 -0.40 1.17 16 4 C 0.50 9.88 7.05 -10.99 -0.08 9.80 16 5 O -0.52 -13.07 15.92 5.56 0.09 -12.99 16 6 N -0.59 -11.62 2.85 -182.95 -0.52 -12.15 16 7 C 0.06 0.86 9.72 59.85 0.58 1.44 16 8 C 0.25 6.17 5.23 -5.19 -0.03 6.15 16 9 C -0.53 -14.39 9.39 -34.44 -0.32 -14.71 16 10 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 13 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 N -0.27 -4.36 2.78 -55.88 -0.16 -4.51 16 18 C -0.02 -0.32 9.73 -17.04 -0.17 -0.49 16 19 C -0.02 -0.32 6.17 -82.78 -0.51 -0.83 16 20 C 0.00 0.04 2.72 -91.65 -0.25 -0.21 16 21 C -0.11 -1.06 5.36 -26.66 -0.14 -1.20 16 22 C 0.06 0.48 6.55 -3.83 -0.03 0.46 16 23 N -0.69 -5.85 6.85 -113.82 -0.78 -6.63 16 24 C 0.06 0.54 6.55 -3.84 -0.03 0.51 16 25 C -0.11 -1.24 5.02 -26.65 -0.13 -1.38 16 26 N -0.27 -4.84 12.41 33.29 0.41 -4.43 16 27 N -0.08 -1.54 13.16 60.35 0.79 -0.74 16 28 H 0.08 0.87 6.66 -51.93 -0.35 0.52 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 1.05 5.40 -51.93 -0.28 0.77 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 33 H 0.07 0.68 4.11 -51.93 -0.21 0.47 16 34 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.05 1.32 7.36 -51.93 -0.38 0.94 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.18 2.31 6.44 -52.49 -0.34 1.97 16 38 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.34 2.23 8.90 -39.29 -0.35 1.89 16 44 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.83 7.26 -51.93 -0.38 0.46 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -35.07 376.00 -7.15 -42.23 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.30 Total: 1.42 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.07 Total: 1.27 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.49 Total: -53.63 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.07 -7.15 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603190525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.736 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds