Wall clock time and date at job start Fri Apr 10 2020 18:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34942 * 126.03991 * 2 1 4 4 C 1.35316 * 107.74613 * 179.75096 * 3 2 1 5 5 C 1.50706 * 126.04256 * 180.27593 * 4 3 2 6 6 N 1.46899 * 109.47005 * 270.16455 * 5 4 3 7 7 C 1.46959 * 110.99926 * 293.80111 * 6 5 4 8 8 C 1.53047 * 109.36269 * 176.81240 * 7 6 5 9 9 N 1.46958 * 109.36764 * 58.39734 * 8 7 6 10 10 C 1.46900 * 111.00231 * 176.80680 * 9 8 7 11 11 C 1.50697 * 109.47568 * 293.80241 * 10 9 8 12 12 O 1.21281 * 119.99820 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00240 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00068 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47021 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00291 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99933 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00174 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00231 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46800 * 59.99543 * 19 17 15 21 21 H 1.48491 * 109.47388 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46955 * 299.99892 * 19 17 15 23 23 C 1.46954 * 110.87949 * 300.68104 * 9 8 7 24 24 C 1.46958 * 111.00178 * 169.99766 * 6 5 4 25 25 C 1.39870 * 107.92161 * 0.39436 * 4 3 2 26 26 N 1.30836 * 108.20019 * 359.59732 * 25 4 3 27 27 H 1.09002 * 109.47159 * 269.97891 * 1 2 3 28 28 H 1.08999 * 109.46542 * 29.97403 * 1 2 3 29 29 H 1.08999 * 109.47324 * 149.97201 * 1 2 3 30 30 H 1.08002 * 126.12737 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.46808 * 30.16339 * 5 4 3 32 32 H 1.08996 * 109.47016 * 150.16639 * 5 4 3 33 33 H 1.08997 * 109.48526 * 296.77550 * 7 6 5 34 34 H 1.08994 * 109.49029 * 56.84211 * 7 6 5 35 35 H 1.08999 * 109.48983 * 298.42831 * 8 7 6 36 36 H 1.09005 * 109.49043 * 178.36351 * 8 7 6 37 37 H 1.09002 * 109.46853 * 53.80331 * 10 9 8 38 38 H 1.08997 * 109.46941 * 173.79607 * 10 9 8 39 39 H 0.97002 * 119.99429 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.46969 * 299.99796 * 14 13 11 41 41 H 1.08998 * 109.47123 * 59.99402 * 14 13 11 42 42 H 0.96995 * 120.00083 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.48646 * 299.34427 * 23 9 8 44 44 H 1.09004 * 109.48790 * 179.28691 * 23 9 8 45 45 H 1.09005 * 109.48577 * 303.15812 * 24 6 5 46 46 H 1.08997 * 109.48329 * 63.21981 * 24 6 5 47 47 H 1.08002 * 125.90382 * 179.86983 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0056 5 6 4.7681 1.5451 0.0135 6 7 5.1705 1.8366 -1.3689 7 6 5.6232 0.6177 -2.0537 8 6 5.9570 0.9483 -3.5103 9 7 6.9958 1.9871 -3.5485 10 6 7.3983 2.2785 -4.9309 11 6 8.0812 1.0715 -5.5205 12 8 8.2187 0.0670 -4.8547 13 7 8.5383 1.1077 -6.7878 14 6 9.2017 -0.0660 -7.3611 15 6 9.6147 0.2331 -8.7792 16 1 9.4038 1.2005 -9.2104 17 6 10.2610 -0.7286 -9.5264 18 7 10.5175 -1.9069 -9.0014 19 14 10.7723 -0.3582 -11.2845 20 1 11.7091 0.7940 -11.2951 21 1 11.4448 -1.5478 -11.8655 22 1 9.5699 -0.0260 -12.0901 23 6 6.5430 3.2059 -2.8637 24 6 6.2093 2.8754 -1.4071 25 6 3.5347 -0.7322 0.0000 26 7 2.2891 -1.1328 0.0001 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3632 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 1.9282 2.1193 -0.0004 31 1 4.5426 2.4777 0.5307 32 1 5.5804 1.0316 0.5278 33 1 6.5119 0.2297 -1.5560 34 1 4.8324 -0.1318 -2.0229 35 1 5.0617 1.3106 -4.0154 36 1 6.3207 0.0518 -4.0126 37 1 6.5158 2.5218 -5.5226 38 1 8.0854 3.1246 -4.9385 39 1 8.4274 1.9107 -7.3206 40 1 10.0844 -0.3094 -6.7697 41 1 8.5144 -0.9119 -7.3531 42 1 10.9724 -2.5834 -9.5270 43 1 5.6544 3.5939 -3.3615 44 1 7.3339 3.9554 -2.8945 45 1 5.8456 3.7719 -0.9048 46 1 7.1046 2.5130 -0.9020 47 1 4.4054 -1.3712 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729931275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:01 Heat of formation + Delta-G solvation = 34.540255 kcal Electronic energy + Delta-G solvation = -26619.536543 eV Core-core repulsion = 22838.244051 eV Total energy + Delta-G solvation = -3781.292492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.13282 -40.88588 -39.56992 -36.60169 -35.96972 -34.33726 -34.07716 -32.06682 -31.80470 -30.35706 -29.02956 -27.84143 -26.24543 -24.73758 -24.42056 -23.70970 -21.98301 -21.34433 -21.07234 -20.63398 -18.91552 -17.70808 -17.57132 -17.38694 -16.84065 -16.60739 -16.28872 -16.01045 -15.91177 -15.63279 -15.50062 -15.34044 -14.93618 -14.86821 -14.23242 -14.10371 -14.05352 -13.88875 -13.65952 -13.44220 -13.21563 -12.98176 -12.88617 -12.77603 -12.66607 -12.48118 -12.24515 -12.16904 -11.89802 -11.79144 -11.50469 -11.36804 -10.78307 -10.60079 -10.33438 -9.78944 -9.45531 -9.27954 -9.10075 -8.28459 -6.45401 0.99839 1.42917 1.47374 1.55531 1.72902 1.78733 1.82717 2.28868 2.48485 3.05964 3.08463 3.17075 3.66381 3.91818 4.01358 4.04194 4.17602 4.25269 4.27795 4.32275 4.37981 4.39077 4.45849 4.53979 4.57489 4.66537 4.67898 4.70853 4.82753 4.93326 4.94229 4.95827 5.06773 5.12170 5.14679 5.25301 5.26176 5.50252 5.67623 5.71812 5.85576 5.91993 6.02340 6.19165 6.23544 6.26760 6.65977 6.75511 6.97745 7.24314 7.56357 8.83493 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020874 B = 0.002127 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.064209 B =13161.174985 C =13894.982007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.383 5.383 3 C 0.081 3.919 4 C -0.246 4.246 5 C 0.139 3.861 6 N -0.536 5.536 7 C 0.075 3.925 8 C 0.061 3.939 9 N -0.541 5.541 10 C 0.051 3.949 11 C 0.493 3.507 12 O -0.585 6.585 13 N -0.710 5.710 14 C 0.269 3.731 15 C -0.556 4.556 16 H 0.085 0.915 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.986 3.014 20 H -0.261 1.261 21 H -0.286 1.286 22 H -0.262 1.262 23 C 0.058 3.942 24 C 0.059 3.941 25 C 0.040 3.960 26 N -0.342 5.342 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.208 0.792 31 H 0.104 0.896 32 H 0.036 0.964 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.408 0.592 40 H -0.015 1.015 41 H -0.016 1.016 42 H 0.268 0.732 43 H 0.049 0.951 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.031 0.969 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.234 15.845 18.892 31.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.165 5.165 3 C -0.067 4.067 4 C -0.258 4.258 5 C 0.011 3.989 6 N -0.261 5.261 7 C -0.053 4.053 8 C -0.068 4.068 9 N -0.267 5.267 10 C -0.080 4.080 11 C 0.280 3.720 12 O -0.466 6.466 13 N -0.361 5.361 14 C 0.146 3.854 15 C -0.594 4.594 16 H 0.103 0.897 17 C -0.198 4.198 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.185 1.185 21 H -0.212 1.212 22 H -0.186 1.186 23 C -0.069 4.069 24 C -0.069 4.069 25 C -0.146 4.146 26 N -0.164 5.164 27 H 0.106 0.894 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.224 0.776 31 H 0.122 0.878 32 H 0.054 0.946 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.149 0.851 39 H 0.244 0.756 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.117 0.883 45 H 0.129 0.871 46 H 0.050 0.950 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -20.027 13.952 19.336 31.139 hybrid contribution 1.100 -0.007 -1.148 1.590 sum -18.927 13.945 18.188 29.724 Atomic orbital electron populations 1.22164 0.72201 1.05702 1.04566 1.48823 1.07904 1.03501 1.56308 1.22823 0.90204 0.94376 0.99275 1.20062 0.95351 0.93011 1.17332 1.20276 0.92279 0.98386 0.87994 1.62278 1.38891 1.08637 1.16308 1.21881 0.97731 0.92694 0.93026 1.22123 0.91832 0.95634 0.97168 1.61755 1.40174 1.10282 1.14489 1.21924 1.00937 0.95246 0.89876 1.21413 0.78867 0.90283 0.81448 1.90613 1.58825 1.35940 1.61203 1.46189 1.58555 1.17927 1.13474 1.18475 0.90222 0.83724 0.92937 1.21605 1.39327 1.01143 0.97326 0.89706 1.26109 0.95214 0.94349 1.04156 1.70143 1.41557 1.05843 1.39487 0.85189 0.78856 0.77809 0.77245 1.18543 1.21187 1.18622 1.22303 0.99896 0.90594 0.94097 1.22224 0.92853 0.95860 0.95967 1.23997 0.95118 0.95803 0.99665 1.77302 1.02497 1.10207 1.26380 0.89385 0.86689 0.89851 0.77556 0.87787 0.94596 0.95770 0.90945 0.94723 0.92279 0.90016 0.85100 0.75643 0.99717 0.99829 0.92292 0.93266 0.88261 0.87146 0.95018 0.80434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.47 127.77 1.47 2.26 16 2 N -0.38 -6.76 4.01 -369.56 -1.48 -8.24 16 3 C 0.08 1.21 11.40 83.54 0.95 2.16 16 4 C -0.25 -4.58 4.96 -20.14 -0.10 -4.68 16 5 C 0.14 2.26 5.45 85.56 0.47 2.73 16 6 N -0.54 -10.73 4.70 -900.30 -4.23 -14.96 16 7 C 0.08 2.01 5.38 86.31 0.46 2.48 16 8 C 0.06 1.87 5.26 86.31 0.45 2.32 16 9 N -0.54 -15.21 4.45 -900.30 -4.00 -19.21 16 10 C 0.05 1.40 5.45 85.56 0.47 1.86 16 11 C 0.49 20.14 7.53 87.66 0.66 20.80 16 12 O -0.59 -29.82 14.34 -3.03 -0.04 -29.86 16 13 N -0.71 -30.45 5.55 -466.79 -2.59 -33.04 16 14 C 0.27 15.11 5.43 85.63 0.46 15.57 16 15 C -0.56 -30.63 9.28 25.60 0.24 -30.40 16 16 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 17 C 0.00 0.07 5.46 84.65 0.46 0.53 16 18 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 19 Si 0.99 42.70 29.54 68.60 2.03 44.72 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 23 C 0.06 1.11 5.61 86.31 0.48 1.59 16 24 C 0.06 1.01 5.61 86.31 0.48 1.50 16 25 C 0.04 0.91 10.55 85.24 0.90 1.80 16 26 N -0.34 -8.46 12.58 -57.02 -0.72 -9.17 16 27 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.21 1.44 8.06 -2.91 -0.02 1.42 16 31 H 0.10 1.16 8.03 -2.39 -0.02 1.14 16 32 H 0.04 0.64 8.12 -2.39 -0.02 0.62 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 2.00 6.15 -2.39 -0.01 1.98 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 2.33 5.85 -2.38 -0.01 2.31 16 37 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 38 H 0.13 2.78 8.03 -2.39 -0.02 2.76 16 39 H 0.41 14.20 8.32 -92.71 -0.77 13.43 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 42 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.10 1.49 8.07 -2.38 -0.02 1.47 16 45 H 0.11 1.21 8.07 -2.38 -0.02 1.19 16 46 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -81.56 382.64 -2.71 -84.27 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.19 Total: 21.84 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 7.86 Total: 20.53 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -12.74 Total: -141.50 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.04 Total: -29.86 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -81.56 -2.71 -84.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729931275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.806 kcal (2) G-P(sol) polarization free energy of solvation -81.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds