Wall clock time and date at job start Fri Apr 10 2020 18:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34942 * 126.03991 * 2 1 4 4 C 1.35316 * 107.74613 * 179.75096 * 3 2 1 5 5 C 1.50706 * 126.04256 * 180.27593 * 4 3 2 6 6 N 1.46899 * 109.47005 * 270.16455 * 5 4 3 7 7 C 1.46959 * 110.99926 * 293.80111 * 6 5 4 8 8 C 1.53047 * 109.36269 * 176.81240 * 7 6 5 9 9 N 1.46958 * 109.36764 * 58.39734 * 8 7 6 10 10 C 1.46900 * 111.00231 * 176.80680 * 9 8 7 11 11 C 1.50697 * 109.47568 * 293.80241 * 10 9 8 12 12 O 1.21281 * 119.99820 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00240 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00068 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47021 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00291 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99933 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00174 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00231 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46800 * 59.99543 * 19 17 15 21 21 H 1.48491 * 109.47388 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46955 * 299.99892 * 19 17 15 23 23 C 1.46954 * 110.87949 * 300.68104 * 9 8 7 24 24 C 1.46958 * 111.00178 * 169.99766 * 6 5 4 25 25 C 1.39870 * 107.92161 * 0.39436 * 4 3 2 26 26 N 1.30836 * 108.20019 * 359.59732 * 25 4 3 27 27 H 1.09002 * 109.47159 * 269.97891 * 1 2 3 28 28 H 1.08999 * 109.46542 * 29.97403 * 1 2 3 29 29 H 1.08999 * 109.47324 * 149.97201 * 1 2 3 30 30 H 1.08002 * 126.12737 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.46808 * 30.16339 * 5 4 3 32 32 H 1.08996 * 109.47016 * 150.16639 * 5 4 3 33 33 H 1.08997 * 109.48526 * 296.77550 * 7 6 5 34 34 H 1.08994 * 109.49029 * 56.84211 * 7 6 5 35 35 H 1.08999 * 109.48983 * 298.42831 * 8 7 6 36 36 H 1.09005 * 109.49043 * 178.36351 * 8 7 6 37 37 H 1.09002 * 109.46853 * 53.80331 * 10 9 8 38 38 H 1.08997 * 109.46941 * 173.79607 * 10 9 8 39 39 H 0.97002 * 119.99429 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.46969 * 299.99796 * 14 13 11 41 41 H 1.08998 * 109.47123 * 59.99402 * 14 13 11 42 42 H 0.96995 * 120.00083 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.48646 * 299.34427 * 23 9 8 44 44 H 1.09004 * 109.48790 * 179.28691 * 23 9 8 45 45 H 1.09005 * 109.48577 * 303.15812 * 24 6 5 46 46 H 1.08997 * 109.48329 * 63.21981 * 24 6 5 47 47 H 1.08002 * 125.90382 * 179.86983 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0056 5 6 4.7681 1.5451 0.0135 6 7 5.1705 1.8366 -1.3689 7 6 5.6232 0.6177 -2.0537 8 6 5.9570 0.9483 -3.5103 9 7 6.9958 1.9871 -3.5485 10 6 7.3983 2.2785 -4.9309 11 6 8.0812 1.0715 -5.5205 12 8 8.2187 0.0670 -4.8547 13 7 8.5383 1.1077 -6.7878 14 6 9.2017 -0.0660 -7.3611 15 6 9.6147 0.2331 -8.7792 16 1 9.4038 1.2005 -9.2104 17 6 10.2610 -0.7286 -9.5264 18 7 10.5175 -1.9069 -9.0014 19 14 10.7723 -0.3582 -11.2845 20 1 11.7091 0.7940 -11.2951 21 1 11.4448 -1.5478 -11.8655 22 1 9.5699 -0.0260 -12.0901 23 6 6.5430 3.2059 -2.8637 24 6 6.2093 2.8754 -1.4071 25 6 3.5347 -0.7322 0.0000 26 7 2.2891 -1.1328 0.0001 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3632 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 1.9282 2.1193 -0.0004 31 1 4.5426 2.4777 0.5307 32 1 5.5804 1.0316 0.5278 33 1 6.5119 0.2297 -1.5560 34 1 4.8324 -0.1318 -2.0229 35 1 5.0617 1.3106 -4.0154 36 1 6.3207 0.0518 -4.0126 37 1 6.5158 2.5218 -5.5226 38 1 8.0854 3.1246 -4.9385 39 1 8.4274 1.9107 -7.3206 40 1 10.0844 -0.3094 -6.7697 41 1 8.5144 -0.9119 -7.3531 42 1 10.9724 -2.5834 -9.5270 43 1 5.6544 3.5939 -3.3615 44 1 7.3339 3.9554 -2.8945 45 1 5.8456 3.7719 -0.9048 46 1 7.1046 2.5130 -0.9020 47 1 4.4054 -1.3712 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729931275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:02 Heat of formation + Delta-G solvation = 62.949007 kcal Electronic energy + Delta-G solvation = -26618.304647 eV Core-core repulsion = 22838.244051 eV Total energy + Delta-G solvation = -3780.060596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42401 -39.56317 -38.25125 -35.51301 -34.08012 -33.41495 -32.30280 -31.22487 -30.81067 -29.11009 -27.70651 -26.75992 -25.13577 -23.60365 -23.24076 -22.14715 -21.27726 -20.35033 -19.70326 -19.57373 -17.11509 -17.00359 -16.42452 -15.70557 -15.60967 -15.30129 -15.10805 -15.01048 -14.79834 -14.55492 -14.34631 -14.15135 -13.79105 -13.57001 -13.44307 -13.02136 -12.91153 -12.58285 -12.55289 -12.30565 -11.99469 -11.85328 -11.76403 -11.41662 -11.17839 -10.99018 -10.92877 -10.84707 -10.71973 -10.57018 -10.28488 -9.61290 -9.38608 -8.95844 -8.70501 -8.69542 -8.33711 -8.11378 -7.81058 -6.14340 -4.21292 1.68218 2.29684 2.54864 3.26468 3.31181 3.32690 3.43982 3.73947 4.00887 4.24322 4.29283 4.47805 4.59282 4.78452 4.83474 4.89312 5.02348 5.05452 5.07234 5.14131 5.21414 5.27768 5.38882 5.45377 5.48586 5.51443 5.59013 5.60432 5.66260 5.72202 5.78093 5.90091 5.96917 6.14580 6.26238 6.42293 6.76693 6.90711 6.98149 7.13266 7.23921 7.36516 7.48857 7.49527 7.55618 7.70583 8.00042 8.67740 8.82086 9.17365 9.45482 10.95774 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020874 B = 0.002127 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.064209 B =13161.174985 C =13894.982007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.380 5.380 3 C 0.072 3.928 4 C -0.229 4.229 5 C 0.134 3.866 6 N -0.539 5.539 7 C 0.063 3.937 8 C 0.054 3.946 9 N -0.520 5.520 10 C 0.036 3.964 11 C 0.499 3.501 12 O -0.539 6.539 13 N -0.716 5.716 14 C 0.252 3.748 15 C -0.544 4.544 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.058 3.942 24 C 0.059 3.941 25 C 0.056 3.944 26 N -0.299 5.299 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.389 0.611 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.043 0.957 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.888 11.770 19.227 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.075 4.075 4 C -0.241 4.241 5 C 0.005 3.995 6 N -0.264 5.264 7 C -0.065 4.065 8 C -0.074 4.074 9 N -0.245 5.245 10 C -0.095 4.095 11 C 0.283 3.717 12 O -0.417 6.417 13 N -0.365 5.365 14 C 0.131 3.869 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.071 4.071 24 C -0.069 4.069 25 C -0.131 4.131 26 N -0.120 5.120 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.189 0.811 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.221 0.779 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -18.647 9.821 19.652 28.816 hybrid contribution 0.755 1.277 -1.354 2.008 sum -17.892 11.098 18.299 27.895 Atomic orbital electron populations 1.21828 0.74359 1.04513 1.03167 1.48462 1.06587 1.03957 1.57251 1.22269 0.90771 0.93191 1.01258 1.19903 0.94314 0.93585 1.16265 1.20238 0.92817 0.97339 0.89059 1.62249 1.38989 1.09832 1.15303 1.22127 0.98807 0.91549 0.94010 1.22338 0.91838 0.96845 0.96332 1.61796 1.39811 1.08587 1.14351 1.21988 1.00005 0.97871 0.89641 1.20309 0.79958 0.89066 0.82398 1.90622 1.57340 1.33529 1.60189 1.46456 1.58650 1.18834 1.12556 1.19065 0.92441 0.82686 0.92692 1.21197 1.39525 1.00117 0.97352 0.91985 1.24959 0.95464 0.94795 0.98847 1.69967 1.40568 1.04452 1.37284 0.86475 0.78792 0.77806 0.83823 1.20079 1.21087 1.20098 1.22161 0.98817 0.92021 0.94059 1.22112 0.93361 0.95071 0.96349 1.23842 0.95185 0.94693 0.99363 1.77382 1.01717 1.08217 1.24678 0.90909 0.89535 0.89342 0.81086 0.90494 0.93946 0.93761 0.90327 0.95026 0.88005 0.92508 0.88430 0.77868 0.95567 0.95661 0.92408 0.94251 0.90379 0.90524 0.93841 0.80244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.47 59.85 0.69 1.22 16 2 N -0.38 -3.58 4.01 -68.16 -0.27 -3.86 16 3 C 0.07 0.62 11.40 -17.23 -0.20 0.42 16 4 C -0.23 -2.25 4.96 -105.05 -0.52 -2.77 16 5 C 0.13 1.21 5.45 -4.97 -0.03 1.19 16 6 N -0.54 -5.86 4.70 -235.91 -1.11 -6.97 16 7 C 0.06 0.82 5.38 -3.77 -0.02 0.80 16 8 C 0.05 0.82 5.26 -3.77 -0.02 0.80 16 9 N -0.52 -7.62 4.45 -235.92 -1.05 -8.67 16 10 C 0.04 0.53 5.45 -4.98 -0.03 0.51 16 11 C 0.50 10.01 7.53 -10.99 -0.08 9.93 16 12 O -0.54 -12.96 14.34 5.56 0.08 -12.88 16 13 N -0.72 -15.13 5.55 -61.47 -0.34 -15.47 16 14 C 0.25 6.73 5.43 -5.20 -0.03 6.71 16 15 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 19 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.06 0.64 5.61 -3.77 -0.02 0.62 16 24 C 0.06 0.60 5.61 -3.77 -0.02 0.57 16 25 C 0.06 0.61 10.55 -17.37 -0.18 0.43 16 26 N -0.30 -3.61 12.58 30.62 0.39 -3.23 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 32 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.02 6.15 -51.93 -0.32 0.70 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 1.87 5.85 -51.93 -0.30 1.56 16 37 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.10 1.22 8.03 -51.93 -0.42 0.80 16 39 H 0.39 7.00 8.32 -40.82 -0.34 6.67 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 45 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -35.04 382.64 -9.37 -44.40 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.66 Total: 3.60 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.88 Total: 6.93 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -1.65 Total: -63.75 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.08 Total: -12.88 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.04 -9.37 -44.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729931275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.351 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds