Wall clock time and date at job start Fri Apr 10 2020 18:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47063 * 2 1 4 4 C 1.53003 * 109.47078 * 119.99388 * 2 1 3 5 5 N 1.46496 * 109.46953 * 185.00022 * 4 2 1 6 6 C 1.36887 * 126.40044 * 269.71364 * 5 4 2 7 7 C 1.34665 * 106.82176 * 179.84490 * 6 5 4 8 8 N 1.34130 * 108.01934 * 0.42298 * 7 6 5 9 9 C 1.30504 * 109.25414 * 359.73176 * 8 7 6 10 10 N 1.46496 * 109.47366 * 239.99740 * 2 1 3 11 11 C 1.34774 * 120.00211 * 84.99822 * 10 2 1 12 12 O 1.21586 * 119.99704 * 359.97438 * 11 10 2 13 13 N 1.34774 * 120.00303 * 180.02562 * 11 10 2 14 14 C 1.46493 * 120.00256 * 180.02562 * 13 11 10 15 15 C 1.53349 * 109.42022 * 275.12556 * 14 13 11 16 16 C 1.53196 * 109.15353 * 178.67345 * 15 14 13 17 17 N 1.46928 * 108.89135 * 54.57497 * 16 15 14 18 18 C 1.36936 * 120.63013 * 126.29699 * 17 16 15 19 19 H 1.07999 * 120.00022 * 331.83633 * 18 17 16 20 20 C 1.38813 * 120.00005 * 151.82709 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.09585 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.09475 * 20 18 17 23 23 H 1.48494 * 109.47083 * 60.00061 * 22 20 18 24 24 H 1.48500 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47024 * 300.00112 * 22 20 18 26 26 C 1.46924 * 118.73859 * 306.32337 * 17 16 15 27 27 C 1.53044 * 109.46300 * 154.99736 * 14 13 11 28 28 H 1.09003 * 109.47368 * 300.00221 * 1 2 3 29 29 H 1.08994 * 109.47226 * 60.00571 * 1 2 3 30 30 H 1.09006 * 109.47215 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47464 * 305.00222 * 4 2 1 32 32 H 1.08998 * 109.46991 * 65.00484 * 4 2 1 33 33 H 1.08008 * 126.59021 * 359.97438 * 6 5 4 34 34 H 1.08001 * 125.99327 * 180.12433 * 7 6 5 35 35 H 1.07999 * 125.65112 * 180.02562 * 9 8 7 36 36 H 0.97001 * 119.99959 * 265.00638 * 10 2 1 37 37 H 0.97003 * 119.99662 * 359.97438 * 13 11 10 38 38 H 1.09003 * 109.46113 * 35.02623 * 14 13 11 39 39 H 1.08998 * 109.68701 * 58.70834 * 15 14 13 40 40 H 1.09000 * 109.47234 * 298.50902 * 15 14 13 41 41 H 1.08996 * 109.58345 * 294.72319 * 16 15 14 42 42 H 1.08994 * 109.58644 * 174.43734 * 16 15 14 43 43 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.58664 * 173.39523 * 26 17 16 45 45 H 1.08996 * 109.58580 * 293.67452 * 26 17 16 46 46 H 1.08992 * 109.49619 * 61.43083 * 27 14 13 47 47 H 1.09005 * 109.49321 * 301.33398 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.6177 1.3110 6 6 4.4001 -1.4979 0.7735 7 6 5.6275 -1.0225 1.0581 8 7 5.4810 0.1119 1.7586 9 6 4.2093 0.3606 1.9139 10 7 2.0184 -0.6906 -1.1961 11 6 2.1471 -0.0184 -2.3571 12 8 1.8574 1.1612 -2.4119 13 7 2.5959 -0.6539 -3.4576 14 6 2.7363 0.0770 -4.7194 15 6 1.3895 0.0920 -5.4526 16 6 1.5350 0.8858 -6.7548 17 7 2.6429 0.3192 -7.5360 18 6 2.4535 -0.0684 -8.8356 19 1 1.4781 -0.3949 -9.1650 20 6 3.5150 -0.0416 -9.7297 21 7 4.5972 0.6517 -9.4457 22 14 3.4076 -0.9895 -11.3358 23 1 2.2570 -0.4890 -12.1299 24 1 4.6622 -0.7997 -12.1073 25 1 3.2186 -2.4338 -11.0465 26 6 3.9577 0.1760 -6.8962 27 6 3.7886 -0.6105 -5.5925 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -0.2616 2.1370 32 1 1.7517 -1.7714 1.2057 33 1 4.1701 -2.3992 0.2246 34 1 6.5655 -1.4777 0.7763 35 1 3.7931 1.2085 2.4374 36 1 2.2490 -1.6318 -1.1525 37 1 2.8266 -1.5951 -3.4140 38 1 3.0482 1.1009 -4.5133 39 1 0.6339 0.5616 -4.8228 40 1 1.0890 -0.9304 -5.6814 41 1 1.7468 1.9299 -6.5245 42 1 0.6110 0.8183 -7.3289 43 1 5.3390 0.6701 -10.0703 44 1 4.6318 -0.3620 -7.5627 45 1 4.3681 1.1623 -6.6798 46 1 3.4655 -1.6263 -5.8197 47 1 4.7394 -0.6411 -5.0602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609323259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:19 Heat of formation + Delta-G solvation = 53.687587 kcal Electronic energy + Delta-G solvation = -27468.079303 eV Core-core repulsion = 23687.617102 eV Total energy + Delta-G solvation = -3780.462201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.27731 -40.10026 -37.77863 -36.47576 -34.35956 -33.48896 -32.22110 -30.98998 -30.00512 -29.62256 -29.06345 -26.88984 -25.01898 -22.86399 -22.19716 -21.76872 -21.54925 -21.07531 -20.57917 -19.45670 -18.33279 -17.71592 -16.87488 -16.55432 -15.48872 -15.22469 -15.02318 -14.76714 -14.54967 -14.32813 -14.07621 -13.77506 -13.61136 -13.54113 -13.42010 -13.09396 -12.94398 -12.82815 -12.56829 -12.39417 -12.28707 -11.62946 -11.45534 -11.11012 -10.85126 -10.71586 -10.49746 -10.28572 -10.18211 -10.07318 -10.02865 -9.89687 -9.75289 -9.54076 -9.31557 -8.72643 -8.61945 -8.43778 -6.67992 -5.79127 -3.21511 1.81882 2.44018 2.66719 3.01132 3.31997 3.38216 3.44026 3.44949 4.09786 4.12015 4.32570 4.49591 4.50628 4.54694 4.64322 4.91706 5.00176 5.21264 5.27992 5.34065 5.40521 5.45900 5.51008 5.56521 5.61285 5.85683 5.89607 5.98049 6.08317 6.28883 6.30578 6.35710 6.48452 6.52124 6.56924 6.61219 6.79641 6.85733 6.91959 6.98704 7.07147 7.32648 7.62682 7.79093 7.87611 8.08329 8.45068 8.70665 9.21089 9.84320 10.41624 11.29805 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.002613 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.972869 B =10711.442316 C =11514.305488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.095 0.905 4 C 0.097 3.903 5 N -0.456 5.456 6 C -0.052 4.052 7 C -0.029 4.029 8 N -0.495 5.495 9 C 0.182 3.818 10 N -0.747 5.747 11 C 0.705 3.295 12 O -0.589 6.589 13 N -0.737 5.737 14 C 0.169 3.831 15 C -0.138 4.138 16 C 0.147 3.853 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.175 3.825 27 C -0.145 4.145 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.202 0.798 36 H 0.391 0.609 37 H 0.390 0.610 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.255 0.745 44 H 0.091 0.909 45 H 0.021 0.979 46 H 0.059 0.941 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 -7.177 23.800 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.114 0.886 4 C -0.027 4.027 5 N -0.139 5.139 6 C -0.185 4.185 7 C -0.177 4.177 8 N -0.213 5.213 9 C -0.100 4.100 10 N -0.403 5.403 11 C 0.405 3.595 12 O -0.466 6.466 13 N -0.390 5.390 14 C 0.066 3.934 15 C -0.179 4.179 16 C 0.020 3.980 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.048 3.952 27 C -0.185 4.185 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.187 0.813 34 H 0.185 0.815 35 H 0.219 0.781 36 H 0.224 0.776 37 H 0.223 0.777 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.039 0.961 46 H 0.077 0.923 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.458 -5.547 23.894 25.129 hybrid contribution -0.490 -1.942 -1.130 2.300 sum -5.948 -7.488 22.764 24.691 Atomic orbital electron populations 1.22160 0.94044 1.02498 1.03473 1.21110 0.94474 0.97842 0.82512 0.88649 1.22302 0.77300 1.03419 0.99678 1.45494 1.06910 1.20110 1.41391 1.22630 0.89901 0.99005 1.06942 1.22301 0.97312 0.95085 1.02965 1.70296 1.16447 1.16117 1.18429 1.24998 0.87332 0.95698 1.02006 1.45134 1.72907 1.13224 1.09070 1.15962 0.78269 0.85129 0.80131 1.90924 1.56850 1.14319 1.84529 1.45536 1.70320 1.13564 1.09600 1.20973 0.96163 0.96100 0.80209 1.22437 0.96229 1.01087 0.98105 1.20870 0.92374 0.94233 0.90483 1.44080 1.06057 1.71616 1.09774 1.19145 0.96583 1.37096 0.85485 0.91718 1.25058 0.97942 0.99009 0.97621 1.70015 1.07016 1.40745 1.36945 0.86363 0.76901 0.80066 0.83392 1.20882 1.21624 1.21078 1.20737 0.88384 0.96630 0.89435 1.22534 0.96571 1.00642 0.98802 0.91401 0.90863 0.92233 0.87229 0.88503 0.81301 0.81525 0.78101 0.77609 0.77735 0.90159 0.92771 0.92530 0.96197 0.92648 0.93525 0.89057 0.96064 0.92272 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.48 37.16 0.35 -0.72 16 2 C 0.15 1.11 2.81 -67.93 -0.19 0.91 16 3 H 0.10 1.00 7.58 -51.93 -0.39 0.60 16 4 C 0.10 0.43 5.65 -4.04 -0.02 0.41 16 5 N -0.46 -3.45 2.69 -118.58 -0.32 -3.77 16 6 C -0.05 -0.43 11.30 -16.56 -0.19 -0.62 16 7 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 8 N -0.50 -6.16 11.25 -14.67 -0.17 -6.32 16 9 C 0.18 1.72 12.56 -90.37 -1.14 0.58 16 10 N -0.75 -6.85 4.78 -58.68 -0.28 -7.13 16 11 C 0.71 10.02 8.49 -86.92 -0.74 9.28 16 12 O -0.59 -11.00 15.67 5.29 0.08 -10.92 16 13 N -0.74 -10.17 5.08 -58.48 -0.30 -10.47 16 14 C 0.17 2.97 2.42 -67.73 -0.16 2.81 16 15 C -0.14 -2.54 5.68 -26.45 -0.15 -2.69 16 16 C 0.15 3.20 6.51 -3.71 -0.02 3.18 16 17 N -0.59 -14.88 2.99 -172.32 -0.52 -15.39 16 18 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 19 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -26.14 11.20 55.49 0.62 -25.52 16 22 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 27 C -0.15 -2.68 5.55 -26.61 -0.15 -2.82 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.39 2.54 8.57 -40.82 -0.35 2.19 16 37 H 0.39 4.24 8.62 -40.82 -0.35 3.89 16 38 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -35.44 382.96 -10.68 -46.13 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.68 Total: 4.31 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -2.87 Total: 6.80 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -0.96 Total: -68.61 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.44 -10.68 -46.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609323259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.813 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds