Wall clock time and date at job start Fri Apr 10 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48506 * 109.46853 * 269.99785 * 3 2 1 5 5 H 1.48499 * 109.47441 * 29.99629 * 3 2 1 6 6 H 1.48497 * 109.47160 * 149.99976 * 3 2 1 7 7 C 1.37876 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00074 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 N 1.46504 * 109.46721 * 81.20084 * 14 13 12 16 16 N 1.40311 * 126.32688 * 284.68757 * 15 14 13 17 17 C 1.28865 * 108.11906 * 180.21377 * 16 15 14 18 18 N 1.38013 * 108.81665 * 1.05538 * 17 16 15 19 19 C 1.34302 * 108.33059 * 358.30157 * 18 17 16 20 20 O 1.21819 * 126.32033 * 181.59816 * 19 18 17 21 21 C 1.46724 * 124.15382 * 177.15680 * 18 17 16 22 22 C 1.53283 * 108.65529 * 19.78477 * 21 18 17 23 23 C 1.53222 * 109.38644 * 308.13374 * 22 21 18 24 24 C 1.51121 * 127.47726 * 181.67305 * 17 16 15 25 25 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 26 26 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 27 27 H 0.96996 * 120.00282 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 29 29 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 30 30 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 31 31 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 32 32 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 33 33 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 34 34 H 1.08997 * 109.47004 * 201.20062 * 14 13 12 35 35 H 1.09004 * 109.47021 * 321.20514 * 14 13 12 36 36 H 1.08999 * 109.60683 * 139.54226 * 21 18 17 37 37 H 1.09007 * 109.60127 * 260.03761 * 21 18 17 38 38 H 1.08996 * 109.48751 * 188.15556 * 22 21 18 39 39 H 1.09003 * 109.49715 * 68.11668 * 22 21 18 40 40 H 1.08997 * 109.54164 * 310.74710 * 23 22 21 41 41 H 1.09003 * 109.61262 * 190.53100 * 23 22 21 42 42 H 1.09001 * 109.74508 * 317.47556 * 24 17 16 43 43 H 1.08998 * 109.75101 * 78.15587 * 24 17 16 44 44 H 1.09002 * 109.48908 * 180.71202 * 25 13 12 45 45 H 1.09002 * 109.49369 * 60.64073 * 25 13 12 46 46 H 1.08997 * 109.49355 * 296.78047 * 26 10 9 47 47 H 1.09004 * 109.48943 * 56.84596 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.4505 -2.6252 -0.2387 12 6 5.9068 -4.0844 -0.3102 13 7 5.5609 -4.7651 0.9454 14 6 6.0506 -6.1502 0.9455 15 7 7.4714 -6.1657 1.3024 16 7 8.5408 -5.7949 0.4732 17 6 9.6345 -5.9474 1.1375 18 7 9.3293 -6.4365 2.3914 19 6 7.9942 -6.5454 2.4888 20 8 7.3701 -6.9183 3.4663 21 6 10.3306 -6.7899 3.4039 22 6 11.6479 -6.0871 3.0570 23 6 12.0153 -6.3858 1.5998 24 6 11.0409 -5.6435 0.6754 25 6 4.1116 -4.7190 1.1841 26 6 3.6553 -3.2598 1.2556 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8746 -0.6808 -0.8905 30 1 5.6801 -2.1258 -1.1800 31 1 5.9697 -2.1214 0.5767 32 1 5.4082 -4.5809 -1.1425 33 1 6.9861 -4.1210 -0.4584 34 1 5.4869 -6.7348 1.6725 35 1 5.9206 -6.5816 -0.0471 36 1 9.9890 -6.4628 4.3860 37 1 10.4819 -7.8695 3.4075 38 1 12.4382 -6.4514 3.7133 39 1 11.5322 -5.0114 3.1897 40 1 11.9446 -7.4583 1.4185 41 1 13.0331 -6.0490 1.4027 42 1 11.1734 -5.9860 -0.3509 43 1 11.2234 -4.5704 0.7319 44 1 3.8821 -5.2183 2.1255 45 1 3.5924 -5.2228 0.3688 46 1 4.1540 -2.7632 2.0880 47 1 2.5760 -3.2231 1.4038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872733449.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:18 Heat of formation + Delta-G solvation = 64.793093 kcal Electronic energy + Delta-G solvation = -27700.503406 eV Core-core repulsion = 23920.522776 eV Total energy + Delta-G solvation = -3779.980630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.66315 -38.90356 -37.83536 -36.96036 -35.30155 -33.39541 -32.58496 -31.84102 -30.49554 -29.19648 -28.53378 -26.59017 -24.89800 -23.37119 -23.24982 -22.80205 -21.51623 -20.99541 -20.03520 -19.27852 -17.45208 -17.12131 -16.75247 -16.22333 -16.06852 -15.65809 -14.98050 -14.75699 -14.68726 -14.60898 -14.40897 -14.35726 -13.99585 -13.65558 -13.54001 -13.17053 -13.12843 -12.48787 -12.28816 -12.14737 -12.08355 -11.75132 -11.64393 -11.52052 -11.49941 -11.39967 -11.00980 -10.81665 -10.62285 -10.39321 -10.34896 -10.25627 -9.99357 -9.80294 -9.25334 -8.66161 -8.55251 -8.27786 -7.35467 -6.03980 -4.01221 1.62975 1.81079 2.62854 2.82069 3.29800 3.37131 3.40065 3.85285 4.04023 4.09923 4.16979 4.29709 4.43587 4.58757 4.77481 4.79608 4.85138 4.98336 5.10479 5.15592 5.18832 5.23935 5.28438 5.30920 5.34786 5.44834 5.52696 5.59668 5.68642 5.73280 5.79157 5.83373 5.98367 6.06434 6.17309 6.32525 6.42194 6.51505 6.63923 6.84985 6.98684 7.05232 7.20963 7.57314 7.61115 7.92239 8.01069 8.06213 8.67197 9.03887 9.57963 11.09078 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023259 B = 0.002654 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.535281 B =10546.059384 C =11035.152597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.529 5.529 11 C 0.055 3.945 12 C 0.063 3.937 13 N -0.556 5.556 14 C 0.326 3.674 15 N -0.439 5.439 16 N -0.271 5.271 17 C 0.270 3.730 18 N -0.558 5.558 19 C 0.654 3.346 20 O -0.557 6.557 21 C 0.131 3.869 22 C -0.137 4.137 23 C -0.124 4.124 24 C -0.039 4.039 25 C 0.064 3.936 26 C 0.068 3.932 27 H 0.263 0.737 28 H -0.011 1.011 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.047 0.953 46 H 0.029 0.971 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.473 -15.142 2.894 31.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.036 3.964 10 N -0.254 5.254 11 C -0.074 4.074 12 C -0.065 4.065 13 N -0.282 5.282 14 C 0.115 3.885 15 N -0.261 5.261 16 N -0.092 5.092 17 C -0.009 4.009 18 N -0.288 5.288 19 C 0.353 3.647 20 O -0.431 6.431 21 C 0.010 3.990 22 C -0.175 4.175 23 C -0.162 4.162 24 C -0.079 4.079 25 C -0.064 4.064 26 C -0.060 4.060 27 H 0.073 0.927 28 H 0.006 0.994 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 26.302 -15.011 2.716 30.405 hybrid contribution 0.596 0.874 0.725 1.282 sum 26.897 -14.137 3.441 30.580 Atomic orbital electron populations 1.69893 1.06106 1.26829 1.51139 1.24897 0.94737 0.98856 0.94848 0.86861 0.80321 0.84022 0.78561 1.20151 1.21216 1.19300 1.21026 0.88696 0.94706 1.50266 0.90142 1.20151 0.97055 0.84071 0.95074 1.62130 1.10423 1.19142 1.33700 1.22106 0.90074 0.94836 1.00339 1.22245 1.00500 0.94719 0.89040 1.61750 1.15679 1.14484 1.36335 1.21767 0.74788 0.90980 1.00943 1.49231 1.05670 1.60922 1.10255 1.76691 0.92352 1.21682 1.18512 1.24227 0.97195 0.96572 0.82943 1.46117 1.07328 1.60053 1.15321 1.16548 0.81606 0.82005 0.84519 1.91073 1.64260 1.55151 1.32614 1.21751 0.86261 1.00390 0.90642 1.21976 0.96011 1.01958 0.97546 1.21709 0.99420 1.01245 0.93831 1.20469 0.83859 1.02647 1.00897 1.22231 0.84568 0.98869 1.00705 1.22022 1.01902 0.91334 0.90785 0.92677 0.99363 0.95818 0.90894 0.95375 0.93881 0.90073 0.87319 0.91246 0.89090 0.90205 0.88989 0.90383 0.90788 0.89485 0.87759 0.88011 0.90525 0.93437 0.95263 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.51 -14.61 9.03 -34.44 -0.31 -14.92 16 8 H 0.08 2.49 7.38 -52.49 -0.39 2.11 16 9 C 0.16 4.06 3.79 -4.98 -0.02 4.04 16 10 N -0.53 -11.47 4.70 -235.90 -1.11 -12.58 16 11 C 0.06 1.02 5.61 -3.76 -0.02 1.00 16 12 C 0.06 0.99 5.47 -3.77 -0.02 0.97 16 13 N -0.56 -8.83 4.81 -238.35 -1.15 -9.98 16 14 C 0.33 4.50 6.30 -63.30 -0.40 4.10 16 15 N -0.44 -6.32 3.84 -68.24 -0.26 -6.58 16 16 N -0.27 -3.42 11.33 33.13 0.38 -3.05 16 17 C 0.27 2.64 7.73 -153.76 -1.19 1.45 16 18 N -0.56 -6.12 3.13 -117.55 -0.37 -6.49 16 19 C 0.65 9.86 8.64 -87.06 -0.75 9.10 16 20 O -0.56 -10.11 17.66 5.08 0.09 -10.02 16 21 C 0.13 0.91 6.88 -3.77 -0.03 0.89 16 22 C -0.14 -0.50 5.94 -26.47 -0.16 -0.66 16 23 C -0.12 -0.36 5.95 -26.38 -0.16 -0.52 16 24 C -0.04 -0.19 6.32 -27.44 -0.17 -0.36 16 25 C 0.06 1.04 5.53 -3.76 -0.02 1.02 16 26 C 0.07 1.37 5.43 -3.77 -0.02 1.35 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 29 H 0.02 0.59 7.45 -51.93 -0.39 0.20 16 30 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.08 1.23 6.92 -51.93 -0.36 0.87 16 34 H 0.11 1.45 7.49 -51.93 -0.39 1.06 16 35 H 0.07 0.86 7.90 -51.93 -0.41 0.45 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 40 H 0.07 0.22 8.11 -51.93 -0.42 -0.20 16 41 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 42 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 1.13 7.98 -51.93 -0.41 0.72 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.10 2.08 6.79 -51.93 -0.35 1.72 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -36.07 368.81 -11.85 -47.92 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -7.73 Total: -4.29 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -3.36 Total: 9.36 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -1.74 Total: -65.71 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.07 -11.85 -47.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872733449.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.715 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds