Wall clock time and date at job start Fri Apr 10 2020 18:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.46880 * 2 1 4 4 C 1.46901 * 110.99553 * 290.13319 * 3 2 1 5 5 C 1.53240 * 109.33599 * 172.74791 * 4 3 2 6 6 N 1.47072 * 108.52180 * 53.82984 * 5 4 3 7 7 C 1.34783 * 120.88082 * 128.83716 * 6 5 4 8 8 O 1.21832 * 120.00185 * 180.02562 * 7 6 5 9 9 N 1.33836 * 119.99927 * 359.97438 * 7 6 5 10 10 C 1.32934 * 120.00198 * 180.02562 * 9 7 6 11 11 C 1.41207 * 126.37545 * 0.02631 * 10 9 7 12 12 C 1.34955 * 108.24242 * 179.97438 * 11 10 9 13 13 N 1.36458 * 108.94826 * 0.02562 * 12 11 10 14 14 C 1.46501 * 125.85247 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47354 * 84.97122 * 14 13 12 16 16 H 1.08000 * 119.99908 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00184 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99533 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00034 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47325 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46692 * 119.99869 * 19 17 15 22 22 H 1.48496 * 109.47078 * 239.99700 * 19 17 15 23 23 N 1.37417 * 126.37883 * 179.72014 * 10 9 7 24 24 H 0.96998 * 126.36630 * 359.96875 * 23 10 9 25 25 C 1.47077 * 118.24256 * 308.81405 * 6 5 4 26 26 C 1.46897 * 111.00053 * 165.83608 * 3 2 1 27 27 H 1.09004 * 109.49500 * 67.26238 * 26 3 2 28 28 C 1.53007 * 109.49332 * 307.21101 * 26 3 2 29 29 H 1.09006 * 109.46836 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47481 * 300.00129 * 1 2 3 31 31 H 1.08996 * 109.47162 * 60.00582 * 1 2 3 32 32 H 1.08998 * 109.47692 * 239.99386 * 2 1 3 33 33 H 1.09006 * 109.47135 * 119.99465 * 2 1 3 34 34 H 1.08992 * 109.49788 * 292.70574 * 4 3 2 35 35 H 1.09002 * 109.48946 * 52.76686 * 4 3 2 36 36 H 1.09002 * 109.62505 * 173.54329 * 5 4 3 37 37 H 1.09001 * 109.63098 * 293.92601 * 5 4 3 38 38 H 1.08005 * 125.88184 * 0.04045 * 11 10 9 39 39 H 1.08005 * 125.52834 * 180.02562 * 12 11 10 40 40 H 1.08994 * 109.47044 * 204.97318 * 14 13 12 41 41 H 1.09006 * 109.46732 * 324.97149 * 14 13 12 42 42 H 0.97001 * 119.99843 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.62720 * 291.47770 * 25 6 5 44 44 H 1.09003 * 109.63048 * 170.89073 * 25 6 5 45 45 H 1.08997 * 109.46853 * 67.38640 * 28 26 3 46 46 H 1.08999 * 109.47105 * 187.38313 * 28 26 3 47 47 H 1.09002 * 109.46589 * 307.39033 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7499 2.0386 -1.2877 5 6 2.1083 3.5251 -1.1871 6 7 3.4946 3.6402 -0.7095 7 6 4.3909 4.4041 -1.3650 8 8 5.5353 4.4875 -0.9554 9 7 4.0242 5.0701 -2.4664 10 6 4.9083 5.8231 -3.1132 11 6 6.2619 6.0156 -2.7600 12 6 6.8208 6.8457 -3.6654 13 7 5.8777 7.1952 -4.5877 14 6 6.0862 8.0832 -5.7340 15 6 6.6422 7.2906 -6.8889 16 1 6.8226 6.2314 -6.7797 17 6 6.9215 7.9179 -8.0845 18 7 6.7023 9.2078 -8.2172 19 14 7.6114 6.9355 -9.5158 20 1 7.7645 5.5146 -9.1127 21 1 6.6820 7.0245 -10.6707 22 1 8.9351 7.4866 -9.9019 23 7 4.6768 6.5544 -4.2533 24 1 3.8379 6.6168 -4.7361 25 6 3.8768 2.9001 0.5027 26 6 3.4487 1.4382 0.3356 27 1 4.0278 0.9785 -0.4654 28 6 3.6948 0.6816 1.6425 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.3526 1.5711 -2.0662 35 1 0.6932 1.9347 -1.5340 36 1 2.0194 3.9904 -2.1688 37 1 1.4344 4.0177 -0.4861 38 1 6.7638 5.5736 -1.9119 39 1 7.8480 7.1795 -3.6608 40 1 5.1358 8.5307 -6.0246 41 1 6.7898 8.8698 -5.4610 42 1 6.8985 9.6491 -9.0585 43 1 3.3750 3.3318 1.3687 44 1 4.9571 2.9521 0.6382 45 1 3.5127 -0.3817 1.4865 46 1 4.7268 0.8307 1.9599 47 1 3.0200 1.0567 2.4120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611095652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:37 Heat of formation + Delta-G solvation = 70.218572 kcal Electronic energy + Delta-G solvation = -27061.037986 eV Core-core repulsion = 23281.292622 eV Total energy + Delta-G solvation = -3779.745364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.26275 -40.97956 -39.37484 -36.17416 -35.67531 -34.68580 -33.81761 -32.48756 -32.21715 -31.45210 -28.61850 -28.30804 -27.22209 -24.91829 -23.86019 -23.27843 -22.74416 -22.47283 -21.16737 -20.14715 -18.89713 -18.40212 -17.71651 -17.39075 -16.73758 -16.61292 -16.47548 -15.99449 -15.86439 -15.66231 -15.49771 -15.38493 -14.88576 -14.57633 -14.45786 -14.20103 -14.00348 -13.65600 -13.32961 -13.11059 -13.07475 -12.96770 -12.82207 -12.75362 -12.69865 -12.33730 -12.24152 -12.05798 -12.02124 -11.79170 -11.43197 -11.20809 -11.18469 -10.77586 -10.49985 -9.85200 -9.66887 -9.24772 -8.53261 -8.18743 -6.55538 0.31956 0.61595 1.36635 1.42029 1.51542 1.68010 2.13962 2.31169 2.84854 2.92828 2.99916 3.13483 3.79405 3.93312 3.94748 3.98707 4.15191 4.27778 4.28288 4.34584 4.44554 4.52845 4.57885 4.60083 4.64187 4.70479 4.79527 4.82862 4.87387 4.91502 4.97740 4.98466 5.08475 5.12555 5.17987 5.28356 5.32992 5.42256 5.52165 5.71449 5.82778 5.87247 6.08284 6.11902 6.16958 6.34113 6.58331 6.83601 6.99584 7.18291 8.08640 8.66723 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002368 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.031713 B =11821.581000 C =12320.588686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.042 3.958 3 N -0.533 5.533 4 C 0.047 3.953 5 C 0.130 3.870 6 N -0.615 5.615 7 C 0.674 3.326 8 O -0.661 6.661 9 N -0.716 5.716 10 C 0.471 3.529 11 C -0.347 4.347 12 C 0.177 3.823 13 N -0.351 5.351 14 C 0.268 3.732 15 C -0.564 4.564 16 H 0.058 0.942 17 C 0.030 3.970 18 N -0.913 5.913 19 Si 0.964 3.036 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.273 1.273 23 N -0.466 5.466 24 H 0.452 0.548 25 C 0.138 3.862 26 C 0.073 3.927 27 H 0.021 0.979 28 C -0.138 4.138 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.024 0.976 33 H 0.092 0.908 34 H 0.016 0.984 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.171 0.829 39 H 0.223 0.777 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.274 0.726 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 -12.792 13.717 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 N -0.259 5.259 4 C -0.082 4.082 5 C 0.007 3.993 6 N -0.350 5.350 7 C 0.374 3.626 8 O -0.546 6.546 9 N -0.480 5.480 10 C 0.218 3.782 11 C -0.380 4.380 12 C 0.033 3.967 13 N -0.136 5.136 14 C 0.151 3.849 15 C -0.602 4.602 16 H 0.076 0.924 17 C -0.173 4.173 18 N -0.551 5.551 19 Si 0.789 3.211 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.199 1.199 23 N -0.190 5.190 24 H 0.300 0.700 25 C 0.014 3.986 26 C -0.037 4.037 27 H 0.039 0.961 28 C -0.195 4.195 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.111 0.889 34 H 0.035 0.965 35 H 0.124 0.876 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.188 0.812 39 H 0.239 0.761 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.377 -12.243 13.646 20.593 hybrid contribution 1.075 -0.528 -1.739 2.112 sum -8.302 -12.771 11.907 19.334 Atomic orbital electron populations 1.21744 0.93661 1.02213 1.02306 1.22291 0.97057 0.87918 1.01287 1.62105 1.15448 1.17716 1.30619 1.22496 1.01975 0.94094 0.89587 1.21622 0.81098 0.95650 1.00944 1.47011 1.10962 1.48818 1.28187 1.16888 0.82863 0.80098 0.82705 1.90681 1.21182 1.70063 1.72693 1.68069 1.34982 1.27193 1.17791 1.18935 0.90743 0.85164 0.83377 1.22276 0.95113 1.12604 1.07982 1.23318 0.95445 0.92231 0.85689 1.47848 0.99587 1.40551 1.25638 1.19729 0.98794 0.87094 0.79275 1.21635 1.45296 0.95871 0.97414 0.92367 1.25594 0.95058 0.95825 1.00802 1.69966 1.47561 1.09981 1.27560 0.85408 0.78338 0.78651 0.78707 1.19842 1.20407 1.19865 1.44381 1.06112 1.43469 1.24997 0.69995 1.21590 1.00495 0.90241 0.86240 1.21949 0.88303 0.95152 0.98280 0.96135 1.21829 1.02669 0.99907 0.95121 0.91044 0.91926 0.92977 0.95756 0.88949 0.96525 0.87623 0.89188 0.91195 0.81213 0.76097 0.93825 0.91079 0.91710 0.90728 0.90784 0.90960 0.91327 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.93 71.98 0.71 -1.12 16 2 C 0.04 0.67 5.45 86.30 0.47 1.14 16 3 N -0.53 -11.07 4.44 -870.01 -3.87 -14.93 16 4 C 0.05 1.08 5.47 86.38 0.47 1.55 16 5 C 0.13 3.57 6.59 86.35 0.57 4.14 16 6 N -0.61 -20.67 3.01 -836.57 -2.52 -23.19 16 7 C 0.67 27.95 8.23 179.34 1.48 29.43 16 8 O -0.66 -30.34 12.71 -4.77 -0.06 -30.40 16 9 N -0.72 -29.03 9.09 -322.55 -2.93 -31.96 16 10 C 0.47 18.66 8.07 133.95 1.08 19.74 16 11 C -0.35 -13.24 9.52 22.24 0.21 -13.03 16 12 C 0.18 5.89 11.45 83.22 0.95 6.85 16 13 N -0.35 -12.82 3.63 -350.84 -1.28 -14.09 16 14 C 0.27 10.99 6.19 85.63 0.53 11.52 16 15 C -0.56 -26.44 9.39 25.60 0.24 -26.20 16 16 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 17 C 0.03 1.41 5.46 84.66 0.46 1.88 16 18 N -0.91 -45.78 13.29 21.45 0.28 -45.49 16 19 Si 0.96 38.97 29.54 68.60 2.03 41.00 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 23 N -0.47 -16.66 7.38 -54.79 -0.40 -17.06 16 24 H 0.45 14.23 8.96 -213.28 -1.91 12.32 16 25 C 0.14 3.90 5.88 86.35 0.51 4.40 16 26 C 0.07 1.66 2.60 45.00 0.12 1.78 16 27 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 28 C -0.14 -2.20 8.50 71.98 0.61 -1.58 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.70 6.55 -2.39 -0.02 0.69 16 32 H 0.02 0.43 8.08 -2.39 -0.02 0.41 16 33 H 0.09 1.25 5.59 -2.38 -0.01 1.24 16 34 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.11 1.93 6.36 -2.39 -0.02 1.92 16 36 H 0.09 2.70 6.91 -2.39 -0.02 2.68 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.17 7.00 5.77 -2.91 -0.02 6.98 16 39 H 0.22 5.51 8.06 -2.91 -0.02 5.49 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 42 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 2.35 7.06 -2.39 -0.02 2.33 16 45 H 0.07 0.95 6.48 -2.39 -0.02 0.94 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -62.29 374.50 -1.26 -63.55 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.93 Total: 32.08 kcal Atomic # 6 Polarization: 32.08 SS G_CDS: 8.42 Total: 40.50 kcal Atomic # 7 Polarization: -136.02 SS G_CDS: -10.71 Total: -146.73 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.06 Total: -30.40 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -62.29 -1.26 -63.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611095652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.771 kcal (2) G-P(sol) polarization free energy of solvation -62.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds