Wall clock time and date at job start Fri Apr 10 2020 18:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47412 * 2 1 4 4 N 1.46498 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.34815 * 126.59308 * 125.27309 * 4 3 2 6 6 C 1.36601 * 106.83971 * 180.10230 * 5 4 3 7 7 C 1.47523 * 125.77032 * 179.90129 * 6 5 4 8 8 O 1.21587 * 120.00352 * 359.71570 * 7 6 5 9 9 N 1.34779 * 119.99735 * 179.71804 * 7 6 5 10 10 C 1.46496 * 119.99949 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47305 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.51785 * 54.92441 * 11 10 9 13 13 C 1.53039 * 109.49860 * 174.99868 * 11 10 9 14 14 C 1.53033 * 109.52816 * 181.31222 * 13 11 10 15 15 C 1.53195 * 109.31118 * 298.64429 * 14 13 11 16 16 N 1.46917 * 108.77632 * 54.63683 * 15 14 13 17 17 C 1.36944 * 120.63334 * 126.41102 * 16 15 14 18 18 H 1.08002 * 119.99574 * 207.67406 * 17 16 15 19 19 C 1.38804 * 119.99723 * 27.67797 * 17 16 15 20 20 N 1.31617 * 120.00554 * 17.35018 * 19 17 16 21 21 Si 1.86804 * 119.99695 * 197.35734 * 19 17 16 22 22 H 1.48494 * 109.47415 * 59.99802 * 21 19 17 23 23 H 1.48506 * 109.47200 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46821 * 299.99362 * 21 19 17 25 25 C 1.46923 * 118.73848 * 306.38721 * 16 15 14 26 26 N 1.34401 * 108.45774 * 359.63553 * 6 5 4 27 27 N 1.28767 * 109.52462 * 0.22470 * 26 6 5 28 28 H 1.09003 * 109.47141 * 60.00218 * 1 2 3 29 29 H 1.09000 * 109.47801 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47154 * 300.00728 * 1 2 3 31 31 H 1.09003 * 109.47154 * 239.99272 * 2 1 3 32 32 H 1.09001 * 109.46635 * 119.99834 * 2 1 3 33 33 H 1.08997 * 109.47172 * 59.99693 * 3 2 1 34 34 H 1.09001 * 109.47085 * 299.99558 * 3 2 1 35 35 H 1.07998 * 126.58213 * 359.97146 * 5 4 3 36 36 H 0.96999 * 120.00220 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.47223 * 60.00055 * 10 9 7 38 38 H 1.08998 * 109.47337 * 300.00164 * 10 9 7 39 39 H 1.09006 * 109.45966 * 61.29814 * 13 11 10 40 40 H 1.09003 * 109.46232 * 301.32767 * 13 11 10 41 41 H 1.08997 * 109.49774 * 58.59578 * 14 13 11 42 42 H 1.08996 * 109.50356 * 178.69181 * 14 13 11 43 43 H 1.09006 * 109.58302 * 174.42140 * 15 14 13 44 44 H 1.08995 * 109.58732 * 294.70108 * 15 14 13 45 45 H 0.96998 * 120.00355 * 180.02562 * 20 19 17 46 46 H 1.08995 * 109.59196 * 173.39676 * 25 16 15 47 47 H 1.08995 * 109.58955 * 293.68275 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.3091 2.0672 -0.8828 6 6 5.5946 1.7986 -0.5067 7 6 6.8110 2.2782 -1.1897 8 8 6.7167 2.9734 -2.1827 9 7 8.0270 1.9457 -0.7129 10 6 9.2350 2.4215 -1.3914 11 6 10.4717 1.9063 -0.6523 12 1 10.4192 0.8208 -0.5672 13 6 11.7309 2.2974 -1.4291 14 6 12.9664 1.7542 -0.7076 15 6 13.0490 2.3732 0.6913 16 7 11.7826 2.1255 1.3936 17 6 11.7736 1.5322 2.6278 18 1 10.9156 0.9578 2.9446 19 6 12.8672 1.6691 3.4716 20 7 13.7506 2.6204 3.2551 21 14 13.0853 0.5029 4.9145 22 1 13.1914 -0.8908 4.4129 23 1 14.3228 0.8575 5.6550 24 1 11.9155 0.6146 5.8224 25 6 10.5259 2.5269 0.7469 26 7 5.5636 1.0283 0.5943 27 7 4.3404 0.7972 0.9236 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.8933 -0.5140 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9969 2.6637 -1.7273 36 1 8.1023 1.3914 0.0795 37 1 9.2433 3.5114 -1.3968 38 1 9.2446 2.0530 -2.4172 39 1 11.7957 3.3836 -1.4926 40 1 11.6831 1.8771 -2.4337 41 1 12.8904 0.6703 -0.6219 42 1 13.8613 2.0130 -1.2734 43 1 13.8694 1.9164 1.2450 44 1 13.2185 3.4465 0.6065 45 1 14.5150 2.7159 3.8445 46 1 9.6814 2.1716 1.3372 47 1 10.4859 3.6133 0.6689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611238625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:46 Heat of formation + Delta-G solvation = 40.602665 kcal Electronic energy + Delta-G solvation = -26683.221075 eV Core-core repulsion = 22902.191469 eV Total energy + Delta-G solvation = -3781.029606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.23574 -40.59694 -39.27197 -36.92369 -36.26329 -34.67772 -33.59374 -32.37622 -32.25478 -31.45048 -28.11119 -27.26324 -26.84748 -24.51294 -23.81568 -23.59897 -22.54391 -22.33998 -21.34062 -20.58953 -19.13035 -18.59556 -17.26256 -17.22082 -17.06570 -16.79443 -16.40500 -15.94519 -15.75863 -15.66974 -15.29627 -15.02012 -14.96785 -14.49574 -14.42567 -13.99625 -13.73353 -13.68619 -13.49802 -13.19574 -13.01541 -12.96057 -12.85622 -12.52021 -12.46259 -12.29809 -12.22314 -11.97370 -11.80352 -11.74980 -11.56573 -11.42254 -11.27851 -11.13360 -11.04760 -10.51881 -10.42116 -10.01164 -8.66724 -7.86230 -5.31280 0.15654 0.61043 1.11759 1.46635 1.48783 1.55614 2.15789 2.24328 2.51662 3.19106 3.27727 3.36122 3.61095 3.80645 3.83048 3.95685 4.00455 4.03738 4.09878 4.16374 4.23201 4.43713 4.46351 4.52170 4.59531 4.62941 4.72329 4.78471 4.82634 4.90800 4.92911 5.03196 5.11292 5.13283 5.17720 5.23795 5.32773 5.35464 5.39886 5.47862 5.50890 5.58408 5.68257 5.80846 6.38892 6.42124 6.89336 7.11690 7.16287 7.87833 8.39004 9.19614 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.002626 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.268645 B =10658.471416 C =12262.398698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.349 5.349 5 C 0.113 3.887 6 C -0.128 4.128 7 C 0.605 3.395 8 O -0.568 6.568 9 N -0.709 5.709 10 C 0.138 3.862 11 C -0.102 4.102 12 H 0.072 0.928 13 C -0.095 4.095 14 C -0.131 4.131 15 C 0.172 3.828 16 N -0.609 5.609 17 C -0.262 4.262 18 H 0.065 0.935 19 C -0.052 4.052 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.278 1.278 23 H -0.293 1.293 24 H -0.277 1.277 25 C 0.152 3.848 26 N -0.231 5.231 27 N -0.090 5.090 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.144 0.856 35 H 0.242 0.758 36 H 0.410 0.590 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.051 0.949 44 H -0.006 1.006 45 H 0.250 0.750 46 H 0.048 0.952 47 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.655 -2.567 -12.773 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.133 5.133 5 C -0.046 4.046 6 C -0.268 4.268 7 C 0.390 3.610 8 O -0.447 6.447 9 N -0.359 5.359 10 C 0.014 3.986 11 C -0.122 4.122 12 H 0.091 0.909 13 C -0.133 4.133 14 C -0.170 4.170 15 C 0.047 3.953 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.083 0.917 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.794 3.206 22 H -0.204 1.204 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.026 3.974 26 N -0.104 5.104 27 N -0.071 5.071 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.162 0.838 35 H 0.258 0.742 36 H 0.246 0.754 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.012 0.988 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -25.572 -2.917 -12.095 28.438 hybrid contribution 0.576 -0.032 0.834 1.014 sum -24.996 -2.949 -11.261 27.574 Atomic orbital electron populations 1.21677 0.92210 1.03066 1.03344 1.21783 0.98231 0.94395 1.02923 1.22668 0.69889 1.00541 1.07733 1.50902 1.10154 1.33452 1.18801 1.23894 0.88890 0.95716 0.96060 1.21532 0.95356 1.09938 0.99981 1.16909 0.82197 0.79165 0.82749 1.90762 1.87154 1.39998 1.26760 1.45915 1.05310 1.52913 1.31771 1.21386 0.81844 0.99236 0.96126 1.21718 0.94146 1.00675 0.95655 0.90924 1.21332 0.92791 1.00731 0.98457 1.22006 0.98284 0.99987 0.96701 1.20646 0.88715 0.95264 0.90686 1.44298 1.01602 1.70294 1.17045 1.19468 1.03245 1.23868 0.92634 0.91745 1.25774 0.99504 0.99018 1.00397 1.70186 1.15019 1.32294 1.40560 0.85371 0.76858 0.79114 0.79297 1.20391 1.21945 1.20285 1.21010 0.88498 0.95354 0.92532 1.74674 1.13880 1.10949 1.10880 1.81920 0.93455 1.18624 1.13069 0.90711 0.91945 0.91527 0.91699 0.92138 0.87016 0.83840 0.74235 0.75392 0.91664 0.90008 0.92276 0.89799 0.93033 0.90993 0.93032 0.98752 0.94142 0.93350 0.97344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.91 71.98 0.71 0.20 16 2 C -0.13 -1.04 6.14 30.59 0.19 -0.85 16 3 C 0.11 0.70 6.54 86.38 0.56 1.26 16 4 N -0.35 -5.64 3.69 -347.10 -1.28 -6.92 16 5 C 0.11 1.91 11.27 83.85 0.95 2.86 16 6 C -0.13 -3.28 6.99 40.82 0.29 -2.99 16 7 C 0.60 17.54 7.82 86.69 0.68 18.21 16 8 O -0.57 -18.14 16.86 -3.99 -0.07 -18.21 16 9 N -0.71 -20.68 5.33 -466.29 -2.48 -23.17 16 10 C 0.14 3.92 5.07 86.38 0.44 4.36 16 11 C -0.10 -3.33 2.37 -10.72 -0.03 -3.35 16 12 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 13 C -0.10 -2.95 5.17 30.62 0.16 -2.80 16 14 C -0.13 -4.85 6.08 30.67 0.19 -4.67 16 15 C 0.17 8.48 5.31 86.37 0.46 8.94 16 16 N -0.61 -31.31 2.99 -699.19 -2.09 -33.40 16 17 C -0.26 -14.81 9.58 84.03 0.81 -14.01 16 18 H 0.06 3.57 7.89 -2.91 -0.02 3.55 16 19 C -0.05 -2.96 4.91 84.86 0.42 -2.55 16 20 N -0.93 -56.59 11.19 21.65 0.24 -56.34 16 21 Si 0.97 46.14 29.59 68.60 2.03 48.17 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 C 0.15 6.40 5.60 86.35 0.48 6.89 16 26 N -0.23 -6.69 12.04 -49.99 -0.60 -7.29 16 27 N -0.09 -2.30 13.65 37.02 0.51 -1.79 16 28 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.07 0.18 8.14 -2.39 -0.02 0.17 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.14 -0.14 8.08 -2.39 -0.02 -0.16 16 35 H 0.24 2.05 8.06 -2.91 -0.02 2.02 16 36 H 0.41 12.29 7.39 -92.71 -0.69 11.60 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.05 2.87 6.04 -2.38 -0.01 2.86 16 44 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.05 2.04 7.14 -2.39 -0.02 2.02 16 47 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -75.28 384.46 2.82 -72.46 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.28 Total: 14.99 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 6.30 Total: 11.51 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -5.71 Total: -128.91 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.07 Total: -18.21 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -75.28 2.82 -72.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611238625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.058 kcal (2) G-P(sol) polarization free energy of solvation -75.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds