Wall clock time and date at job start Fri Apr 10 2020 18:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47464 * 2 1 4 4 C 1.46497 * 120.00040 * 270.00444 * 3 2 1 5 5 C 1.50710 * 109.46700 * 269.99395 * 4 3 2 6 6 H 1.07992 * 119.99996 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99477 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00190 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99526 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47301 * 90.00171 * 9 7 5 11 11 H 1.48511 * 109.46979 * 209.99752 * 9 7 5 12 12 H 1.48493 * 109.47392 * 329.99512 * 9 7 5 13 13 C 1.34779 * 119.99721 * 89.99612 * 3 2 1 14 14 O 1.21280 * 119.99589 * 180.02562 * 13 3 2 15 15 C 1.50705 * 120.00189 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.47187 * 179.97438 * 15 13 3 17 17 C 1.35309 * 125.87027 * 124.97249 * 16 15 13 18 18 C 1.35353 * 106.17498 * 179.97438 * 17 16 15 19 19 C 1.50706 * 126.75076 * 179.97438 * 18 17 16 20 20 C 1.53116 * 109.52014 * 34.87486 * 19 18 17 21 21 C 1.53051 * 109.27280 * 182.50363 * 20 19 18 22 22 N 1.46845 * 109.57545 * 59.08418 * 21 20 19 23 23 C 1.46843 * 111.19636 * 298.28866 * 22 21 20 24 24 C 1.53038 * 109.52473 * 61.74487 * 23 22 21 25 25 N 1.33775 * 106.49785 * 359.97438 * 18 17 16 26 26 N 1.28637 * 108.88137 * 0.02562 * 25 18 17 27 27 H 1.09001 * 109.47463 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46962 * 299.99781 * 1 2 3 29 29 H 1.08998 * 109.47245 * 59.99615 * 1 2 3 30 30 H 1.09003 * 109.47632 * 239.99878 * 2 1 3 31 31 H 1.08998 * 109.47245 * 120.00385 * 2 1 3 32 32 H 1.08997 * 109.47089 * 29.99408 * 4 3 2 33 33 H 1.09004 * 109.46908 * 150.00000 * 4 3 2 34 34 H 0.97007 * 120.00007 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.46896 * 59.99408 * 15 13 3 36 36 H 1.09007 * 109.46895 * 299.99514 * 15 13 3 37 37 H 1.08002 * 126.91313 * 0.02562 * 17 16 15 38 38 H 1.09000 * 109.51736 * 154.99698 * 19 18 17 39 39 H 1.09004 * 109.50752 * 302.37669 * 20 19 18 40 40 H 1.09004 * 109.50901 * 62.49980 * 20 19 18 41 41 H 1.08997 * 109.40638 * 299.06442 * 21 20 19 42 42 H 1.08997 * 109.45132 * 179.12622 * 21 20 19 43 43 H 1.00900 * 111.00150 * 62.38324 * 22 21 20 44 44 H 1.08998 * 109.46743 * 301.72655 * 23 22 21 45 45 H 1.08998 * 109.46649 * 181.75594 * 23 22 21 46 46 H 1.09006 * 109.50836 * 180.88080 * 24 23 22 47 47 H 1.08996 * 109.54110 * 60.77731 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1266 -3.6175 9 14 5.9134 2.0964 -3.4169 10 1 5.9761 0.8759 -4.2606 11 1 6.3930 3.2641 -4.1993 12 1 6.7736 1.9156 -2.2201 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3059 2.4724 16 7 2.3100 2.2033 3.5859 17 6 1.4757 2.5380 4.5973 18 6 2.1710 3.3809 5.3962 19 6 1.6789 4.0359 6.6611 20 6 0.7384 3.0797 7.3998 21 6 0.1932 3.7732 8.6505 22 7 -0.5246 4.9942 8.2627 23 6 0.3709 5.9469 7.5944 24 6 0.9201 5.3190 6.3113 25 7 3.3808 3.5183 4.8420 26 7 3.4311 2.8080 3.7707 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0283 33 1 2.0956 3.1411 -1.1383 34 1 3.6757 3.5177 -4.4430 35 1 2.6226 0.4186 2.5299 36 1 0.9442 1.0115 2.5302 37 1 0.4598 2.2000 4.7391 38 1 2.5282 4.2775 7.3002 39 1 -0.0900 2.8066 6.7461 40 1 1.2853 2.1824 7.6893 41 1 1.0209 4.0326 9.3107 42 1 -0.4889 3.1006 9.1704 43 1 -1.3201 4.7768 7.6814 44 1 1.1978 6.1962 8.2594 45 1 -0.1820 6.8531 7.3472 46 1 1.5970 6.0205 5.8235 47 1 0.0953 5.0821 5.6393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603209088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:06 Heat of formation + Delta-G solvation = 31.842782 kcal Electronic energy + Delta-G solvation = -27305.982147 eV Core-core repulsion = 23524.572684 eV Total energy + Delta-G solvation = -3781.409463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.31018 -40.84870 -39.70869 -37.14454 -35.76846 -34.92097 -34.00638 -31.77050 -31.69157 -30.74445 -30.26771 -28.49080 -25.27282 -25.18146 -24.32449 -23.85338 -23.05680 -22.43760 -20.96434 -20.13640 -18.79233 -18.57015 -18.24678 -17.21633 -16.90313 -16.84746 -16.32939 -16.18702 -15.81028 -15.51131 -15.33396 -14.98669 -14.82837 -14.70913 -14.48616 -14.15054 -13.89687 -13.62487 -13.43471 -13.27824 -13.14945 -13.10878 -12.78429 -12.71520 -12.55421 -12.34603 -12.21239 -12.11239 -11.96088 -11.90048 -11.78491 -11.69108 -11.37837 -11.32442 -10.68896 -10.64319 -10.09392 -9.56349 -9.28155 -8.28229 -6.42214 0.59575 1.28311 1.31760 1.35734 1.45249 1.54051 1.58501 2.19680 2.36282 3.02204 3.17242 3.35948 3.49066 3.62033 3.83152 3.88482 3.92254 3.96547 4.16062 4.20180 4.22895 4.29993 4.39811 4.48112 4.58243 4.61688 4.64500 4.82314 4.89114 4.95132 4.97399 5.02280 5.04408 5.09645 5.12275 5.15840 5.22103 5.25321 5.40701 5.41483 5.49938 5.56043 5.76828 5.99879 6.13545 6.58124 6.58190 6.68376 7.18781 7.33086 7.53887 8.79008 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.002691 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.498407 B =10401.513633 C =10988.319649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.091 3.909 3 N -0.594 5.594 4 C 0.265 3.735 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.964 3.036 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.277 1.277 13 C 0.483 3.517 14 O -0.581 6.581 15 C 0.102 3.898 16 N -0.277 5.277 17 C -0.034 4.034 18 C -0.029 4.029 19 C 0.006 3.994 20 C -0.139 4.139 21 C 0.060 3.940 22 N -0.690 5.690 23 C 0.065 3.935 24 C -0.143 4.143 25 N -0.314 5.314 26 N -0.109 5.109 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.030 0.970 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.154 0.846 36 H 0.186 0.814 37 H 0.237 0.763 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.349 0.651 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.046 0.954 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 -8.519 22.354 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.031 4.031 3 N -0.325 5.325 4 C 0.143 3.857 5 C -0.581 4.581 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.788 3.212 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.202 1.202 13 C 0.270 3.730 14 O -0.460 6.460 15 C -0.021 4.021 16 N -0.070 5.070 17 C -0.184 4.184 18 C -0.168 4.168 19 C -0.014 4.014 20 C -0.179 4.179 21 C -0.070 4.070 22 N -0.318 5.318 23 C -0.065 4.065 24 C -0.183 4.183 25 N -0.180 5.180 26 N -0.088 5.088 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.048 0.952 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.171 0.829 36 H 0.203 0.797 37 H 0.253 0.747 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.167 0.833 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.064 0.936 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.071 -7.333 22.202 26.314 hybrid contribution 0.504 -0.141 -1.865 1.937 sum -11.567 -7.473 20.337 24.561 Atomic orbital electron populations 1.22194 0.93889 1.03965 1.02083 1.21949 0.95788 0.80556 1.04779 1.48229 1.63349 1.15395 1.05541 1.18708 0.95325 0.91386 0.80234 1.21700 0.97987 1.32014 1.06435 0.92933 1.25822 1.02223 0.94479 0.96556 1.70038 1.37718 1.34141 1.14848 0.85468 0.79170 0.78356 0.78158 1.18323 1.20783 1.20189 1.20963 0.78625 0.86913 0.86542 1.90780 1.47031 1.20702 1.87535 1.22358 1.08578 0.91279 0.79921 1.47064 1.09779 1.31546 1.18659 1.24001 1.00767 1.03583 0.90097 1.22499 0.91171 1.01758 1.01388 1.19489 0.98069 0.94673 0.89205 1.22298 0.99013 0.98218 0.98326 1.22063 0.98595 0.90771 0.95580 1.60667 1.10406 1.13901 1.46869 1.21957 0.96592 0.95643 0.92299 1.22269 0.99901 0.96336 0.99805 1.75030 1.21648 1.17785 1.03515 1.78469 1.08138 1.08743 1.13401 0.88151 0.91258 0.94505 0.90662 0.87214 0.95243 0.98935 0.92387 0.82864 0.79726 0.74691 0.90760 0.89916 0.90563 0.91331 0.88622 0.83285 0.91100 0.89883 0.93552 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 10.24 71.98 0.74 -2.23 16 2 C 0.09 2.23 5.93 86.38 0.51 2.74 16 3 N -0.59 -23.02 2.46 -826.14 -2.03 -25.05 16 4 C 0.26 13.95 5.16 85.64 0.44 14.39 16 5 C -0.54 -31.27 9.39 25.60 0.24 -31.03 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.48 5.46 84.65 0.46 0.95 16 8 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 9 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 C 0.48 18.90 7.69 87.66 0.67 19.57 16 14 O -0.58 -30.96 15.26 -3.03 -0.05 -31.01 16 15 C 0.10 2.38 5.49 85.63 0.47 2.85 16 16 N -0.28 -8.20 3.20 -351.46 -1.12 -9.32 16 17 C -0.03 -0.75 10.74 83.49 0.90 0.15 16 18 C -0.03 -0.78 6.17 41.60 0.26 -0.53 16 19 C 0.01 0.12 2.71 -11.46 -0.03 0.09 16 20 C -0.14 -1.55 5.01 30.65 0.15 -1.40 16 21 C 0.06 0.60 6.55 86.33 0.57 1.16 16 22 N -0.69 -8.14 6.87 -514.01 -3.53 -11.67 16 23 C 0.07 0.93 6.55 86.33 0.57 1.49 16 24 C -0.14 -2.62 5.35 30.65 0.16 -2.46 16 25 N -0.31 -11.89 12.41 -48.59 -0.60 -12.49 16 26 N -0.11 -4.39 12.13 37.02 0.45 -3.94 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 0.98 7.22 -2.39 -0.02 0.96 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 31 H 0.11 1.71 6.44 -2.39 -0.02 1.69 16 32 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 33 H -0.01 -0.47 7.42 -2.38 -0.02 -0.48 16 34 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 35 H 0.15 2.69 7.40 -2.39 -0.02 2.67 16 36 H 0.19 2.06 7.11 -2.38 -0.02 2.04 16 37 H 0.24 2.33 7.42 -2.91 -0.02 2.31 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 0.65 7.26 -2.38 -0.02 0.64 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.35 3.21 8.86 -89.69 -0.79 2.42 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -90.01 381.73 1.71 -88.30 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.18 Total: 7.88 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.11 Total: 5.76 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -6.55 Total: -118.70 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.05 Total: -31.01 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -90.01 1.71 -88.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603209088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.140 kcal (2) G-P(sol) polarization free energy of solvation -90.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds